Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

22903891 .. 22905054

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGCCTCTATTGAGTATGAAAGATTTCGAGGGCAGAAAACTTCGACTTGGTTCATTCTTGGATATTTTAGGTCAGGTTGCTTGTGTTGCACGGGAGAAACACAAGCGAAGGAGGGAGGAGACAACTATTAACATCAAAATCCAAAGGGGTTGTAGTAGTAGTAGCACCCCCAAGATTAAAGTAGTCGAAGCAGCAAGTCAAGAGGACAATGTTGATGATCATGACATGAGTTCTCGATTGAAAAAACAGAAGATTGTTCCCTTGCAGGTGAATGCGTTATATTCAGTTGGCACAATAACGAGTGAAAGGTCTTTAACGAGGTTTCAGGAAAAGAATGGATTGGCAAAGAAGAAGAGTAATGATGGTGGTGAAAATGATAGAGATTGGAGTCTGAAGCCAAATCCGAGGAATATGAACAAGAGATTGGGATTGAAGAGGCCAAAGGGGCATATACCAGCTTCAACAAATAATTCTGATCCTAATGACTTGCCTGAAGAGTTGAAAAGAAAGATTGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAGGCCAAGATGTACATGGTAATAGAGAAGCAGTTGTTCCAAACTGATATGGCAAAAAGCGCTAACCGGTTATCAATGCCTCTGAAACAAATCAAACCGGAGAGTTTCTTGGACAAGGATGAGATAAAATTTCTTGCAGATCAAAACGACTGGCTGGTTTCGGTTATAAGTCCCAAACTTGAGGATGAAGCGCTAACCTTCAGGCAATGGGACATGCCAAAGAATAACGGTGGTGTTAGCTCAAGTTATGTGTTGAAACAACGTTGGAACGAAGTTCGCAACAAAAATGGTCTCCAAAAAGATGACTTGATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTATTGCTTGACATGCTTGACAAGGCAAAAGAGGGTGGTTCAAGAAATTATGGTGTTGGGTGTAGCCTACCTTCTTCGCAATCGACAACAGCGCCTAGGAAGAGTGATGTTATTGATGGTGAACGTAAAACCTGTGATAGTAATCAGGTAACAGAAACAAAGGACCAAGAGATGATACAAGGAGATGAGATTAATGAGGAGAGCAGTAGGAAGAGAAGTCTGTGTGGCAATGAGCCAGAAAACTGTGACACCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

388

Amino Acids

43.92

Weight (kDa)

