Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

52785385 .. 52786521

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGTAGTAGTAGTACCCCCAAGATTAAAGAACCCAATTATGTAGCTGAAGCATTTTCATTTGGCTCCAAAGAGACGTATGCTAATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATGATCATGGCAAGAGTTTTCAATTGAAACAACAGAAGATAATTTTGTTGCACAAGGAAATTGGTAGTACCTCCAAGACTAAAGAATCAAATACATCAGTAGGAAGAGAATTGGAGCAGGATCCATTATACTCAGTTGGCACAGTAAGGAGTGAAAGGTCTTTCCCTAGGGAAAAGTATATAACGAGCTCTGATTTGGGGTTTCAGGAAAAGAATGGGTTGCCAAAGAAGAAGAGTATTAATGGGGTTGAGTATGATACAGATTGGGGTCTAAAGTCCAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGGGATTGAGGCCGAAGGAGCATGTCAGAGCACCAAAATATAATACTGATCCTAATGACTTGCCTGAAGAGTTGAAAAGGAAGATCGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAAGCCAAGATGACTATGGTGATAGAAAAGCATTTGTTCAGTACTGATATGGCAAAAAGCGCTAATCGGTTGTCAATGCCTCTAAAACAAATCAAACCGGAGAGTTTTCTGGACGAGGATGAGATAAAGTTTCTTGCAATTCAAGAAGATTGGCCGGTTTCTGTTATAAGTCCCCTACTAGAAGATGAAGCTCTGACCTTCAGGCAGTGGAACATGAAAAAGGATAACGGCAGCGTTAGCTCAAGTTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAAAGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTTTGGTTGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGAAGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTACTAGTTGTGATATTGGCCAAGGAACAGAAGCAAAGGAACAAGAGATGATAGAAGGAGCTCAGATTAATGATGGGAGCAGTAGTGGGAATGGGAGAACTTCAACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

378

Amino Acids

42.48

Weight (kDa)

