Rorug01G0216400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000766
Physical Location & Seq
Reverse (-)
30910860 .. 30911162
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216400.1

Sequence Viewer

Length: 303 bp
ATGGTCACCGCCTTCGAGATCCTCCGCACCGCCCACAAGAATGCCGCCCCAAATTCTCCCAACTGGTACAAGATCCTCCAGGTAGAGCCATTTGCCCACATCAACACCATTAAGACCAAATACAAGAAGCTCGCTTTTCTTCTCCACCCTGATAAGAACCCCCATTTGGGCTCCGACGAGGCCTTCAAGCTTGTAGGGGAGGCCTTTCGGTTCCTTTCGGATAGGATTAGGATCAGGAAGGAGTATGATATGAAGCTTAGGATTGGAGAATGGATGGTGGCCGGAAGTGGTGGTCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

100

Amino Acids

11.55

Weight (kDa)

9.93

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 21 - 83 2.7e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 25, 30, 45
AclWI GGATC 3 cut(s) 13, 67, 239
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 166, 167
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 130, 190, 256
AluI AGCT 3 cut(s) 130, 190, 256
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 13, 67, 239
AoxI GGCC 3 cut(s) 180, 201, 279
ApoI RAATTY 1 cut(s) 52
BanII GRGCYC 1 cut(s) 173
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 299
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 172, 212
BmrFI CCNGG 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 167
Bse1I ACTGG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 166, 167
BseNI ACTGG 1 cut(s) 68
BshFI GGCC 3 cut(s) 182, 203, 281
BsiSI CCGG 2 cut(s) 282, 298
BslI CCNNNNNNNGG 2 cut(s) 166, 167
BsmAI GTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 3 cut(s) 182, 203, 281
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 3 cut(s) 18, 72, 231
BspACI CCGC 4 cut(s) 9, 25, 30, 45
BspANI GGCC 3 cut(s) 182, 203, 281
BspLI GGNNCC 2 cut(s) 172, 212
BspPI GGATC 3 cut(s) 13, 67, 239
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 68
BssMI GATC 3 cut(s) 18, 72, 231
Bst2UI CCWGG 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 257
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 3 cut(s) 21, 75, 234
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 3 cut(s) 18, 72, 231
BstNI CCWGG 1 cut(s) 80
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 78
BstX2I RGATCY 2 cut(s) 18, 72
BstYI RGATCY 2 cut(s) 18, 72
BsuRI GGCC 3 cut(s) 182, 203, 281
BtsCI GGATG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 8 cut(s) 88, 130, 171, 182, 190, 203, 256, 281
CviKI_1 RGCY 8 cut(s) 88, 130, 171, 182, 190, 203, 256, 281
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 257
DpnI GATC 3 cut(s) 20, 74, 233
DpnII GATC 3 cut(s) 18, 72, 231
EaeI YGGCCR 1 cut(s) 279
Eco147I AGGCCT 2 cut(s) 182, 203
Eco24I GRGCYC 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 173
FaiI YATR 2 cut(s) 246, 251
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 3 cut(s) 182, 203, 281
HapII CCGG 2 cut(s) 282, 298
HindIII AAGCTT 2 cut(s) 188, 254
HpaII CCGG 2 cut(s) 282, 298
Hpy188I TCNGA 2 cut(s) 175, 220
Hpy188III TCNNGA 2 cut(s) 16, 235
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 22, 193, 232
HpyF3I CTNAG 1 cut(s) 257
Kzo9I GATC 3 cut(s) 18, 72, 231
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 6 cut(s) 49, 65, 92, 162, 220, 295
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 20, 74, 233
MboI GATC 3 cut(s) 18, 72, 231
MboII GAAGA 1 cut(s) 131
MflI RGATCY 2 cut(s) 18, 72
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 32, 86, 172, 193
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 2 cut(s) 282, 298
MspR9I CCNGG 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 80
NdeII GATC 3 cut(s) 18, 72, 231
NlaIV GGNNCC 2 cut(s) 172, 212
NmuCI GTSAC 1 cut(s) 4
PceI AGGCCT 2 cut(s) 182, 203
PctI GAATGC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 78
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 172, 212
PsuI RGATCY 2 cut(s) 18, 72
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 18, 72, 231
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 84, 132, 192, 258
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 1 cut(s) 52
SseBI AGGCCT 2 cut(s) 182, 203
SsiI CCGC 4 cut(s) 9, 25, 30, 45
StuI AGGCCT 2 cut(s) 182, 203
StyD4I CCNGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 52
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 266
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.