Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

15416018 .. 15417253

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGATTCAGGGAAGGATATGTGGTCGAGGCTGTGTTTACTGGCGGAAACTGTGGTTATGGCTGCGGAGGAAGAAGAACAACGTCGTCGTCTACTTGCAGAGAAAAGAGAAGATTCAAAGAGTCAGAAGAAGACTGTCTCTGAAGAAGACGATAGCGAGAAGAGATTCTTATCTCATGTCCCGAGGAAAAAAAGGTCGTCTTTGGTAAAGAGACAACAAAAACCTAATGGTGTTTCTACTTCTTCTTCGTCGCTTCCTGATCTTAACCAAATCCCCATTGATTACGAGACTGAAACCAAACAAAACCCTAGTTTTATTGAGCGTTTGGTGTGTGATGAAGAACAACGTGTGAAGAAAGGCAAATCCAGGATTATATGGGAAGAAGAGGAGGAAGCGGACGAAGACAGCGAGAAGAGACTTTTCGAGAAGAACCTGATGAAATTTGTAGGACACAGCCAACAACAACAAAAGTTTGAAACTCTCAATGGGGCTTCATCTTCTTCATCGTTCTTAAACCTTCGTTGTTATGAGGCTTCGTTATTCTTGGATTACAACACGGTTGAGTCAGAGAAGACAGAGACGAAAGTTCTACCAAACCCTAATTACCAATCTTCTTCTCCGTCTTCATGCCTAACGGAGAACGACACAAGTCGCAAGAGGCGTGCCGTGGAACAGAGGAAGAGTGGTAAAGTCAAGAAAGTAAAGGTTTCTCCTTTGCCAAGGTTGTCTACAGAGACGCCTGAGTGGGTTTTCCAAGCGATGGGACACATGAACGCTGATGCTGAAACCCCGAAGCTGATCTTTGAAAGGACTCTGTTCAAGAGTGATGTCAACTCTAACCTCAGCCGTCTCTTAATCCCATTCCAGAAGCTAATCAGAAACGACTTCTTGACGCCAGAGGAGTGTCGAGCCATGCAGGAAGACAAAGACAAAGACGACGAAGATATTAGTGTGGGAACGATTCTTGTGTGTCAAGCCAAGCAGGAAGACGAAGACAAAGACGACGAAGATATTGGTGCGGGAACGATTCTTGTGAACCAAAGATTTAAAATGTGGGGTTTGCGTTTCAAGATATGGGGGATGGAGAAGGACTCTGGACATGGAACCTTGAATTACATTTTGAATTGGGACTGGAATGATGTCGTCAAAGGTAACAGCTTAAAAGCCGGCGACAATATCGGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTGCTCTTGACACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

411

Amino Acids

47.39

Weight (kDa)

