Rw3G001230

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000766
Physical Location & Seq
Reverse (-)
1003645 .. 1003920
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G001230.1

Sequence Viewer

Length: 276 bp
ATGAAAGTTGAAAAGTTTCTTAATGAGCAAGAACTGGGGGTTATCAGTGCACAAGTAGGCGTCCCGGTGCGAGTGATAGGACCATTATTTGAGTCGAATTTAGAGTTGAGGAAGTGGAATCTCATGACTGAAGACAATTCAGCCTTATTCTATGTGTTAGTAAACGGTTGGGCAGAATTTGTTCAAAGGAACCATCTAAGGCGAAGTGATACAATTCAGCTGTGGTCGTTCCGTATTAACGGCGATCTACGCTTCGCAATTGTTAAACTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

91

Amino Acids

10.62

Weight (kDa)

6.58

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 97, 176
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 60
AgsI TTSAA 2 cut(s) 11, 185
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 97, 176
Asp700I GAANNNNTTC 2 cut(s) 15, 180
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 52
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 256
BcnI CCSGG 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 244
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 39
BssMI GATC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 197
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 49
CviAII CATG 1 cut(s) 124
CviJI RGCY 2 cut(s) 143, 220
CviKI_1 RGCY 2 cut(s) 143, 220
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 125, 153
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 123
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 127
HinfI GANTC 2 cut(s) 92, 118
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 50, 163
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 2 cut(s) 50, 163
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 20, 78
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 143
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 5 cut(s) 97, 136, 176, 213, 258
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 1 cut(s) 102
MroXI GAANNNNTTC 2 cut(s) 15, 180
MseI TTAA 3 cut(s) 21, 237, 264
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 65
MunI CAATTG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 249
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 191
PagI TCATGA 1 cut(s) 123
PdmI GAANNNNTTC 2 cut(s) 15, 180
PfeI GAWTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 220
SaqAI TTAA 3 cut(s) 21, 237, 264
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 52
SetI ASST 1 cut(s) 222
SgeI CNNG 7 cut(s) 41, 47, 65, 76, 77, 83, 136
SinI GGWCC 1 cut(s) 80
Sse9I AATT 5 cut(s) 97, 136, 176, 213, 258
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 95
TasI AATT 5 cut(s) 97, 136, 176, 213, 258
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 3 cut(s) 21, 237, 264
Tru9I TTAA 3 cut(s) 21, 237, 264
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 52
VneI GTGCAC 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 2 cut(s) 97, 176
XmnI GAANNNNTTC 2 cut(s) 15, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.