Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

66895576 .. 66897182

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG449800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGCCTCTACTGAGTATGAGAGATTTCAAGGGCAAAGAACTTAGACCTGGTTCATCCTTGGATATGTTTGGTCAGGTTGCTTGTGTTGCACGGGAGAAACTGAAGCAAAGGAGGAAGGAGAAAAATATTAAAATCAAAACCCAAATGGGTAGTAGTAGTACCCCCCAGATTAAAGAACCCAATTATGTAGCTGAAGCATTTTCATTTGGCTCCAAAGAGACGTATGCTAATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATGATCATGACAAGAGTTTTCAATTGAAACAACAGAAGATAATTTTGTTGCACAAGGAAATTGGTAGTACCTCCAAGACTAAAGAACCAAATACATCAGTAGGAAGAGAATTGGAGCAGGATCCATTATACTCAGTTGGCACAATAAGGAGTGAAAGGTCTTTCCCTAGGGAAAAGTATATAACGAGCTTTGATTTGGGGTTTCAGGAAAAGAATGGGTTGCCAAAGAAGAAGAGTATTAATGGGGTTGAGTATGATACAGATTGGGAGTTGAAAAGGAAGATCGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAAGCCAAGATGACTATGGTCATAGAAAAGCATTTGTTCAGTACTGATATGGCAAAAAGCGCTAATCGGTTGTCAATGCCTCTAAAACAAATCAAACCGGAGAGTTTTCTGGACGAGGATGAGATAAAGTTTCTTGCAATTCAAGAAGATTGGCCGGTTTCGGTTATAAGTCCCCTACTTGAAGATGAAGCTCTGACCTTCAGGCAGTGGAACATGAAAAAGGATAACGGCAGCGTTAGCTCAAGTTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGATGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTAATAGTTGTGATATTGGCCAAGGAACAGAAACAAAGGAACAAGAGATGATGGAAGGAGCTCAGATTAATGATGGGAGCAGTAGTGGGAATGGGAGAACTCCAACACCGTATGGCAATGAGTCTCATGATCACGAAATTTCGACACCGTATCCTTTTAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

406

Amino Acids

46.01

Weight (kDa)

