Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

18390413 .. 18391417

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATAGAAATCATCATGATCATCTCGATGCTGCGGGGAAGGATATGTGGTCACGTTTAAGTGATTTGGCGGATAAAGCTGATATGCTATATGAAAGAGAAGGAATATCCAAAGACCGCAAGAGTGTCTCAGAAGAAGAAGAAGAAAAGAAGACGAGATTCAGTATTTTGGTGGATCTCGTGGGTAGGTTATGTGATCAAGAGGAACGTCGTACTCTTGGATCATCTCCTACAAAAACCAACACTCTTTTTGAGGGTAGTGAAAAGAGCCACTTGGATCATCACTTGGATCATCTCCCACAAAAACCAAGGTCTTCCCTTGAGTGTTTTTTTACTAGAGTATACACGCGACGAAACCATAATAACGTTTCTACTTCTTCATCGCTCTTCAACACGGATGAGTTTGAGAGGACGGAGACTAAAAGCCCTACAATCCGTAATTCCCAATCTTCACCGTCTTCGTGTCTAATGGAGAACACAAAACGCAAGAGGTATCAAAGTAGTGGTAAATCCAAGAAACCAAAGTTTGATCCTTTCTCACTGACTGCGGCGAGAGAGACGCCAGAGTGGCTTTTAGATGTGATGAGAAAGATGAAGGGAGCCGAAGGACCGATCAAACTGATCTACGAGAAGACTTTGACCGCAACTGACGTCAAGCCAAGCGAGAGTCGTCTCTTAATACCTTTCAATAAGTTACTCAGAAACGACTTCTTGACTCCTGAGGAGTCTCGAGCCATAGCCATAGATAAAGAAGAAGAAGAAGAAGACACCAAGAAAATTGGTGTGAAAACGATTATCGTGAATCAATTCTCTAAAGAATGGAGTTTACGTTTTCTGATATGGGTGATGAAGAAGAAAAAATCTGGAAATGGAACCTTGTACTACACTTTGAATCGGGGGTGGAATGGTGTCGTCTCGGGTAACAAGCTCAAAGCCAACGACAATATTAGTCTTTGGACTTTCAGGTGTGGTGGAGTCCTCTGTTTTGCCCTTGAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

334

Amino Acids

38.51

Weight (kDa)