8.55

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	187 - 274	4.8e-13	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AarI	CACCTGC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	259
AclI	AACGTT	1 cut(s)	808
AclWI	GGATC	2 cut(s)	473, 850
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	3 cut(s)	416, 516, 730
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	2 cut(s)	607, 738
AfiI	CCNNNNNNNGG	1 cut(s)	880
AgeI	ACCGGT	1 cut(s)	612
AgsI	TTSAA	9 cut(s)	244, 436, 465, 505, 518, 536, 545, 802, 948
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	461, 786
AluI	AGCT	2 cut(s)	461, 786
Alw26I	GTCTC	2 cut(s)	116, 842
AlwI	GGATC	2 cut(s)	473, 850
Aor51HI	AGCGCT	2 cut(s)	607, 738
AoxI	GGCC	2 cut(s)	440, 549
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	674
AseI	ATTAAT	1 cut(s)	1098
AsiGI	ACCGGT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	1001
AspLEI	GCGC	3 cut(s)	608, 739, 1000
AspS9I	GGNCC	1 cut(s)	1069
AsuHPI	GGTGA	3 cut(s)	283, 383, 1037
AvaII	GGWCC	1 cut(s)	1069
AvrII	CCTAGG	1 cut(s)	1001
BarI	GAAGNNNNNNTAC	2 cut(s)	961, 993
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	2 cut(s)	359, 1016
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	116, 842
BfaI	CTAG	1 cut(s)	1002
BfoI	RGCGCY	3 cut(s)	609, 740, 1001
BfuAI	ACCTGC	1 cut(s)	259
BglI	GCCNNNNNGGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	195
BlnI	CCTAGG	1 cut(s)	1001
BlsI	GCNGC	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	1069
BmgT120I	GGNCC	1 cut(s)	1069
BmiI	GGNNCC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	746, 772
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	2 cut(s)	407, 1001
BsaWI	WCCGGW	2 cut(s)	612, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	2 cut(s)	758, 1141
Bse8I	GATNNNNATC	1 cut(s)	1047
BseDI	CCNNGG	2 cut(s)	407, 1001
BseGI	GGATG	2 cut(s)	670, 736
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMI	GCAATG	2 cut(s)	758, 1141
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	2 cut(s)	134, 1118
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	2 cut(s)	442, 551
BshTI	ACCGGT	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	613, 644
BslFI	GGGAC	2 cut(s)	702, 770
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	2 cut(s)	116, 842
BsmFI	GGGAC	2 cut(s)	702, 770
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	442, 551
Bso31I	GGTCTC	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	220, 478, 685, 855
BspANI	GGCC	2 cut(s)	442, 551
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	473, 850
BspTNI	GGTCTC	1 cut(s)	842
BsrDI	GCAATG	2 cut(s)	758, 1141
BsrFI	RCCGGY	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	407, 1001
BssMI	GATC	4 cut(s)	220, 478, 685, 855
BssT1I	CCWWGG	1 cut(s)	1001
Bst4CI	ACNGT	2 cut(s)	776, 1151
Bst6I	CTCTTC	5 cut(s)	350, 431, 492, 1001, 1112
BstAUI	TGTACA	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	670, 736
BstH2I	RGCGCY	3 cut(s)	609, 740, 1001
BstHHI	GCGC	3 cut(s)	608, 739, 1000
BstKTI	GATC	4 cut(s)	223, 481, 688, 858
BstMAI	GTCTC	2 cut(s)	116, 842
BstMBI	GATC	4 cut(s)	220, 478, 685, 855
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 448, 605, 919
BstNSI	RCATGY	2 cut(s)	763, 922
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	442, 551
BtsCI	GGATG	2 cut(s)	670, 736
BveI	ACCTGC	1 cut(s)	259
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	3 cut(s)	608, 739, 1000
Cfr10I	RCCGGY	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	1069
Csp6I	GTAC	1 cut(s)	559
CspAI	ACCGGT	1 cut(s)	612
CviAII	CATG	5 cut(s)	224, 229, 562, 760, 919
CviJI	RGCY	9 cut(s)	7, 400, 442, 461, 551, 700, 786, 972, 1141