5.54

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	244 - 328	5.1e-26	B3 domain-containing protein At2g31720-like
At2g31720-like	PF03754	328 - 383	2.1e-14	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1197
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccI	GTMKAC	2 cut(s)	91, 728
AciI	CCGC	4 cut(s)	44, 65, 395, 1019
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	737, 893
AfiI	CCNNNNNNNGG	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	7 cut(s)	117, 476, 806, 820, 1069, 1111, 1123
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	3 cut(s)	796, 871, 1158
AluI	AGCT	3 cut(s)	796, 871, 1158
Alw26I	GTCTC	7 cut(s)	142, 205, 281, 409, 572, 728, 854
Ama87I	CYCGRG	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	1197
BbsI	GAAGAC	8 cut(s)	137, 153, 408, 578, 615, 927, 993, 999
BbvCI	CCTCAGC	1 cut(s)	842
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	754, 1075
BceAI	ACGGC	3 cut(s)	650, 831, 1185
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	7 cut(s)	142, 205, 281, 409, 572, 728, 854
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	729
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	1105, 1199
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	769
BoxI	GACNNNNGTC	1 cut(s)	648
BpiI	GAAGAC	8 cut(s)	137, 153, 408, 578, 615, 927, 993, 999
BplI	GAGNNNNNCTC	2 cut(s)	1076, 1108
Bpu10I	CCTNAGC	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	169
BsaHI	GRCGYC	2 cut(s)	737, 893
BsaJI	CCNNGG	4 cut(s)	182, 666, 719, 1201
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse118I	RCCGGY	1 cut(s)	1166
Bse1I	ACTGG	2 cut(s)	45, 1136
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	4 cut(s)	182, 666, 719, 1201
BseGI	GGATG	1 cut(s)	1086
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	732, 856
BseNI	ACTGG	2 cut(s)	45, 1136
BseRI	GAGGAG	2 cut(s)	401, 914
BseXI	GCAGC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	1197
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	1167
BslFI	GGGAC	3 cut(s)	164, 777, 1142
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	7 cut(s)	142, 205, 281, 409, 572, 728, 854
BsmBI	CGTCTC	3 cut(s)	572, 728, 854
BsmFI	GGGAC	3 cut(s)	164, 777, 1142
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	259, 798
BspACI	CCGC	4 cut(s)	44, 65, 395, 1019
BspCNI	CTCAG	2 cut(s)	733, 855
BspLI	GGNNCC	2 cut(s)	1105, 1199
BspT107I	GGYRCC	1 cut(s)	1197
BsrFI	RCCGGY	1 cut(s)	1166
BsrI	ACTGG	2 cut(s)	45, 1136
BssAI	RCCGGY	1 cut(s)	1166
BssECI	CCNNGG	4 cut(s)	182, 666, 719, 1201
BssMI	GATC	2 cut(s)	259, 798
BssNI	GRCGYC	2 cut(s)	737, 893
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	52, 136, 559
Bst6I	CTCTTC	4 cut(s)	155, 378, 407, 674
BstACI	GRCGYC	2 cut(s)	737, 893
BstC8I	GCNNGC	2 cut(s)	663, 1168
BstDEI	CTNAG	2 cut(s)	741, 842
BstDSI	CCRYGG	2 cut(s)	666, 1201
BstF5I	GGATG	1 cut(s)	1086
BstKTI	GATC	2 cut(s)	262, 801
BstMAI	GTCTC	7 cut(s)	142, 205, 281, 409, 572, 728, 854
BstMBI	GATC	2 cut(s)	259, 798
BstNI	CCWGG	1 cut(s)	367
BstPAI	GACNNNNGTC	1 cut(s)	648
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	8 cut(s)	137, 153, 408, 578, 615, 927, 993, 999
BtgI	CCRYGG	2 cut(s)	666, 1201
BtgZI	GCGATG	1 cut(s)	773
BtsCI	GGATG	1 cut(s)	1086
Cac8I	GCNNGC	2 cut(s)	663, 1168
Cfr10I	RCCGGY	1 cut(s)	1166
CseI	GACGC	2 cut(s)	745, 901
