Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

22747952 .. 22749124

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGCTCATAAGTAAGCGAGATTTCGAGGGCAAGGATTTTGGTCCCAACTTGTCAAGTTTGGAGATGTTAGCAATGGTTACTGCTGTTGCTGCCAAGAAATTGAATCGAGAAAAGCAACAGAGGATGATGGGTACCTTCAACTCCAAGAAAGAAGAAAGTGAGGCATACCAATCAGTGTCGACTAAGCAAGAATTTCGGGTGGCAGAGAAGAGTGCTTTAAATAAGCCTCTGGTAATATCCTCGAAGAAAGGGAAGCCTACGGTAATAGAGCCTGAAAATACCCTAGGAAGTTATAGTGGGTACCTTCAACTCCAAATGGGCACCTTAAACTCCAAGAAAGAACCAGATTATGTTGTAGAGAAAGAATCTGGTTCATTCATTCCGAATAAGCCAAGGGGATGGCAACCCAAGAAAGAAAACGGTGTAAGAGAACAAAAAGTTATGAGCTTAAAAAAGAATGGTTTGAAAAGAAAATTCCAAGATGAGCATGATTGGGAGAACAAGAAATTAGTACCCAATAGTACCGGCGACTTGCCTGAAGAGTTCAAGAACGAGATTGAAACTTCCGGAAGGATTAAGGTGGAGTTGATGATTGAGAACAAATTGTTCAAGTCTGATGGTGTTGATAATGCTGCCCATGATCATGATTGGGATTTGGATTATGCATTTAAGAACAATTACAAGAAGCACAAGGGCTTGATGAAAAGGAAGAAGAAAAAATTCGTACCAAATAGTAGTACTCCTACTCATGACTTGCCTGAAGTGTTCAGGAAGAAGATTGAAACTTTGGGAGGGACTAAGGTCAACTTGGTGATTGAGAAGACATTGTACAAGTCTGACTTAGTACAGGGCGAAAACCGGTTGTCAATGCCTTTCAAACAAATCCGCTCCAAATTCTTGGAAGATGATGAAGTTAGAAGGCTTGCGAACTATGAAACCTTGACGGTCCCATTGATAGACACCATGCTACAAGAAAGAGAGATATGCTTGAGTCGGTGGAGCTTGCACACAAGCAAATGGTATGTGCTGAAAACTCAATGGTACAAGAAAATTGTTTTGAATAACGGACTTAGAAAAGGTGACTTGATCCAAGTTTGGTCATTCCGAGATAAGGTGAACAACCTTCACTTGGCACTAGTTTTGGTTGAGAGAAAAGGCGAGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

391

Amino Acids

45.2

Weight (kDa)

