RchiOBHm_Chr1g0380951

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000766
Physical Location & Seq
Reverse (-)
66375180 .. 66375905
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60416

Sequence Viewer

Length: 726 bp
ATGAAGATTAAGAAGGAAAAGGGGTTGGGATTGAGGCCGAAGGAGCATGTCAGAGCACCAAAATATAATACTGATCCTAATGACTTGCCTGAAGAGTTGAAAAGGAAGATCGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAAGCCAAGATGACTATGGTGATAGAAAAGCATTTGTTCAGTACTGATATGGCAAAAAGCGCTAATCGGTTGTCAATGCCTCTAAAACAAATCAAACCGGAGAGTTTTCTGGACGAGGATGAGATAAAGTTTCTTGCAATTCAAGAAGATTGGCCAGTTTCGGTTATAAGTCCCCTACTAGAAGATGAAGCTCTGACCTTCAGGCAGTGGAACATGAAAAAGGATAACGGCAGCGTTAGCTCAAGTTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACTAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGAAGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAATGATGTTGATGGTGAAAGTACTAGTTGTGATATTGGCCAAGGAACAGAAGCAAAGGAACAAGAGATGATAGAAGGAGCTCAGATTAATGATGGGAGCAGTAGTGGGAATGGGAGAACTTCAACACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

241

Amino Acids

26.99

Weight (kDa)

