Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

22677264 .. 22678424

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGTGCAGCTACTGAGTATGAAAGACTTCATAGGCAATCAACTACGGCCTGGTTCGACCTTGGATATATTAGGTCAGGTTGCCTGTGTTGCACGGGAGAAACTGAGGCAAAGGATGAAGAAGATACAAGCTCATATGGGTGGTAGAAGTAGAACTACCCTCAAGAGTAAAAGAAGTCGAGAGGACGATGTTGATGATCATGACAAGGGTTCTCAATTGAAACAGCAGAAGATAACTAAAGAACCAAATTCATCAGTGGGTAAAGAGCTGGTGGTGCATGCGTTATACTCGGTCGGCGCAATAAGGAGAGAAGAGCCCTCGTTTAGGGCAAATGATCATATAACAAGCTCTGAATTAGGGTTTCATGGAAAAAATGGGTTGACGAAGAAGAAGGGTAGTGAGGATGATAAAGATTTGAGTTTGAGGCCGAAGCGGAAGAGTATGAAGAGTAAGAAGGCAAAGAGGTTGGGATTCAAGATGCCGAATAAGGAGCATATGATCAGAACACCAAGATATAGTACTGATCCTAATGACTTGCCTGAAGACTTGAAAATGAAGATTGAAACTTTGGAAGGTATTGAGAGTTTTGAAAAGGCCAAGATGACTCTGGTGATAGAGAAGCGTTTGTTCTCGACTGATCTGACTGATAGCGCAAGCCGATTGTCAATGCCTCTGAAGCAAATCAAACCGGAGAGTTTCTTGGACGAGGATGAGATAAAGTTTCTAGCATCACAACATGACTGGCCGGTTTCGGTTATAAGTCCCAAACTTGAGGAAGAAAGTTTAACTTTGAGGCAGTGGAACATGAATAAGAACAATGGCAATGTTAGCTCAAGTTATGTATTGAAATCAGGTTGGAATGAAGTTCACCAGAAAAATCAACTCGAAAAAGATGATGTGATCCAAGTTTGGTCATTTCGAGACGTGGGAAACAACCTTCACTTTGCTATTGTTTTGCTTGAGAAGGCAACAGAGGGTGGTTCAGGTAGTAGTGATGGTGATGTGCGTAGTCGGTGTTCTTCATCGCGATCAACAACATTGCCTAGCAACAATGATGCTGATGGTGAAAAGAGTAGTTCTGATATTGGTCAAGATCTTGAGAGCAATAGTAGTGGGAGTGGAAGAAGTTCAACACCTTATTGTAATGAAACTGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

387

Amino Acids

43.3

Weight (kDa)