7.64

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	197 - 286	1.7e-12	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AciI	CCGC	1 cut(s)	1025
AclWI	GGATC	2 cut(s)	383, 396
AcoI	YGGCCR	2 cut(s)	734, 1072
AcsI	RAATTY	1 cut(s)	1191
AcuI	CTGAAG	3 cut(s)	125, 216, 766
AfaI	GTAC	3 cut(s)	163, 337, 625
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	1 cut(s)	916
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	9 cut(s)	31, 290, 295, 541, 572, 581, 725, 764, 838
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	194, 456, 773, 822, 1115
AluI	AGCT	5 cut(s)	194, 456, 773, 822, 1115
Alw21I	GWGCWC	1 cut(s)	1117
Alw26I	GTCTC	3 cut(s)	215, 878, 1182
AlwI	GGATC	2 cut(s)	383, 396
Aor51HI	AGCGCT	1 cut(s)	643
AoxI	GGCC	2 cut(s)	734, 1072
ApeKI	GCWGC	1 cut(s)	813
ApoI	RAATTY	1 cut(s)	1191
AseI	ATTAAT	2 cut(s)	507, 1122
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	998, 1061
AvrII	CCTAGG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	1074
BamHI	GGATCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	1117
BarI	GAAGNNNNNNTAC	2 cut(s)	988, 1020
Bbv12I	GWGCWC	1 cut(s)	1117
BbvI	GCAGC	1 cut(s)	825
BccI	CCATC	5 cut(s)	959, 977, 1040, 1099, 1121
BceAI	ACGGC	1 cut(s)	826
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	1215
BclI	TGATCA	2 cut(s)	271, 1183
BcoDI	GTCTC	3 cut(s)	215, 878, 1182
BfaI	CTAG	2 cut(s)	435, 1029
BfoI	RGCGCY	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	1215
BisI	GCNGC	2 cut(s)	814, 1025
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	2 cut(s)	815, 1026
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	214, 390
BmrFI	CCNGG	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	808, 958
BsaI	GGTCTC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	60, 434, 1075
BsaWI	WCCGGW	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	1123, 1153
Bsc4I	CCNNNNNNNGG	1 cut(s)	916
Bse118I	RCCGGY	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	1177
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	60, 434, 1075
BseGI	GGATG	2 cut(s)	56, 706
BseLI	CCNNNNNNNGG	1 cut(s)	916
BseMI	GCAATG	1 cut(s)	1177
BseMII	CTCAG	3 cut(s)	5, 414, 1130
BseXI	GCAGC	1 cut(s)	825
BshFI	GGCC	2 cut(s)	736, 1074
BsiHKAI	GWGCWC	1 cut(s)	1117
BsiSI	CCGG	2 cut(s)	680, 737
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	916
BsmAI	GTCTC	3 cut(s)	215, 878, 1182
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	738
BsnI	GGCC	2 cut(s)	736, 1074
Bso31I	GGTCTC	1 cut(s)	878
Bsp1286I	GDGCHC	1 cut(s)	1117
Bsp143I	GATC	5 cut(s)	271, 388, 549, 1013, 1183
BspACI	CCGC	1 cut(s)	1025
BspANI	GGCC	2 cut(s)	736, 1074
BspCNI	CTCAG	3 cut(s)	6, 413, 1129
BspHI	TCATGA	2 cut(s)	274, 1180
BspLI	GGNNCC	2 cut(s)	214, 390
BspPI	GGATC	2 cut(s)	383, 396
BspTNI	GGTCTC	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	1177
BsrFI	RCCGGY	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	3 cut(s)	60, 434, 1075
BssMI	GATC	5 cut(s)	271, 388, 549, 1013, 1183
BssT1I	CCWWGG	3 cut(s)	60, 434, 1075
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	1164, 1203
Bst6I	CTCTTC	2 cut(s)	367, 494
BstDEI	CTNAG	4 cut(s)	14, 44, 400, 1116
BstF5I	GGATG	2 cut(s)	56, 706
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	644
BstKTI	GATC	5 cut(s)	274, 391, 552, 1016, 1186
BstMAI	GTCTC	3 cut(s)	215, 878, 1182
BstMBI	GATC	5 cut(s)	271, 388, 549, 1013, 1183
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 641, 819
BstNI	CCWGG	1 cut(s)	51
BstPAI	GACNNNNGTC	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	1215
BsuRI	GGCC	2 cut(s)	736, 1074
BtsCI	GGATG	2 cut(s)	56, 706
BtsI	GCAGTG	1 cut(s)	794
BtsIMutI	CAGTG	1 cut(s)	794
CciI	TCATGA	2 cut(s)	274, 1180
CfoI	GCGC	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	736
CsiI	ACCWGGT	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	162, 336, 624
CviAII	CATG	3 cut(s)	275, 796, 1181
CviQI	GTAC	3 cut(s)	162, 336, 624
DdeI	CTNAG	4 cut(s)	14, 44, 400, 1116
DpnI	GATC	5 cut(s)	273, 390, 551, 1015, 1185
DpnII	GATC	5 cut(s)	271, 388, 549, 1013, 1183
EaeI	YGGCCR	2 cut(s)	734, 1072
Eam1104I	CTCTTC	2 cut(s)	367, 494
EarI	CTCTTC	2 cut(s)	367, 494
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	3 cut(s)	60, 434, 1075
