Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8079062.1

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 583

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8079062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgagttgtgatattaagaagaagagtgctaatggtgatgatgataaacaatggggtttgaggccgaagccgaagaatatcaaattgaggaagccaaagaaggagatcacaacacaaattattgatgctaacggtttgcctgaagaatacaagagaaagattgaaaattttgataaggctaaggcgactttggtgatgcagaaggagttgaccaagactgatttgtcacgtaccgcttgccggttgtcaatgcctatgaaccaaatcaaaccggagagttttctgaatgcagaagagataaagtttcttgcaaaacaaaatgactggccagtttcggttatagatcccctacttgaagaagaagatttgaccttgaggcagtggaacatggaaaagaaaacgggtaagacgagctcaagctatgtgttgaaaacacgttggaatgaagttgccgataaaaacaatctcaaggaaaaagacgtagtacaagtttggtcattccgggatgtgggaaacaaccttcactttgctattgttttggttaagaagggtgagagaaagggtggtgaacatagtagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

193

Amino Acids

22.29

Weight (kDa)

9.43

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	232, 486
AfiI	CCNNNNNNNGG	2 cut(s)	240, 508
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	164, 356, 430
AluBI	AGCT	2 cut(s)	414, 420
AluI	AGCT	2 cut(s)	414, 420
Alw21I	GWGCWC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	62, 326
ApoI	RAATTY	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	4 cut(s)	47, 205, 563, 578
BalI	TGGCCA	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	115, 186
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	3 cut(s)	394, 400, 452
BpuMI	CCSGG	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 508
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	329, 329
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	240, 508
BseNI	ACTGG	2 cut(s)	329, 329
BshFI	GGCC	2 cut(s)	64, 328
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	3 cut(s)	241, 272, 502
BslI	CCNNNNNNNGG	2 cut(s)	240, 508
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	64, 328
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	105, 343
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	64, 328
BspPI	GGATC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	329, 329
BssAI	RCCGGY	1 cut(s)	240
BssMI	GATC	2 cut(s)	105, 343
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	17, 288
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	108, 346
BstMBI	GATC	2 cut(s)	105, 343
BstSCI	CCNGG	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	64, 328
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	231, 485
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	7 cut(s)	64, 70, 94, 179, 328, 414, 420
CviKI_1	RGCY	7 cut(s)	64, 70, 94, 179, 328, 414, 420
CviQI	GTAC	2 cut(s)	231, 485
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	107, 345
DpnII	GATC	2 cut(s)	105, 343
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	2 cut(s)	17, 288
EarI	CTCTTC	2 cut(s)	17, 288
Ecl136II	GAGCTC	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	1 cut(s)	391
FaiI	YATR	5 cut(s)	257, 341, 389, 423, 573
FatI	CATG	1 cut(s)	387
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	64, 328
HapII	CCGG	3 cut(s)	241, 272, 502
Hin1II	CATG	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HpaII	CCGG	3 cut(s)	241, 272, 502
HphI	GGTGA	4 cut(s)	47, 205, 563, 578
Hpy166II	GTNNAC	2 cut(s)	210, 569
Hpy188I	TCNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	210, 569
HpyAV	CCTTC	4 cut(s)	94, 196, 530, 541
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	3 cut(s)	229, 436, 480
HpyCH4V	TGCA	3 cut(s)	199, 290, 311
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	3 cut(s)	229, 436, 480
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	105, 343
LpnPI	CCDG	6 cut(s)	153, 254, 285, 310, 342, 515
LweI	GCATC	2 cut(s)	115, 186
MaeII	ACGT	3 cut(s)	229, 436, 480
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	107, 345
MboI	GATC	2 cut(s)	105, 343
MboII	GAAGA	8 cut(s)	31, 34, 85, 155, 305, 368, 371, 374
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	3 cut(s)	83, 117, 166
MluNI	TGGCCA	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	3 cut(s)	54, 81, 369
Mox20I	TGGCCA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	328
MseI	TTAA	2 cut(s)	15, 543
Msp20I	TGGCCA	1 cut(s)	328
MspI	CCGG	3 cut(s)	241, 272, 502
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	2 cut(s)	105, 343
NlaIII	CATG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	232, 486
RsaNI	GTAC	2 cut(s)	231, 485
SacI	GAGCTC	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	15, 543
Sau3AI	GATC	2 cut(s)	105, 343
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	7 cut(s)	232, 374, 416, 422, 439, 483, 522
SfaNI	GCATC	2 cut(s)	115, 186
SmlI	CTYRAG	3 cut(s)	373, 415, 467
SmoI	CTYRAG	3 cut(s)	373, 415, 467
Sse9I	AATT	3 cut(s)	83, 117, 166
SsiI	CCGC	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	3 cut(s)	232, 439, 483
TasI	AATT	3 cut(s)	83, 117, 166
TatI	WGTACW	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	15, 543
Tru9I	TTAA	2 cut(s)	15, 543
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	272, 459
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.