8.96

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	199 - 289	1.5e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
AccII	CGCG	1 cut(s)	1027
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	2 cut(s)	518, 895
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	561, 695
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	7 cut(s)	220, 475, 550, 563, 590, 847, 1131
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	10, 131, 268, 348, 831
AluI	AGCT	5 cut(s)	10, 131, 268, 348, 831
Alw26I	GTCTC	1 cut(s)	915
AlwI	GGATC	2 cut(s)	518, 895
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	4 cut(s)	47, 425, 594, 743
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	2 cut(s)	26, 1126
AspLEI	GCGC	2 cut(s)	299, 653
AsuHPI	GGTGA	4 cut(s)	622, 860, 1010, 1076
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	989, 1055
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	3 cut(s)	196, 334, 498
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	2 cut(s)	725, 1044
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	51
BmgBI	CACGTC	1 cut(s)	925
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	468, 737, 1045
BpiI	GAAGAC	1 cut(s)	549
BpuEI	CTTGAG	5 cut(s)	146, 791, 817, 980, 1118
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	1 cut(s)	746
Bse3DI	GCAATG	2 cut(s)	829, 1037
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	120, 409, 715
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMI	GCAATG	2 cut(s)	829, 1037
BseMII	CTCAG	2 cut(s)	5, 95
BseNI	ACTGG	1 cut(s)	746
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	1027
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	49, 427, 596, 745
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	689, 746
BslFI	GGGAC	1 cut(s)	747
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	915
BsmBI	CGTCTC	1 cut(s)	915
BsmFI	GGGAC	1 cut(s)	747
BsnI	GGCC	4 cut(s)	49, 427, 596, 745
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
Bsp68I	TCGCGA	1 cut(s)	1027
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	4 cut(s)	49, 427, 596, 745
BspCNI	CTCAG	2 cut(s)	6, 96
BspFNI	CGCG	1 cut(s)	1027
BspHI	TCATGA	1 cut(s)	199
BspPI	GGATC	2 cut(s)	518, 895
BspQI	GCTCTTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	829, 1037
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	1153
Bst6I	CTCTTC	3 cut(s)	306, 431, 440
BstC8I	GCNNGC	2 cut(s)	279, 655
BstDEI	CTNAG	2 cut(s)	14, 104
BstENI	CCTNNNNNAGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	120, 409, 715
BstFNI	CGCG	1 cut(s)	1027
BstHHI	GCGC	2 cut(s)	299, 653
BstKTI	GATC	8 cut(s)	199, 337, 501, 526, 640, 903, 1031, 1096
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 274, 676, 828
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	1027
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	1 cut(s)	1093
BstYI	RGATCY	1 cut(s)	1093
BsuRI	GGCC	4 cut(s)	49, 427, 596, 745
BtgZI	GCGATG	1 cut(s)	1008
BtrI	CACGTC	1 cut(s)	925
BtsCI	GGATG	3 cut(s)	120, 409, 715
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	2 cut(s)	261, 803
BtuMI	TCGCGA	1 cut(s)	1027
Cac8I	GCNNGC	2 cut(s)	279, 655
CaiI	CAGNNNCTG	1 cut(s)	13
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	2 cut(s)	299, 653
Cfr10I	RCCGGY	1 cut(s)	745
Csp6I	GTAC	1 cut(s)	519
CspCI	CAANNNNNGTGG	2 cut(s)	1093, 1128
CviAII	CATG	5 cut(s)	200, 278, 365, 737, 805
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	2 cut(s)	14, 104
DpnI	GATC	8 cut(s)	198, 336, 500, 525, 639, 902, 1030, 1095
DpnII	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	3 cut(s)	306, 431, 440
EarI	CTCTTC	3 cut(s)	306, 431, 440
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	318
Eco57I	CTGAAG	2 cut(s)	561, 695
EcoNI	CCTNNNNNAGG	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	915
FaeI	CATG	5 cut(s)	203, 281, 368, 740, 808
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FaqI	GGGAC	1 cut(s)	747
FatI	CATG	5 cut(s)	199, 277, 364, 736, 804
FauNDI	CATATG	2 cut(s)	135, 495
FbaI	TGATCA	3 cut(s)	196, 334, 498
Fnu4HI	GCNGC	1 cut(s)	8
FokI	GGATG	3 cut(s)	127, 416, 722
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	2 cut(s)	725, 1044
GlaI	GCGC	2 cut(s)	298, 652
GluI	GCNGC	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	49, 427, 596, 745
HapII	CCGG	2 cut(s)	689, 746
HhaI	GCGC	2 cut(s)	299, 653
Hin1II	CATG	5 cut(s)	203, 281, 368, 740, 808
Hin6I	GCGC	2 cut(s)	297, 651
HinP1I	GCGC	2 cut(s)	297, 651
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	471, 604
HpaII	CCGG	2 cut(s)	689, 746
HphI	GGTGA	4 cut(s)	622, 860, 1010, 1076
Hpy166II	GTNNAC	2 cut(s)	381, 868
Hpy188I	TCNGA	5 cut(s)	352, 503, 642, 675, 1081
Hpy188III	TCNNGA	9 cut(s)	163, 179, 200, 475, 631, 920, 1026, 1091, 1097
Hpy8I	GTNNAC	2 cut(s)	381, 868
HpyAV	CCTTC	5 cut(s)	385, 448, 566, 947, 958
HpyCH4III	ACNGT	1 cut(s)	1153
HpyCH4IV	ACGT	1 cut(s)	924
HpyCH4V	TGCA	3 cut(s)	7, 92, 277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 274, 676, 828
HpyF3I	CTNAG	2 cut(s)	14, 104
HpySE526I	ACGT	1 cut(s)	924
Hsp92II	CATG	5 cut(s)	203, 281, 368, 740, 808
HspAI	GCGC	2 cut(s)	297, 651
Ksp22I	TGATCA	3 cut(s)	196, 334, 498
Kzo9I	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	468, 737, 1045
MaeI	CTAG	2 cut(s)	725, 1044
MaeII	ACGT	1 cut(s)	924
MalI	GATC	8 cut(s)	198, 336, 500, 525, 639, 902, 1030, 1095
MboI	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	1093
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	215, 247, 353
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	836
MroXI	GAANNNNTTC	2 cut(s)	26, 1126
MseI	TTAA	2 cut(s)	785, 1159
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	2 cut(s)	689, 746
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	4 cut(s)	89, 274, 676, 828
NdeI	CATATG	2 cut(s)	135, 495
NdeII	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
NlaIII	CATG	5 cut(s)	203, 281, 368, 740, 808
NruI	TCGCGA	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	26, 1126
PfeI	GAWTC	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PsiI	TTATAA	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	1000, 1032
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	1093
RruI	TCGCGA	1 cut(s)	1027
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	785, 1159
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	8 cut(s)	196, 334, 498, 523, 637, 900, 1028, 1093
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	318
SfaNI	GCATC	3 cut(s)	468, 737, 1045
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	5 cut(s)	161, 770, 832, 959, 1097
SmoI	CTYRAG	5 cut(s)	161, 770, 832, 959, 1097
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	215, 247, 353
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	2 cut(s)	725, 1044
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	1153
TaiI	ACGT	1 cut(s)	927
TaqI	TCGA	5 cut(s)	56, 178, 632, 885, 919
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	3 cut(s)	215, 247, 353
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	2 cut(s)	785, 1159
Tru9I	TTAA	2 cut(s)	785, 1159
TscAI	CASTG	2 cut(s)	261, 803
TseI	GCWGC	1 cut(s)	7
TspRI	CASTG	2 cut(s)	261, 803
XagI	CCTNNNNNAGG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmnI	GAANNNNTTC	2 cut(s)	26, 1126
XspI	CTAG	2 cut(s)	725, 1044
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.