CviAII	CATG	6 cut(s)	176, 627, 769, 913, 1100, 1230
DdeI	CTNAG	2 cut(s)	741, 842
DpnI	GATC	2 cut(s)	261, 800
DpnII	GATC	2 cut(s)	259, 798
DraI	TTTAAA	1 cut(s)	1048
Eam1104I	CTCTTC	4 cut(s)	155, 378, 407, 674
EarI	CTCTTC	4 cut(s)	155, 378, 407, 674
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	3 cut(s)	572, 728, 854
FaeI	CATG	6 cut(s)	179, 630, 772, 916, 1103, 1233
FalI	AAGNNNNNCTT	6 cut(s)	152, 184, 184, 216, 785, 817
FaqI	GGGAC	3 cut(s)	164, 777, 1142
FatI	CATG	6 cut(s)	175, 626, 768, 912, 1099, 1229
FauI	CCCGC	1 cut(s)	1012
FblI	GTMKAC	2 cut(s)	91, 728
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	1093
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	63
HapII	CCGG	1 cut(s)	1167
HgaI	GACGC	2 cut(s)	745, 901
Hin1I	GRCGYC	2 cut(s)	737, 893
Hin1II	CATG	6 cut(s)	179, 630, 772, 916, 1103, 1233
HincII	GTYRAC	1 cut(s)	832
HindII	GTYRAC	1 cut(s)	832
HpaII	CCGG	1 cut(s)	1167
Hpy166II	GTNNAC	5 cut(s)	38, 92, 729, 832, 1036
Hpy188I	TCNGA	4 cut(s)	126, 142, 568, 878
Hpy8I	GTNNAC	5 cut(s)	38, 92, 729, 832, 1036
Hpy99I	CGWCG	5 cut(s)	87, 90, 253, 941, 1007
HpyAV	CCTTC	3 cut(s)	7, 527, 1081
HpyCH4III	ACNGT	3 cut(s)	52, 136, 559
HpyCH4IV	ACGT	2 cut(s)	82, 346
HpyCH4V	TGCA	2 cut(s)	98, 916
HpyF3I	CTNAG	2 cut(s)	741, 842
HpySE526I	ACGT	2 cut(s)	82, 346
Hsp92I	GRCGYC	2 cut(s)	737, 893
Hsp92II	CATG	6 cut(s)	179, 630, 772, 916, 1103, 1233
KroI	GCCGGC	1 cut(s)	1166
KroNI	GCCGGC	1 cut(s)	1168
Kzo9I	GATC	2 cut(s)	259, 798
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	82, 346
MaeIII	GTNAC	1 cut(s)	1151
MalI	GATC	2 cut(s)	261, 800
MboI	GATC	2 cut(s)	259, 798
MluCI	AATT	4 cut(s)	440, 601, 1111, 1123
MlyI	GAGTC	5 cut(s)	130, 572, 805, 1085, 1215
MroNI	GCCGGC	1 cut(s)	1166
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	5 cut(s)	264, 512, 854, 1047, 1160
MspI	CCGG	1 cut(s)	1167
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
NaeI	GCCGGC	1 cut(s)	1168
NdeII	GATC	2 cut(s)	259, 798
NgoMIV	GCCGGC	1 cut(s)	1166
NlaIII	CATG	6 cut(s)	179, 630, 772, 916, 1103, 1233
NlaIV	GGNNCC	2 cut(s)	1105, 1199
PcsI	WCGNNNNNNNCGW	2 cut(s)	405, 658
PdiI	GCCGGC	1 cut(s)	1168
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	5 cut(s)	5, 113, 165, 961, 1027
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	5 cut(s)	129, 571, 805, 1085, 1214
PpsI	GAGTC	5 cut(s)	129, 571, 805, 1085, 1214
PshAI	GACNNNNGTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	1105, 1199
SaqAI	TTAA	5 cut(s)	264, 512, 854, 1047, 1160
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	259, 798
SchI	GAGTC	5 cut(s)	130, 572, 805, 1085, 1215
ScrFI	CCNGG	1 cut(s)	367
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	729
Sse9I	AATT	4 cut(s)	440, 601, 1111, 1123
SsiI	CCGC	4 cut(s)	44, 65, 395, 1019
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	3 cut(s)	52, 136, 559
TaiI	ACGT	2 cut(s)	85, 349
TaqI	TCGA	3 cut(s)	26, 423, 907
TaqII	GACCGA	1 cut(s)	1169
TasI	AATT	4 cut(s)	440, 601, 1111, 1123
TfiI	GAWTC	5 cut(s)	5, 113, 165, 961, 1027
Tru1I	TTAA	5 cut(s)	264, 512, 854, 1047, 1160
Tru9I	TTAA	5 cut(s)	264, 512, 854, 1047, 1160
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	6 cut(s)	351, 452, 483, 492, 615, 785
TspGWI	ACGGA	2 cut(s)	609, 650
Van91I	CCANNNNNTGG	1 cut(s)	760
XapI	RAATTY	1 cut(s)	440
XmiI	GTMKAC	2 cut(s)	91, 728
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.