5.8

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 50 - 139 4.8e-13 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AciI CCGC 1 cut(s) 584
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 2 cut(s) 293, 631
AcuI CTGAAG 2 cut(s) 111, 325
AfaI GTAC 2 cut(s) 184, 616
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 6 cut(s) 100, 131, 140, 284, 397, 717
AhlI ACTAGT 1 cut(s) 617
AluBI AGCT 3 cut(s) 332, 381, 674
AluI AGCT 3 cut(s) 332, 381, 674
Alw21I GWGCWC 2 cut(s) 58, 676
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 3 cut(s) 35, 293, 631
ApeKI GCWGC 1 cut(s) 372
AseI ATTAAT 1 cut(s) 681
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 172, 557, 620
BalI TGGCCA 2 cut(s) 295, 633
BanII GRGCYC 1 cut(s) 676
BarI GAAGNNNNNNTAC 2 cut(s) 547, 579
Bbv12I GWGCWC 2 cut(s) 58, 676
BbvI GCAGC 1 cut(s) 384
BccI CCATC 3 cut(s) 518, 599, 680
BceAI ACGGC 1 cut(s) 385
BcoDI GTCTC 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 3 cut(s) 320, 588, 618
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 2 cut(s) 373, 584
BlsI GCNGC 2 cut(s) 374, 585
BmcAI AGTACT 2 cut(s) 184, 616
BpuEI CTTGAG 2 cut(s) 367, 517
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 634
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 384
BshFI GGCC 3 cut(s) 37, 295, 633
BsiHKAI GWGCWC 2 cut(s) 58, 676
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 3 cut(s) 37, 295, 633
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 58, 676
Bsp143I GATC 3 cut(s) 73, 108, 572
BspACI CCGC 1 cut(s) 584
BspANI GGCC 3 cut(s) 37, 295, 633
BspCNI CTCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 437
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 3 cut(s) 73, 108, 572
BssT1I CCWWGG 1 cut(s) 634
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 675
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 3 cut(s) 76, 111, 575
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 73, 108, 572
BstMWI GCNNNNNNNGC 3 cut(s) 43, 200, 378
BstNSI RCATGY 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 384
BsuRI GGCC 3 cut(s) 37, 295, 633
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 1 cut(s) 353
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 183, 615
CviAII CATG 2 cut(s) 47, 355
CviJI RGCY 9 cut(s) 37, 146, 295, 332, 381, 531, 558, 633, 674
CviKI_1 RGCY 9 cut(s) 37, 146, 295, 332, 381, 531, 558, 633, 674
CviQI GTAC 2 cut(s) 183, 615
DdeI CTNAG 1 cut(s) 675
DpnI GATC 3 cut(s) 75, 110, 574
DpnII GATC 3 cut(s) 73, 108, 572
EaeI YGGCCR 2 cut(s) 293, 631
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 676
Eco31I GGTCTC 1 cut(s) 437
Eco47III AGCGCT 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 111, 325
EcoICRI GAGCTC 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 2 cut(s) 50, 358
FaiI YATR 8 cut(s) 48, 66, 158, 191, 308, 356, 390, 724
FaqI GGGAC 1 cut(s) 297
FatI CATG 2 cut(s) 46, 354
Fnu4HI GCNGC 2 cut(s) 373, 584
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 2 cut(s) 373, 584
FspBI CTAG 3 cut(s) 320, 588, 618
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 373, 584
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 3 cut(s) 37, 295, 633
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 50, 358
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 172, 557, 620
Hpy188I TCNGA 4 cut(s) 53, 336, 470, 678
Hpy188III TCNNGA 3 cut(s) 251, 284, 570
HpyAV CCTTC 8 cut(s) 7, 34, 116, 349, 497, 536, 573, 662
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 200, 378
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 2 cut(s) 50, 358
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 73, 108, 572
LmnI GCTCC 3 cut(s) 43, 671, 690
LpnPI CCDG 6 cut(s) 102, 236, 252, 309, 328, 406
Lsp1109I GCAGC 1 cut(s) 384
MaeI CTAG 3 cut(s) 320, 588, 618
MaeII ACGT 1 cut(s) 403
MalI GATC 3 cut(s) 75, 110, 574
MboI GATC 3 cut(s) 73, 108, 572
MboII GAAGA 6 cut(s) 16, 104, 118, 299, 335, 558
MhlI GDGCHC 2 cut(s) 58, 676
MlsI TGGCCA 2 cut(s) 295, 633
MluCI AATT 1 cut(s) 279
MluNI TGGCCA 2 cut(s) 295, 633
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 3 cut(s) 27, 231, 250
Mox20I TGGCCA 2 cut(s) 295, 633
MscI TGGCCA 2 cut(s) 295, 633
MseI TTAA 2 cut(s) 9, 681
Msp20I TGGCCA 2 cut(s) 295, 633
MspI CCGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 43, 200, 378
NdeII GATC 3 cut(s) 73, 108, 572
NlaIII CATG 2 cut(s) 50, 358
NspI RCATGY 1 cut(s) 50
PkrI GCNGC 2 cut(s) 374, 585
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 676
RsaI GTAC 2 cut(s) 184, 616
RsaNI GTAC 2 cut(s) 183, 615
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 2 cut(s) 9, 681
SatI GCNGC 2 cut(s) 373, 584
Sau3AI GATC 3 cut(s) 73, 108, 572
ScaI AGTACT 2 cut(s) 184, 616
SduI GDGCHC 2 cut(s) 58, 676
SetI ASST 9 cut(s) 334, 341, 383, 406, 489, 547, 554, 565, 676
SmlI CTYRAG 2 cut(s) 382, 532
SmoI CTYRAG 2 cut(s) 382, 532
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 584
SspMI CTAG 3 cut(s) 320, 588, 618
SstI GAGCTC 1 cut(s) 676
StyI CCWWGG 1 cut(s) 634
TaiI ACGT 1 cut(s) 406
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 279
TatI WGTACW 2 cut(s) 182, 614
TauI GCSGC 1 cut(s) 586
Tru1I TTAA 2 cut(s) 9, 681
Tru9I TTAA 2 cut(s) 9, 681
TscAI CASTG 1 cut(s) 353
TseI GCWGC 1 cut(s) 372
TspDTI ATGAA 3 cut(s) 17, 342, 371
TspRI CASTG 1 cut(s) 353
VspI ATTAAT 1 cut(s) 681
XceI RCATGY 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 3 cut(s) 320, 588, 618
ZrmI AGTACT 2 cut(s) 184, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.