Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

43474572 .. 43475750

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGCTTATAAGTAAGCGAGATTTCGAGGGCAAGGATTTTGGTCCCAACTTGTCAAGTTTGGAGATGTTAGCAATGGTTACTGCTGTTGCTGCAAAGAAATTGAATCGAGAAAAGCAACAGAGGATGATGGGTACCTTCAACTCTAAGAAAGAAGAAACTGAGGCATACCAATCAGTGTCGACTAAGCAAGAATTTCGGGTGGCAGAGAAGAGTGCTTTAAATAAGCCTCTAGTAATAACCTCGAAGAAAGGGAAGCCTACGGTAATAGAGCCTGAAAATACCCTAGGAAGTTATAGTGGGTACCTTCAACTCCAAATGGGTACCTTAAACTCCAAGAAAGAACCAGATTATGTAGTAGAGAAAGAATCTGGTTCATTCATTCCGAATAAGCCAAGGGGATGGCAGCCCAAGGAAGAAAACGGTGTTAGAGAACAAAAAGTTATGAGCTTAAAAAAGAATGGTTTGAAAAGAAAATTCCAAGATGAGCATGATTGGGAGAACAAGAAATTAGTACCCAATAGTACCGGCGACTTGCCTGAAGAGTTCAAGAACGAGATTGAAACTTCCGGACGGATTAAGGTGGAGTTGATGATTGAGAACAAATTGTTCAAGTCTGATGGTGTTGATAATGCTGCTCATGTTCATGATTGGGATTTGGATTATGCATTTAAGAACAATTACAAGAAGCCCAAGGGTTTGGTGAAAAGGCAGAAGAAAAAATTCGTACCAAATAGAAGTAGTACTCCTACTCATGACTTGCCTGAAGTGTTCAGGAAGAAGATTGAAACTTTGGGAGGGACTAAGGTGAACTTGGTGATTGAGAAGACATTGTACAAGTCTGACTTAGTACAGGGCGAAAACCGGTTGTCAATGCCTTTCAAACAAATCCGCTCCAAATTCTTGGAAGATGATGAAGTTAGAAGGCTTGCGAACTATGAAACCTTGATGGTCCCATTGATAGACACCATGCTACAAGAAAGAGAGATATGCTTGAGTCGGTGGAGCTTGCACACAAGCAAATGGTATGTGCTGAAAACTCAATGGTACAAGAAAATTGTTTTGAACAACGGACTTAGAAAAGGTGACTTGATCCAAGTTTGGTCATTCCGAGATAAGGTGAACAACCTTCACTTGGCACTTGTTTTGGTTGAGGGAAAAGGCGATCAGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

392

Amino Acids

45.34

Weight (kDa)

