Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

1871552 .. 1872400

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTTCCTAGGGCAAACTGTATAATGAGTTATGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACTAGGTATTGATGCTAACGGCTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACTGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAGTGCAGATGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCAACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAACACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCATTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGATGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTAATAGTTGTGATATTGGCCAAGGAACAGAAACAAAGGAACGAGCTAGAGATGATGGAAGGAGCTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

282

Amino Acids

31.67

Weight (kDa)

8.85

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	103 - 193	5.7e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	2 cut(s)	455, 793
AcsI	RAATTY	3 cut(s)	37, 103, 295
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	16, 361
AfiI	CCNNNNNNNGG	1 cut(s)	637
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	61, 293, 485, 559
AluBI	AGCT	4 cut(s)	543, 549, 821, 840
AluI	AGCT	4 cut(s)	543, 549, 821, 840
Alw21I	GWGCWC	2 cut(s)	545, 842
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	3 cut(s)	191, 455, 793
ApoI	RAATTY	3 cut(s)	37, 103, 295
AspA2I	CCTAGG	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	176, 334, 719, 782
AvrII	CCTAGG	1 cut(s)	113
BalI	TGGCCA	2 cut(s)	457, 795
BanII	GRGCYC	2 cut(s)	545, 842
BarI	GAAGNNNNNNTAC	2 cut(s)	709, 741
Bbv12I	GWGCWC	2 cut(s)	545, 842
BccI	CCATC	4 cut(s)	680, 698, 761, 824
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	4 cut(s)	114, 245, 750, 822
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	1 cut(s)	746
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	747
BmsI	GCATC	2 cut(s)	58, 244
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	3 cut(s)	523, 529, 679
BsaAI	YACGTR	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	21, 113, 796
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	458, 458
BseDI	CCNNGG	3 cut(s)	21, 113, 796
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	93, 404
BseNI	ACTGG	2 cut(s)	458, 458
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	193, 457, 795
BsiHKAI	GWGCWC	2 cut(s)	545, 842
BsiSI	CCGG	2 cut(s)	370, 401
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	193, 457, 795
Bso31I	GGTCTC	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	545, 842
Bsp143I	GATC	4 cut(s)	234, 472, 493, 734
BspACI	CCGC	1 cut(s)	746
BspANI	GGCC	3 cut(s)	193, 457, 795
BspCNI	CTCAG	2 cut(s)	92, 405
BspPI	GGATC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	458, 458
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	3 cut(s)	21, 113, 796
BssMI	GATC	4 cut(s)	234, 472, 493, 734
BssT1I	CCWWGG	2 cut(s)	113, 796
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	266, 367
BstDEI	CTNAG	4 cut(s)	79, 309, 413, 841
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	237, 475, 496, 737
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	4 cut(s)	234, 472, 493, 734
BstX2I	RGATCY	2 cut(s)	472, 493
BstYI	RGATCY	2 cut(s)	472, 493
BsuRI	GGCC	3 cut(s)	193, 457, 795
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	266, 367
Cfr10I	RCCGGY	1 cut(s)	369
Csp6I	GTAC	2 cut(s)	15, 360
CviAII	CATG	1 cut(s)	517