9.5

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	257 - 350	9e-13	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	134, 303
AccB1I	GGYRCC	3 cut(s)	134, 303, 323
AccBSI	CCGCTC	1 cut(s)	891
AccI	GTMKAC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	1 cut(s)	1084
AcsI	RAATTY	4 cut(s)	194, 476, 722, 896
AcuI	CTGAAG	2 cut(s)	561, 783
AfaI	GTAC	9 cut(s)	136, 305, 516, 526, 729, 742, 833, 849, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	1114, 1132
AgeI	ACCGGT	1 cut(s)	861
AhlI	ACTAGT	1 cut(s)	1138
AluBI	AGCT	3 cut(s)	7, 450, 1005
AluI	AGCT	3 cut(s)	7, 450, 1005
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	1084
Aor13HI	TCCGGA	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	92, 635
ApoI	RAATTY	4 cut(s)	194, 476, 722, 896
AsiGI	ACCGGT	1 cut(s)	861
Asp700I	GAANNNNTTC	1 cut(s)	722
Asp718I	GGTACC	2 cut(s)	134, 303
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	44, 949
AsuHPI	GGTGA	3 cut(s)	826, 1094, 1129
AvaII	GGWCC	2 cut(s)	44, 949
AvrII	CCTAGG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	3 cut(s)	134, 303, 323
BanII	GRGCYC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	815, 847
BbsI	GAAGAC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	79, 622
BccI	CCATC	3 cut(s)	124, 396, 614
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BclI	TGATCA	1 cut(s)	643
BcuI	ACTAGT	1 cut(s)	1138
BfaI	CTAG	2 cut(s)	287, 1139
BisI	GCNGC	2 cut(s)	93, 636
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	2 cut(s)	94, 637
BmcAI	AGTACT	1 cut(s)	742
Bme18I	GGWCC	2 cut(s)	44, 949
BmgT120I	GGNCC	2 cut(s)	44, 949
BmiI	GGNNCC	5 cut(s)	46, 136, 305, 325, 951
BoxI	GACNNNNGTC	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	1012
BsaJI	CCNNGG	2 cut(s)	286, 395
BsaWI	WCCGGW	2 cut(s)	569, 861
Bsc4I	CCNNNNNNNGG	2 cut(s)	1114, 1132
Bse118I	RCCGGY	2 cut(s)	527, 861
Bse3DI	GCAATG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	286, 395
BseGI	GGATG	2 cut(s)	132, 407
BseLI	CCNNNNNNNGG	2 cut(s)	1114, 1132
BseMI	GCAATG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	79, 622
BshNI	GGYRCC	3 cut(s)	134, 303, 323
BshTI	ACCGGT	1 cut(s)	861
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	528, 570, 862
BslFI	GGGAC	3 cut(s)	30, 811, 935
BslI	CCNNNNNNNGG	2 cut(s)	1114, 1132
BsmFI	GGGAC	3 cut(s)	30, 811, 935
Bsp1286I	GDGCHC	2 cut(s)	9, 326
Bsp13I	TCCGGA	1 cut(s)	569
Bsp1407I	TGTACA	1 cut(s)	831
Bsp143I	GATC	2 cut(s)	643, 1089
BspACI	CCGC	1 cut(s)	889
BspEI	TCCGGA	1 cut(s)	569
BspHI	TCATGA	2 cut(s)	646, 751
BspLI	GGNNCC	5 cut(s)	46, 136, 305, 325, 951
BspPI	GGATC	1 cut(s)	1084
BspT107I	GGYRCC	3 cut(s)	134, 303, 323
BsrBI	CCGCTC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	527, 861
BsrGI	TGTACA	1 cut(s)	831
BssAI	RCCGGY	2 cut(s)	527, 861
BssECI	CCNNGG	2 cut(s)	286, 395
BssMI	GATC	2 cut(s)	643, 1089
BssT1I	CCWWGG	2 cut(s)	286, 395
Bst4CI	ACNGT	3 cut(s)	265, 425, 949
Bst6I	CTCTTC	2 cut(s)	206, 537
BstAUI	TGTACA	1 cut(s)	831
BstC8I	GCNNGC	2 cut(s)	927, 1007
BstDEI	CTNAG	4 cut(s)	186, 801, 844, 1073
BstF5I	GGATG	2 cut(s)	132, 407
BstKTI	GATC	2 cut(s)	646, 1092
BstMBI	GATC	2 cut(s)	643, 1089
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	803
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	79, 622
BstV2I	GAAGAC	1 cut(s)	830
BstXI	CCANNNNNNTGG	2 cut(s)	402, 901
BtsCI	GGATG	2 cut(s)	132, 407