9.44

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	258 - 351	1.6e-12	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
Acc65I	GGTACC	3 cut(s)	134, 303, 323
AccB1I	GGYRCC	3 cut(s)	134, 303, 323
AccBSI	CCGCTC	1 cut(s)	894
AccI	GTMKAC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	892
AclWI	GGATC	1 cut(s)	1087
AcsI	RAATTY	4 cut(s)	194, 476, 722, 899
AcuI	CTGAAG	2 cut(s)	561, 786
AfiI	CCNNNNNNNGG	2 cut(s)	1117, 1135
AgeI	ACCGGT	1 cut(s)	864
AluBI	AGCT	3 cut(s)	7, 450, 1008
AluI	AGCT	3 cut(s)	7, 450, 1008
AlwI	GGATC	1 cut(s)	1087
Aor13HI	TCCGGA	1 cut(s)	569
ApeKI	GCWGC	3 cut(s)	92, 406, 635
ApoI	RAATTY	4 cut(s)	194, 476, 722, 899
AsiGI	ACCGGT	1 cut(s)	864
Asp700I	GAANNNNTTC	1 cut(s)	722
Asp718I	GGTACC	3 cut(s)	134, 303, 323
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	44, 952
AsuHPI	GGTGA	5 cut(s)	715, 820, 829, 1097, 1132
AvaII	GGWCC	2 cut(s)	44, 952
AvrII	CCTAGG	1 cut(s)	286
BanI	GGYRCC	3 cut(s)	134, 303, 323
BarI	GAAGNNNNNNTAC	2 cut(s)	818, 850
BbsI	GAAGAC	1 cut(s)	833
BbvI	GCAGC	3 cut(s)	79, 418, 622
BccI	CCATC	4 cut(s)	124, 396, 614, 943
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BfaI	CTAG	2 cut(s)	233, 287
BisI	GCNGC	3 cut(s)	93, 407, 636
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	3 cut(s)	94, 408, 637
BmcAI	AGTACT	1 cut(s)	745
Bme18I	GGWCC	2 cut(s)	44, 952
BmgT120I	GGNCC	2 cut(s)	44, 952
BmiI	GGNNCC	5 cut(s)	46, 136, 305, 325, 954
BpiI	GAAGAC	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	1015
BsaJI	CCNNGG	4 cut(s)	286, 395, 411, 693
BsaWI	WCCGGW	2 cut(s)	569, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	1117, 1135
Bse118I	RCCGGY	2 cut(s)	527, 864
Bse3DI	GCAATG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	569
BseDI	CCNNGG	4 cut(s)	286, 395, 411, 693
BseGI	GGATG	2 cut(s)	132, 407
BseLI	CCNNNNNNNGG	2 cut(s)	1117, 1135
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	79, 418, 622
BshNI	GGYRCC	3 cut(s)	134, 303, 323
BshTI	ACCGGT	1 cut(s)	864
BsiSI	CCGG	3 cut(s)	528, 570, 865
BslFI	GGGAC	3 cut(s)	30, 814, 938
BslI	CCNNNNNNNGG	2 cut(s)	1117, 1135
BsmFI	GGGAC	3 cut(s)	30, 814, 938
Bsp13I	TCCGGA	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	2 cut(s)	1092, 1165
BspACI	CCGC	1 cut(s)	892
BspCNI	CTCAG	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	569
BspHI	TCATGA	2 cut(s)	646, 754
BspLI	GGNNCC	5 cut(s)	46, 136, 305, 325, 954
BspPI	GGATC	1 cut(s)	1087
BspT107I	GGYRCC	3 cut(s)	134, 303, 323
BsrBI	CCGCTC	1 cut(s)	894
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	527, 864
BsrGI	TGTACA	1 cut(s)	834
BssAI	RCCGGY	2 cut(s)	527, 864
BssECI	CCNNGG	4 cut(s)	286, 395, 411, 693
BssMI	GATC	2 cut(s)	1092, 1165
BssT1I	CCWWGG	4 cut(s)	286, 395, 411, 693
Bst4CI	ACNGT	2 cut(s)	265, 425
Bst6I	CTCTTC	2 cut(s)	206, 537
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	2 cut(s)	930, 1010
BstDEI	CTNAG	6 cut(s)	147, 162, 186, 804, 847, 1076
BstF5I	GGATG	2 cut(s)	132, 407
BstKTI	GATC	2 cut(s)	1095, 1168
BstMBI	GATC	2 cut(s)	1092, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	79, 418, 622
BstV2I	GAAGAC	1 cut(s)	833
BstXI	CCANNNNNNTGG	3 cut(s)	402, 700, 904
BtsCI	GGATG	2 cut(s)	132, 407
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	930, 1010
CciI	TCATGA	2 cut(s)	646, 754
Cfr10I	RCCGGY	2 cut(s)	527, 864
Cfr13I	GGNCC	2 cut(s)	44, 952
CspAI	ACCGGT	1 cut(s)	864
CviAII	CATG	5 cut(s)	491, 641, 647, 755, 970
DdeI	CTNAG	6 cut(s)	147, 162, 186, 804, 847, 1076
DpnI	GATC	2 cut(s)	1094, 1167
DpnII	GATC	2 cut(s)	1092, 1165
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	206, 537
EarI	CTCTTC	2 cut(s)	206, 537
Eco130I	CCWWGG	4 cut(s)	286, 395, 411, 693