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	878
Eco47III	AGCGCT	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	3 cut(s)	125, 216, 766
EcoICRI	GAGCTC	1 cut(s)	1115
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	3 cut(s)	60, 434, 1075
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	3 cut(s)	60, 434, 1075
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	3 cut(s)	278, 799, 1184
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	3 cut(s)	274, 795, 1180
FbaI	TGATCA	2 cut(s)	271, 1183
Fnu4HI	GCNGC	2 cut(s)	814, 1025
FokI	GGATG	2 cut(s)	43, 713
FriOI	GRGCYC	1 cut(s)	1117
Fsp4HI	GCNGC	2 cut(s)	814, 1025
FspBI	CTAG	2 cut(s)	435, 1029
GlaI	GCGC	1 cut(s)	643
GluI	GCNGC	2 cut(s)	814, 1025
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	736, 1074
HapII	CCGG	2 cut(s)	680, 737
HhaI	GCGC	1 cut(s)	644
Hin1II	CATG	3 cut(s)	278, 799, 1184
Hin6I	GCGC	1 cut(s)	642
HinP1I	GCGC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	250, 1175
HpaII	CCGG	2 cut(s)	680, 737
HphI	GGTGA	2 cut(s)	998, 1061
Hpy188I	TCNGA	3 cut(s)	777, 911, 1119
Hpy188III	TCNNGA	8 cut(s)	254, 275, 473, 692, 725, 1011, 1181, 1187
HpyAV	CCTTC	6 cut(s)	112, 557, 790, 938, 1014, 1103
HpyCH4III	ACNGT	2 cut(s)	1164, 1203
HpyCH4IV	ACGT	2 cut(s)	224, 844
HpyCH4V	TGCA	3 cut(s)	92, 319, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 641, 819
HpyF3I	CTNAG	4 cut(s)	14, 44, 400, 1116
HpySE526I	ACGT	2 cut(s)	224, 844
Hsp92II	CATG	3 cut(s)	278, 799, 1184
HspAI	GCGC	1 cut(s)	642
Ksp22I	TGATCA	2 cut(s)	271, 1183
Kzo9I	GATC	5 cut(s)	271, 388, 549, 1013, 1183
LmnI	GCTCC	4 cut(s)	218, 382, 1112, 1131
Lsp1109I	GCAGC	1 cut(s)	825
MabI	ACCWGGT	1 cut(s)	49
MaeI	CTAG	2 cut(s)	435, 1029
MaeII	ACGT	2 cut(s)	224, 844
MalI	GATC	5 cut(s)	273, 390, 551, 1015, 1185
MboI	GATC	5 cut(s)	271, 388, 549, 1013, 1183
MboII	GAAGA	8 cut(s)	316, 384, 508, 511, 559, 740, 776, 999
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	1117
MlsI	TGGCCA	1 cut(s)	1074
MluCI	AATT	7 cut(s)	184, 290, 309, 327, 377, 720, 1191
MluNI	TGGCCA	1 cut(s)	1074
MlyI	GAGTC	2 cut(s)	259, 1184
MmeI	TCCRAC	2 cut(s)	827, 1181
MnlI	CCTC	6 cut(s)	18, 108, 250, 349, 672, 691
Mox20I	TGGCCA	1 cut(s)	1074
MscI	TGGCCA	1 cut(s)	1074
MseI	TTAA	4 cut(s)	132, 174, 507, 1122
Msp20I	TGGCCA	1 cut(s)	1074
MspI	CCGG	2 cut(s)	680, 737
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	89, 641, 819
NdeII	GATC	5 cut(s)	271, 388, 549, 1013, 1183
NlaIII	CATG	3 cut(s)	278, 799, 1184
NlaIV	GGNNCC	2 cut(s)	214, 390
PagI	TCATGA	2 cut(s)	274, 1180
PkrI	GCNGC	2 cut(s)	815, 1026
PleI	GAGTC	2 cut(s)	258, 1183
PpsI	GAGTC	2 cut(s)	258, 1183
PshAI	GACNNNNGTC	1 cut(s)	599
PshBI	ATTAAT	2 cut(s)	507, 1122
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	1117
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	214, 390
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	3 cut(s)	163, 337, 625
RsaNI	GTAC	3 cut(s)	162, 336, 624
SacI	GAGCTC	1 cut(s)	1117
SaqAI	TTAA	4 cut(s)	132, 174, 507, 1122
SatI	GCNGC	2 cut(s)	814, 1025
Sau3AI	GATC	5 cut(s)	271, 388, 549, 1013, 1183
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	2 cut(s)	259, 1184
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	1117
SexAI	ACCWGGT	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	823, 973
SmoI	CTYRAG	2 cut(s)	823, 973
Sse9I	AATT	7 cut(s)	184, 290, 309, 327, 377, 720, 1191
SsiI	CCGC	1 cut(s)	1025
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	435, 1029
SstI	GAGCTC	1 cut(s)	1117
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	3 cut(s)	60, 434, 1075
TaaI	ACNGT	2 cut(s)	1164, 1203
TaiI	ACGT	2 cut(s)	227, 847
TaqI	TCGA	3 cut(s)	253, 552, 1196
TasI	AATT	7 cut(s)	184, 290, 309, 327, 377, 720, 1191
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	1027
Tru1I	TTAA	4 cut(s)	132, 174, 507, 1122
Tru9I	TTAA	4 cut(s)	132, 174, 507, 1122
TscAI	CASTG	1 cut(s)	794
TseI	GCWGC	1 cut(s)	813
TspDTI	ATGAA	6 cut(s)	17, 45, 195, 251, 783, 812
TspRI	CASTG	1 cut(s)	794
VspI	ATTAAT	2 cut(s)	507, 1122
XapI	RAATTY	1 cut(s)	1191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XmaJI	CCTAGG	1 cut(s)	434
XspI	CTAG	2 cut(s)	435, 1029
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.