8.51

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	187 - 276	1.2e-12	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AciI	CCGC	1 cut(s)	995
AclWI	GGATC	3 cut(s)	236, 249, 479
AcoI	YGGCCR	2 cut(s)	704, 1042
AcuI	CTGAAG	3 cut(s)	69, 522, 736
AfaI	GTAC	4 cut(s)	16, 190, 595, 1027
AfeI	AGCGCT	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	8 cut(s)	143, 148, 511, 542, 551, 695, 808, 1128
AhlI	ACTAGT	1 cut(s)	1028
AluBI	AGCT	5 cut(s)	47, 309, 743, 792, 1085
AluI	AGCT	5 cut(s)	47, 309, 743, 792, 1085
Alw21I	GWGCWC	3 cut(s)	311, 469, 1087
Alw26I	GTCTC	2 cut(s)	68, 848
AlwI	GGATC	3 cut(s)	236, 249, 479
Aor51HI	AGCGCT	1 cut(s)	613
AoxI	GGCC	3 cut(s)	446, 704, 1042
ApeKI	GCWGC	1 cut(s)	783
AseI	ATTAAT	2 cut(s)	360, 1092
AspA2I	CCTAGG	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	614
AsuHPI	GGTGA	3 cut(s)	583, 968, 1031
AvrII	CCTAGG	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	1044
BamHI	GGATCC	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	311, 1087
BarI	GAAGNNNNNNTAC	2 cut(s)	958, 990
Bbv12I	GWGCWC	3 cut(s)	311, 469, 1087
BbvI	GCAGC	1 cut(s)	795
BccI	CCATC	3 cut(s)	929, 1010, 1091
BceAI	ACGGC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	68, 848
BcuI	ACTAGT	1 cut(s)	1028
BfaI	CTAG	4 cut(s)	288, 731, 999, 1029
BfoI	RGCGCY	1 cut(s)	615
BisI	GCNGC	2 cut(s)	784, 995
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	2 cut(s)	785, 996
BmcAI	AGTACT	2 cut(s)	595, 1027
BmiI	GGNNCC	2 cut(s)	67, 243
BpuEI	CTTGAG	2 cut(s)	778, 928
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	2 cut(s)	287, 1045
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	1093, 1123
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	706
BseDI	CCNNGG	2 cut(s)	287, 1045
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	2 cut(s)	267, 1100
BseXI	GCAGC	1 cut(s)	795
BshFI	GGCC	3 cut(s)	448, 706, 1044
BsiHKAI	GWGCWC	3 cut(s)	311, 469, 1087
BsiSI	CCGG	2 cut(s)	650, 707
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	2 cut(s)	68, 848
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	448, 706, 1044
Bso31I	GGTCTC	1 cut(s)	848
Bsp1286I	GDGCHC	3 cut(s)	311, 469, 1087
Bsp143I	GATC	5 cut(s)	124, 241, 484, 519, 983
BspACI	CCGC	1 cut(s)	995
BspANI	GGCC	3 cut(s)	448, 706, 1044
BspCNI	CTCAG	2 cut(s)	266, 1099
BspLI	GGNNCC	2 cut(s)	67, 243
BspPI	GGATC	3 cut(s)	236, 249, 479
BspTNI	GGTCTC	1 cut(s)	848
BsrFI	RCCGGY	1 cut(s)	706
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	2 cut(s)	287, 1045
BssMI	GATC	5 cut(s)	124, 241, 484, 519, 983
BssT1I	CCWWGG	2 cut(s)	287, 1045
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	3 cut(s)	220, 347, 498
BstDEI	CTNAG	2 cut(s)	253, 1086
BstF5I	GGATG	1 cut(s)	676
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	5 cut(s)	127, 244, 487, 522, 986
BstMAI	GTCTC	2 cut(s)	68, 848
BstMBI	GATC	5 cut(s)	124, 241, 484, 519, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	454, 611, 789
BstNSI	RCATGY	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	448, 706, 1044
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	764
BtsIMutI	CAGTG	1 cut(s)	764
CfoI	GCGC	1 cut(s)	614
Cfr10I	RCCGGY	1 cut(s)	706
Csp6I	GTAC	4 cut(s)	15, 189, 594, 1026
CviAII	CATG	3 cut(s)	128, 458, 766
CviQI	GTAC	4 cut(s)	15, 189, 594, 1026
DdeI	CTNAG	2 cut(s)	253, 1086
DpnI	GATC	5 cut(s)	126, 243, 486, 521, 985
DpnII	GATC	5 cut(s)	124, 241, 484, 519, 983
EaeI	YGGCCR	2 cut(s)	704, 1042
Eam1104I	CTCTTC	3 cut(s)	220, 347, 498
EarI	CTCTTC	3 cut(s)	220, 347, 498
Ecl136II	GAGCTC	2 cut(s)	309, 1085
Eco130I	CCWWGG	2 cut(s)	287, 1045
Eco24I	GRGCYC	2 cut(s)	311, 1087
Eco31I	GGTCTC	1 cut(s)	848
Eco47III	AGCGCT	1 cut(s)	613
Eco53kI	GAGCTC	2 cut(s)	309, 1085
Eco57I	CTGAAG	3 cut(s)	69, 522, 736
EcoICRI	GAGCTC	2 cut(s)	309, 1085
EcoT14I	CCWWGG	2 cut(s)	287, 1045