9.08

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	185 - 306	1.3e-41	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	349
AciI	CCGC	5 cut(s)	35, 71, 118, 548, 642
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	5 cut(s)	183, 229, 285, 297, 524
AcyI	GRCGYC	2 cut(s)	560, 651
AfaI	GTAC	2 cut(s)	214, 881
AgsI	TTSAA	3 cut(s)	391, 688, 892
AluBI	AGCT	2 cut(s)	80, 928
AluI	AGCT	2 cut(s)	80, 928
Alw26I	GTCTC	6 cut(s)	133, 410, 551, 677, 732, 919
AlwI	GGATC	5 cut(s)	183, 229, 285, 297, 524
Ama87I	CYCGRG	2 cut(s)	729, 916
ApeKI	GCWGC	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	806
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	2 cut(s)	444, 856
AvaI	CYCGRG	2 cut(s)	729, 916
AvaII	GGWCC	1 cut(s)	608
AxyI	CCTNAGG	1 cut(s)	720
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	5 cut(s)	158, 306, 450, 638, 771
BbvI	GCAGC	1 cut(s)	19
BclI	TGATCA	2 cut(s)	19, 196
BcoDI	GTCTC	6 cut(s)	133, 410, 551, 677, 732, 919
BfaI	CTAG	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	33, 549
BlsI	GCNGC	2 cut(s)	34, 550
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	2 cut(s)	729, 916
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	601, 874
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	5 cut(s)	158, 306, 450, 638, 771
BpuEI	CTTGAG	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	560, 651
BsaJI	CCNNGG	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bse21I	CCTNAGG	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	144, 711, 712
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	349
BsiHKCI	CYCGRG	2 cut(s)	729, 916
BsmAI	GTCTC	6 cut(s)	133, 410, 551, 677, 732, 919
BsmBI	CGTCTC	3 cut(s)	551, 677, 919
BsoBI	CYCGRG	2 cut(s)	729, 916
Bsp143I	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
BspACI	CCGC	5 cut(s)	35, 71, 118, 548, 642
BspCNI	CTCAG	3 cut(s)	143, 711, 712
BspFNI	CGCG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	601, 874
BspPI	GGATC	5 cut(s)	183, 229, 285, 297, 524
BspQI	GCTCTTC	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	2 cut(s)	560, 651
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	392
BstACI	GRCGYC	2 cut(s)	560, 651
BstDEI	CTNAG	3 cut(s)	130, 698, 720
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	9 cut(s)	22, 178, 199, 224, 280, 292, 532, 615, 624
BstMAI	GTCTC	6 cut(s)	133, 410, 551, 677, 732, 919
BstMBI	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 568
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	5 cut(s)	158, 306, 450, 638, 771
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	720
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	608
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	213, 880
CviAII	CATG	1 cut(s)	17
CviQI	GTAC	2 cut(s)	213, 880
DdeI	CTNAG	3 cut(s)	130, 698, 720
DpnI	GATC	9 cut(s)	21, 177, 198, 223, 279, 291, 531, 614, 623
DpnII	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	608
Eco81I	CCTNAGG	1 cut(s)	720
Eco88I	CYCGRG	2 cut(s)	729, 916
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
Esp3I	CGTCTC	3 cut(s)	551, 677, 919
FaeI	CATG	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	1 cut(s)	16
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	2 cut(s)	19, 196
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	33, 549
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	33, 549
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	2 cut(s)	33, 549
HgaI	GACGC	1 cut(s)	568
Hin1I	GRCGYC	2 cut(s)	560, 651
Hin1II	CATG	1 cut(s)	20
HinfI	GANTC	7 cut(s)	159, 667, 715, 725, 802, 892, 975
HphI	GGTGA	2 cut(s)	444, 856
Hpy166II	GTNNAC	2 cut(s)	343, 827
Hpy188I	TCNGA	3 cut(s)	133, 701, 837
Hpy188III	TCNNGA	8 cut(s)	17, 26, 200, 712, 719, 729, 799, 864
Hpy8I	GTNNAC	2 cut(s)	343, 827
Hpy99I	CGWCG	2 cut(s)	213, 354
HpyAV	CCTTC	4 cut(s)	34, 95, 589, 599
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	5 cut(s)	55, 208, 366, 651, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 568
HpyF3I	CTNAG	3 cut(s)	130, 698, 720
HpySE526I	ACGT	5 cut(s)	55, 208, 366, 651, 829
Hsp92I	GRCGYC	2 cut(s)	560, 651
Hsp92II	CATG	1 cut(s)	20
Ksp22I	TGATCA	2 cut(s)	19, 196
Kzo9I	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	599
LpnPI	CCDG	4 cut(s)	576, 732, 849, 949
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	5 cut(s)	55, 208, 366, 651, 829
MaeIII	GTNAC	3 cut(s)	51, 693, 920
MalI	GATC	9 cut(s)	21, 177, 198, 223, 279, 291, 531, 614, 623
MboI	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	439, 777, 806
MlyI	GAGTC	4 cut(s)	676, 709, 734, 984
MnlI	CCTC	6 cut(s)	196, 247, 402, 483, 715, 989
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	2 cut(s)	59, 677
MslI	CAYNNNNRTG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	77, 568
NdeII	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	601, 874
NmuCI	GTSAC	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	729
PagI	TCATGA	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	3 cut(s)	159, 802, 892
PkrI	GCNGC	2 cut(s)	34, 550
PleI	GAGTC	4 cut(s)	675, 709, 733, 983
PpsI	GAGTC	4 cut(s)	675, 709, 733, 983
Psp1406I	AACGTT	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	601, 874
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	214, 881
RsaNI	GTAC	2 cut(s)	213, 880
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	59, 677
SatI	GCNGC	2 cut(s)	33, 549
Sau3AI	GATC	9 cut(s)	19, 175, 196, 221, 277, 289, 529, 612, 621
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	4 cut(s)	676, 709, 734, 984
SfaNI	GCATC	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	320, 729, 992
SmoI	CTYRAG	3 cut(s)	320, 729, 992
Sse9I	AATT	3 cut(s)	439, 777, 806
SsiI	CCGC	5 cut(s)	35, 71, 118, 548, 642
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	5 cut(s)	58, 211, 369, 654, 832
TaqI	TCGA	2 cut(s)	27, 730
TaqII	GACCGA	1 cut(s)	625
TasI	AATT	3 cut(s)	439, 777, 806
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	159, 802, 892
Tru1I	TTAA	2 cut(s)	59, 677
Tru9I	TTAA	2 cut(s)	59, 677
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	51
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	17, 108, 369, 608, 863
TspGWI	ACGGA	3 cut(s)	410, 425, 428
TspRI	CASTG	1 cut(s)	546
VpaK11BI	GGWCC	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.