Eco47I	GGWCC	2 cut(s)	44, 952
Eco57I	CTGAAG	2 cut(s)	561, 786
EcoT14I	CCWWGG	4 cut(s)	286, 395, 411, 693
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	4 cut(s)	286, 395, 411, 693
FaeI	CATG	5 cut(s)	494, 644, 650, 758, 973
FalI	AAGNNNNNCTT	4 cut(s)	797, 829, 830, 862
FaqI	GGGAC	3 cut(s)	30, 814, 938
FatI	CATG	5 cut(s)	490, 640, 646, 754, 969
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	93, 407, 636
FokI	GGATG	2 cut(s)	139, 414
Fsp4HI	GCNGC	3 cut(s)	93, 407, 636
FspBI	CTAG	2 cut(s)	233, 287
GluI	GCNGC	3 cut(s)	93, 407, 636
HapII	CCGG	3 cut(s)	528, 570, 865
Hin1II	CATG	5 cut(s)	494, 644, 650, 758, 973
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	106, 368, 997
HpaII	CCGG	3 cut(s)	528, 570, 865
HphI	GGTGA	5 cut(s)	715, 820, 829, 1097, 1132
Hpy166II	GTNNAC	3 cut(s)	183, 811, 1123
Hpy188I	TCNGA	4 cut(s)	387, 619, 844, 1112
Hpy188III	TCNNGA	7 cut(s)	110, 550, 570, 647, 755, 775, 1169
Hpy8I	GTNNAC	3 cut(s)	183, 811, 1123
HpyAV	CCTTC	4 cut(s)	148, 317, 918, 1139
HpyCH4III	ACNGT	2 cut(s)	265, 425
HpyCH4V	TGCA	3 cut(s)	95, 668, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	6 cut(s)	147, 162, 186, 804, 847, 1076
Hsp92II	CATG	5 cut(s)	494, 644, 650, 758, 973
Kpn2I	TCCGGA	1 cut(s)	569
KpnI	GGTACC	3 cut(s)	138, 307, 327
Kzo9I	GATC	2 cut(s)	1092, 1165
LmnI	GCTCC	3 cut(s)	4, 899, 1005
Lsp1109I	GCAGC	3 cut(s)	79, 418, 622
MaeI	CTAG	2 cut(s)	233, 287
MaeIII	GTNAC	2 cut(s)	79, 1085
MalI	GATC	2 cut(s)	1094, 1167
MbiI	CCGCTC	1 cut(s)	894
MboI	GATC	2 cut(s)	1092, 1165
MluCI	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 899, 1056
MlyI	GAGTC	1 cut(s)	1006
MnlI	CCTC	7 cut(s)	22, 117, 157, 240, 253, 791, 1147
Mph1103I	ATGCAT	1 cut(s)	670
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	5 cut(s)	221, 329, 452, 579, 672
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	3 cut(s)	528, 570, 865
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	1092, 1165
NlaIII	CATG	5 cut(s)	494, 644, 650, 758, 973
NlaIV	GGNNCC	5 cut(s)	46, 136, 305, 325, 954
NmuCI	GTSAC	1 cut(s)	1085
NsiI	ATGCAT	1 cut(s)	670
PagI	TCATGA	2 cut(s)	646, 754
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	106, 368
PinAI	ACCGGT	1 cut(s)	864
PkrI	GCNGC	3 cut(s)	94, 408, 637
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
PsiI	TTATAA	1 cut(s)	11
PspN4I	GGNNCC	5 cut(s)	46, 136, 305, 325, 954
PspPI	GGNCC	2 cut(s)	44, 952
RseI	CAYNNNNRTG	1 cut(s)	645
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	5 cut(s)	221, 329, 452, 579, 672
SatI	GCNGC	3 cut(s)	93, 407, 636
Sau3AI	GATC	2 cut(s)	1092, 1165
Sau96I	GGNCC	2 cut(s)	44, 952
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	1006
SinI	GGWCC	2 cut(s)	44, 952
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
Sse9I	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 899, 1056
SsiI	CCGC	1 cut(s)	892
SspMI	CTAG	2 cut(s)	233, 287
StyI	CCWWGG	4 cut(s)	286, 395, 411, 693
TaaI	ACNGT	2 cut(s)	265, 425
TaqI	TCGA	4 cut(s)	27, 109, 182, 245
TasI	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 899, 1056
TatI	WGTACW	3 cut(s)	743, 834, 850
TfiI	GAWTC	2 cut(s)	106, 368
Tru1I	TTAA	5 cut(s)	221, 329, 452, 579, 672
Tru9I	TTAA	5 cut(s)	221, 329, 452, 579, 672
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	3 cut(s)	92, 406, 635
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	5 cut(s)	366, 370, 635, 930, 954
TspGWI	ACGGA	2 cut(s)	589, 1086
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	44, 952
XapI	RAATTY	4 cut(s)	194, 476, 722, 899
XmaJI	CCTAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	2 cut(s)	233, 287
ZrmI	AGTACT	1 cut(s)	745
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.