EcoT38I	GRGCYC	2 cut(s)	311, 1087
ErhI	CCWWGG	2 cut(s)	287, 1045
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	3 cut(s)	131, 461, 769
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	3 cut(s)	127, 457, 765
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	784, 995
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	2 cut(s)	311, 1087
Fsp4HI	GCNGC	2 cut(s)	784, 995
FspBI	CTAG	4 cut(s)	288, 731, 999, 1029
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	2 cut(s)	784, 995
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	448, 706, 1044
HapII	CCGG	2 cut(s)	650, 707
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	3 cut(s)	131, 461, 769
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HinfI	GANTC	2 cut(s)	103, 206
HpaII	CCGG	2 cut(s)	650, 707
HphI	GGTGA	3 cut(s)	583, 968, 1031
Hpy188I	TCNGA	5 cut(s)	313, 464, 747, 881, 1089
Hpy188III	TCNNGA	5 cut(s)	107, 326, 662, 695, 981
HpyAV	CCTTC	8 cut(s)	418, 445, 527, 760, 908, 947, 984, 1073
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	77, 814
HpyCH4V	TGCA	2 cut(s)	172, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	454, 611, 789
HpyF3I	CTNAG	2 cut(s)	253, 1086
HpySE526I	ACGT	2 cut(s)	77, 814
Hsp92II	CATG	3 cut(s)	131, 461, 769
HspAI	GCGC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 241, 484, 519, 983
LmnI	GCTCC	5 cut(s)	71, 235, 454, 1082, 1101
LpnPI	CCDG	8 cut(s)	224, 311, 513, 647, 663, 720, 739, 817
Lsp1109I	GCAGC	1 cut(s)	795
MaeI	CTAG	4 cut(s)	288, 731, 999, 1029
MaeII	ACGT	2 cut(s)	77, 814
MalI	GATC	5 cut(s)	126, 243, 486, 521, 985
MboI	GATC	5 cut(s)	124, 241, 484, 519, 983
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	3 cut(s)	311, 469, 1087
MlsI	TGGCCA	1 cut(s)	1044
MluCI	AATT	6 cut(s)	37, 143, 162, 180, 230, 690
MluNI	TGGCCA	1 cut(s)	1044
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	797
MnlI	CCTC	5 cut(s)	103, 202, 438, 642, 661
Mox20I	TGGCCA	1 cut(s)	1044
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	4 cut(s)	27, 360, 420, 1092
Msp20I	TGGCCA	1 cut(s)	1044
MspI	CCGG	2 cut(s)	650, 707
MunI	CAATTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	454, 611, 789
NdeII	GATC	5 cut(s)	124, 241, 484, 519, 983
NlaIII	CATG	3 cut(s)	131, 461, 769
NlaIV	GGNNCC	2 cut(s)	67, 243
NspI	RCATGY	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	785, 996
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
PshBI	ATTAAT	2 cut(s)	360, 1092
PsiI	TTATAA	1 cut(s)	719
Psp124BI	GAGCTC	2 cut(s)	311, 1087
PspN4I	GGNNCC	2 cut(s)	67, 243
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	4 cut(s)	16, 190, 595, 1027
RsaNI	GTAC	4 cut(s)	15, 189, 594, 1026
SacI	GAGCTC	2 cut(s)	311, 1087
SaqAI	TTAA	4 cut(s)	27, 360, 420, 1092
SatI	GCNGC	2 cut(s)	784, 995
Sau3AI	GATC	5 cut(s)	124, 241, 484, 519, 983
ScaI	AGTACT	2 cut(s)	595, 1027
SchI	GAGTC	1 cut(s)	112
SduI	GDGCHC	3 cut(s)	311, 469, 1087
SmlI	CTYRAG	2 cut(s)	793, 943
SmoI	CTYRAG	2 cut(s)	793, 943
SpeI	ACTAGT	1 cut(s)	1028
Sse9I	AATT	6 cut(s)	37, 143, 162, 180, 230, 690
SsiI	CCGC	1 cut(s)	995
SspMI	CTAG	4 cut(s)	288, 731, 999, 1029
SstI	GAGCTC	2 cut(s)	311, 1087
StyI	CCWWGG	2 cut(s)	287, 1045
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	80, 817
TaqI	TCGA	2 cut(s)	106, 522
TasI	AATT	6 cut(s)	37, 143, 162, 180, 230, 690
TatI	WGTACW	2 cut(s)	593, 1025
TauI	GCSGC	1 cut(s)	997
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	27, 360, 420, 1092
Tru9I	TTAA	4 cut(s)	27, 360, 420, 1092
TscAI	CASTG	1 cut(s)	764
TseI	GCWGC	1 cut(s)	783
TspDTI	ATGAA	5 cut(s)	48, 104, 428, 753, 782
TspRI	CASTG	1 cut(s)	764
VspI	ATTAAT	2 cut(s)	360, 1092
XceI	RCATGY	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmaJI	CCTAGG	1 cut(s)	287
XspI	CTAG	4 cut(s)	288, 731, 999, 1029
ZrmI	AGTACT	2 cut(s)	595, 1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.