Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

52462856 .. 52463440

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG400400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGATAGAGAAGCATCTGTTCGAGACTGATCTGACTGATAGCGCAAGCCGATTGTCAATGCCTCTGAAACAAATCAAACCGGAGAGTTTCTTGGACGAGGATGAGATAAAGTTTCTTGCATCTCAACAAGACTGGCCGGTTTCGGTTATAAGTCCCAAACTTAAGGACGAAAATCTAACTTTCAGGCAATGGAACATGAATAAGAATAACGGCAACGTTAGCTCAAGTTATGTGTTGAAAACAGGTTGGAACGAACTTCACAAGAAAAACGGTCTCCAAGTAAATGATGTAATCCAAGTTTGGTCATTTCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTCTTGTTGAGAAGGCAACAGAGGGCGGTTTAAGACCATCAGTAGAGGGGTGTAGTCTACCTTCTTCGCGATCAACAACGCCGCCTAGCAACAATAATGTTGATGGTGAAAATAGTAGTTGTAATATTGGCCAAGGAACAGAAATAAAAGAAGAAGAGATGATAAGAGGAGATGAAAATCGTGAGGTTAATGATGAAAGCAATAGCAGGAGTGGAAGAAGTTCAACGTACACCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

194

Amino Acids

21.76

Weight (kDa)

4.98

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	2 - 87	4.7e-15	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	403
AccII	CGCG	1 cut(s)	415
AciI	CCGC	2 cut(s)	372, 428
AclI	AACGTT	1 cut(s)	219
AcoI	YGGCCR	2 cut(s)	137, 475
AfaI	GTAC	1 cut(s)	575
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	241, 570
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	20, 281
AoxI	GGCC	2 cut(s)	137, 475
Asp700I	GAANNNNTTC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	16, 464
BalI	TGGCCA	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
BccI	CCATC	2 cut(s)	391, 443
BceAI	ACGGC	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	20, 281
BfaI	CTAG	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	25, 131
BpuEI	CTTGAG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	139, 477
BsiSI	CCGG	2 cut(s)	83, 140
BslFI	GGGAC	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	20, 281
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	139, 477
Bso31I	GGTCTC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	31, 416
Bsp68I	TCGCGA	1 cut(s)	415
BspACI	CCGC	2 cut(s)	372, 428
BspANI	GGCC	2 cut(s)	139, 477
BspFNI	CGCG	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	31, 416
BssT1I	CCWWGG	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	275, 580
Bst6I	CTCTTC	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	34, 419
BstMAI	GTCTC	2 cut(s)	20, 281
BstMBI	GATC	2 cut(s)	31, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstUI	CGCG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	139, 477
BtsCI	GGATG	1 cut(s)	109
BtuMI	TCGCGA	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	4 cut(s)	51, 139, 225, 477
CviKI_1	RGCY	4 cut(s)	51, 139, 225, 477
CviQI	GTAC	1 cut(s)	574
DpnI	GATC	2 cut(s)	33, 418
DpnII	GATC	2 cut(s)	31, 416
EaeI	YGGCCR	2 cut(s)	137, 475
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	152, 200, 234
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	139, 477
HapII	CCGG	2 cut(s)	83, 140
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	83, 140
HphI	GGTGA	2 cut(s)	16, 464
Hpy166II	GTNNAC	2 cut(s)	404, 576
Hpy188I	TCNGA	2 cut(s)	36, 69
Hpy188III	TCNNGA	4 cut(s)	25, 314, 414, 527
Hpy8I	GTNNAC	2 cut(s)	404, 576
HpyAV	CCTTC	3 cut(s)	341, 352, 417
HpyCH4III	ACNGT	2 cut(s)	275, 580
HpyCH4IV	ACGT	2 cut(s)	219, 572
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	219, 572
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	31, 416
LpnPI	CCDG	6 cut(s)	96, 121, 153, 172, 231, 538
LweI	GCATC	2 cut(s)	25, 131
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	2 cut(s)	219, 572
MalI	GATC	2 cut(s)	33, 418
MboI	GATC	2 cut(s)	31, 416
MboII	GAAGA	4 cut(s)	402, 509, 512, 573
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	6 cut(s)	75, 94, 361, 385, 506, 523
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	565
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	165, 377, 534
Msp20I	TGGCCA	1 cut(s)	477
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	2 cut(s)	83, 140
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	2 cut(s)	31, 416
NlaIII	CATG	1 cut(s)	202
NruI	TCGCGA	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	565
PkrI	GCNGC	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	415
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	3 cut(s)	165, 377, 534
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	31, 416
SetI	ASST	7 cut(s)	222, 227, 250, 333, 409, 534, 575
SfaNI	GCATC	2 cut(s)	25, 131
SmlI	CTYRAG	2 cut(s)	164, 226
SmoI	CTYRAG	2 cut(s)	164, 226
SsiI	CCGC	2 cut(s)	372, 428
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	2 cut(s)	275, 580
TaiI	ACGT	2 cut(s)	222, 575
TaqI	TCGA	2 cut(s)	24, 313
TauI	GCSGC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	165, 377, 534
Tru9I	TTAA	3 cut(s)	165, 377, 534
TspDTI	ATGAA	3 cut(s)	215, 534, 555
Vha464I	CTTAAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.