CviQI	GTAC	2 cut(s)	15, 360
DdeI	CTNAG	4 cut(s)	79, 309, 413, 841
DpnI	GATC	4 cut(s)	236, 474, 495, 736
DpnII	GATC	4 cut(s)	234, 472, 493, 734
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	455, 793
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	2 cut(s)	543, 840
Eco130I	CCWWGG	2 cut(s)	113, 796
Eco24I	GRGCYC	2 cut(s)	545, 842
Eco31I	GGTCTC	1 cut(s)	599
Eco53kI	GAGCTC	2 cut(s)	543, 840
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	2 cut(s)	543, 840
EcoT14I	CCWWGG	2 cut(s)	113, 796
EcoT38I	GRGCYC	2 cut(s)	545, 842
ErhI	CCWWGG	2 cut(s)	113, 796
FaeI	CATG	1 cut(s)	520
FaiI	YATR	8 cut(s)	8, 76, 128, 138, 386, 470, 518, 552
FatI	CATG	1 cut(s)	516
Fnu4HI	GCNGC	1 cut(s)	746
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	545, 842
Fsp4HI	GCNGC	1 cut(s)	746
FspBI	CTAG	4 cut(s)	114, 245, 750, 822
GluI	GCNGC	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	193, 457, 795
HapII	CCGG	2 cut(s)	370, 401
Hin1II	CATG	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HpaII	CCGG	2 cut(s)	370, 401
HphI	GGTGA	4 cut(s)	176, 334, 719, 782
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	4 cut(s)	22, 414, 632, 844
Hpy188III	TCNNGA	1 cut(s)	732
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	6 cut(s)	55, 223, 325, 659, 735, 828
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	358, 565
HpyCH4V	TGCA	2 cut(s)	419, 440
HpyF3I	CTNAG	4 cut(s)	79, 309, 413, 841
HpySE526I	ACGT	2 cut(s)	358, 565
Hsp92II	CATG	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	234, 472, 493, 734
LmnI	GCTCC	1 cut(s)	837
LpnPI	CCDG	6 cut(s)	282, 383, 414, 439, 471, 568
LweI	GCATC	2 cut(s)	58, 244
MaeI	CTAG	4 cut(s)	114, 245, 750, 822
MaeII	ACGT	2 cut(s)	358, 565
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	4 cut(s)	236, 474, 495, 736
MboI	GATC	4 cut(s)	234, 472, 493, 734
MboII	GAAGA	8 cut(s)	160, 163, 214, 284, 497, 500, 503, 720
MflI	RGATCY	2 cut(s)	472, 493
MhlI	GDGCHC	2 cut(s)	545, 842
MlsI	TGGCCA	2 cut(s)	457, 795
MluCI	AATT	5 cut(s)	37, 56, 103, 212, 295
MluNI	TGGCCA	2 cut(s)	457, 795
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	5 cut(s)	16, 28, 183, 210, 498
Mox20I	TGGCCA	2 cut(s)	457, 795
MscI	TGGCCA	2 cut(s)	457, 795
MseI	TTAA	2 cut(s)	144, 847
Msp20I	TGGCCA	2 cut(s)	457, 795
MspI	CCGG	2 cut(s)	370, 401
NdeII	GATC	4 cut(s)	234, 472, 493, 734
NlaIII	CATG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	747
Ppu21I	YACGTR	1 cut(s)	359
Psp124BI	GAGCTC	2 cut(s)	545, 842
PsuI	RGATCY	2 cut(s)	472, 493
RsaI	GTAC	2 cut(s)	16, 361
RsaNI	GTAC	2 cut(s)	15, 360
SacI	GAGCTC	2 cut(s)	545, 842
SaqAI	TTAA	2 cut(s)	144, 847
SatI	GCNGC	1 cut(s)	746
Sau3AI	GATC	4 cut(s)	234, 472, 493, 734
SduI	GDGCHC	2 cut(s)	545, 842
SfaNI	GCATC	2 cut(s)	58, 244
SmlI	CTYRAG	3 cut(s)	502, 544, 694
SmoI	CTYRAG	3 cut(s)	502, 544, 694
Sse9I	AATT	5 cut(s)	37, 56, 103, 212, 295
SsiI	CCGC	1 cut(s)	746
SspMI	CTAG	4 cut(s)	114, 245, 750, 822
SstI	GAGCTC	2 cut(s)	545, 842
StyI	CCWWGG	2 cut(s)	113, 796
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	361, 568
TasI	AATT	5 cut(s)	37, 56, 103, 212, 295
TauI	GCSGC	1 cut(s)	748
Tru1I	TTAA	2 cut(s)	144, 847
Tru9I	TTAA	2 cut(s)	144, 847
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	401, 641
TspRI	CASTG	1 cut(s)	515
XapI	RAATTY	3 cut(s)	37, 103, 295
XmaJI	CCTAGG	1 cut(s)	113
XspI	CTAG	4 cut(s)	114, 245, 750, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.