CviKI_1	RGCY	9 cut(s)	7, 400, 442, 461, 551, 700, 786, 972, 1141
CviQI	GTAC	1 cut(s)	559
DpnI	GATC	4 cut(s)	222, 480, 687, 857
DpnII	GATC	4 cut(s)	220, 478, 685, 855
Eam1104I	CTCTTC	5 cut(s)	350, 431, 492, 1001, 1112
EarI	CTCTTC	5 cut(s)	350, 431, 492, 1001, 1112
Eco130I	CCWWGG	1 cut(s)	1001
Eco31I	GGTCTC	1 cut(s)	842
Eco47I	GGWCC	1 cut(s)	1069
Eco47III	AGCGCT	2 cut(s)	607, 738
Eco57I	CTGAAG	3 cut(s)	416, 516, 730
EcoT14I	CCWWGG	1 cut(s)	1001
ErhI	CCWWGG	1 cut(s)	1001
FaeI	CATG	5 cut(s)	227, 232, 565, 763, 922
FaqI	GGGAC	2 cut(s)	702, 770
FatI	CATG	5 cut(s)	223, 228, 561, 759, 918
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	677, 743
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	3 cut(s)	607, 738, 999
GluI	GCNGC	1 cut(s)	195
HaeII	RGCGCY	3 cut(s)	609, 740, 1001
HaeIII	GGCC	2 cut(s)	442, 551
HapII	CCGG	2 cut(s)	613, 644
HhaI	GCGC	3 cut(s)	608, 739, 1000
Hin1II	CATG	5 cut(s)	227, 232, 565, 763, 922
Hin6I	GCGC	3 cut(s)	606, 737, 998
HinP1I	GCGC	3 cut(s)	606, 737, 998
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	2 cut(s)	613, 644
HphI	GGTGA	3 cut(s)	283, 383, 1037
Hpy166II	GTNNAC	1 cut(s)	1028
Hpy188I	TCNGA	5 cut(s)	396, 408, 478, 630, 875
Hpy188III	TCNNGA	5 cut(s)	203, 224, 237, 329, 948
Hpy8I	GTNNAC	1 cut(s)	1028
HpyAV	CCTTC	5 cut(s)	105, 521, 754, 902, 987
HpyCH4III	ACNGT	2 cut(s)	776, 1151
HpyCH4IV	ACGT	2 cut(s)	808, 1030
HpyCH4V	TGCA	3 cut(s)	92, 268, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 448, 605, 919
HpySE526I	ACGT	2 cut(s)	808, 1030
Hsp92II	CATG	5 cut(s)	227, 232, 565, 763, 922
HspAI	GCGC	3 cut(s)	606, 737, 998
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	220, 478, 685, 855
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	2 cut(s)	808, 1030
MaeIII	GTNAC	2 cut(s)	1054, 1151
MalI	GATC	4 cut(s)	222, 480, 687, 857
MboI	GATC	4 cut(s)	220, 478, 685, 855
MboII	GAAGA	8 cut(s)	265, 364, 367, 448, 509, 972, 1018, 1129
MluCI	AATT	3 cut(s)	472, 674, 952
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	4 cut(s)	132, 180, 317, 1098
MspI	CCGG	2 cut(s)	613, 644
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	4 cut(s)	89, 448, 605, 919
NdeII	GATC	4 cut(s)	220, 478, 685, 855
NlaIII	CATG	5 cut(s)	227, 232, 565, 763, 922
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	1151
NspI	RCATGY	2 cut(s)	763, 922
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	259
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	612
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PshBI	ATTAAT	1 cut(s)	1098
PsiI	TTATAA	1 cut(s)	713
Psp1406I	AACGTT	1 cut(s)	808
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	1069
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	4 cut(s)	132, 180, 317, 1098
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	220, 478, 685, 855
Sau96I	GGNCC	1 cut(s)	1069
SchI	GAGTC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	1069
SmlI	CTYRAG	2 cut(s)	725, 787
SmoI	CTYRAG	2 cut(s)	725, 787
Sse9I	AATT	3 cut(s)	472, 674, 952
SspMI	CTAG	1 cut(s)	1002
StyI	CCWWGG	1 cut(s)	1001
TaaI	ACNGT	2 cut(s)	776, 1151
TaiI	ACGT	2 cut(s)	811, 1033
TaqI	TCGA	5 cut(s)	30, 46, 189, 238, 989
TasI	AATT	3 cut(s)	472, 674, 952
TatI	WGTACW	1 cut(s)	558
Tru1I	TTAA	4 cut(s)	132, 180, 317, 1098
Tru9I	TTAA	4 cut(s)	132, 180, 317, 1098
TseFI	GTSAC	1 cut(s)	1151
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	1151
TspDTI	ATGAA	4 cut(s)	35, 45, 431, 747
VpaK11BI	GGWCC	1 cut(s)	1069
VspI	ATTAAT	1 cut(s)	1098
XapI	RAATTY	1 cut(s)	674
XceI	RCATGY	2 cut(s)	763, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmaJI	CCTAGG	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.