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	927, 1007
CciI	TCATGA	2 cut(s)	646, 751
Cfr10I	RCCGGY	2 cut(s)	527, 861
Cfr13I	GGNCC	2 cut(s)	44, 949
Csp6I	GTAC	9 cut(s)	135, 304, 515, 525, 728, 741, 832, 848, 1045
CspAI	ACCGGT	1 cut(s)	861
CviAII	CATG	5 cut(s)	491, 641, 647, 752, 967
CviJI	RGCY	9 cut(s)	7, 229, 259, 274, 394, 450, 699, 925, 1005
CviKI_1	RGCY	9 cut(s)	7, 229, 259, 274, 394, 450, 699, 925, 1005
CviQI	GTAC	9 cut(s)	135, 304, 515, 525, 728, 741, 832, 848, 1045
DdeI	CTNAG	4 cut(s)	186, 801, 844, 1073
DpnI	GATC	2 cut(s)	645, 1091
DpnII	GATC	2 cut(s)	643, 1089
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	206, 537
EarI	CTCTTC	2 cut(s)	206, 537
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	286, 395
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	44, 949
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	561, 783
EcoICRI	GAGCTC	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	286, 395
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	286, 395
FaeI	CATG	5 cut(s)	494, 644, 650, 755, 970
FalI	AAGNNNNNCTT	4 cut(s)	794, 826, 827, 859
FaqI	GGGAC	3 cut(s)	30, 811, 935
FatI	CATG	5 cut(s)	490, 640, 646, 751, 966
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	93, 636
FokI	GGATG	2 cut(s)	139, 414
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	93, 636
FspBI	CTAG	2 cut(s)	287, 1139
GluI	GCNGC	2 cut(s)	93, 636
HapII	CCGG	3 cut(s)	528, 570, 862
Hin1II	CATG	5 cut(s)	494, 644, 650, 755, 970
HincII	GTYRAC	2 cut(s)	183, 808
HindII	GTYRAC	2 cut(s)	183, 808
HinfI	GANTC	3 cut(s)	106, 368, 994
HpaII	CCGG	3 cut(s)	528, 570, 862
HphI	GGTGA	3 cut(s)	826, 1094, 1129
Hpy166II	GTNNAC	3 cut(s)	183, 808, 1120
Hpy188I	TCNGA	4 cut(s)	387, 619, 841, 1109
Hpy188III	TCNNGA	6 cut(s)	110, 550, 570, 647, 752, 772
Hpy8I	GTNNAC	3 cut(s)	183, 808, 1120
HpyAV	CCTTC	5 cut(s)	148, 317, 567, 915, 1136
HpyCH4III	ACNGT	3 cut(s)	265, 425, 949
HpyCH4V	TGCA	2 cut(s)	668, 1009
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	4 cut(s)	186, 801, 844, 1073
Hsp92II	CATG	5 cut(s)	494, 644, 650, 755, 970
Kpn2I	TCCGGA	1 cut(s)	569
KpnI	GGTACC	2 cut(s)	138, 307
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	643, 1089
LmnI	GCTCC	3 cut(s)	4, 896, 1002
Lsp1109I	GCAGC	2 cut(s)	79, 622
MaeI	CTAG	2 cut(s)	287, 1139
MaeIII	GTNAC	2 cut(s)	79, 1082
MalI	GATC	2 cut(s)	645, 1091
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	2 cut(s)	643, 1089
MhlI	GDGCHC	2 cut(s)	9, 326
MluCI	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 896, 1053
MlyI	GAGTC	1 cut(s)	1003
MnlI	CCTC	7 cut(s)	22, 117, 157, 240, 253, 788, 1156
Mph1103I	ATGCAT	1 cut(s)	670
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	5 cut(s)	221, 329, 452, 579, 672
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	3 cut(s)	528, 570, 862
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	643, 1089
NlaIII	CATG	5 cut(s)	494, 644, 650, 755, 970
NlaIV	GGNNCC	5 cut(s)	46, 136, 305, 325, 951
NmuCI	GTSAC	1 cut(s)	1082
NsiI	ATGCAT	1 cut(s)	670
PagI	TCATGA	2 cut(s)	646, 751
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	106, 368
PinAI	ACCGGT	1 cut(s)	861
PkrI	GCNGC	2 cut(s)	94, 637
PleI	GAGTC	1 cut(s)	1002
PpsI	GAGTC	1 cut(s)	1002
PshAI	GACNNNNGTC	1 cut(s)	803
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	5 cut(s)	46, 136, 305, 325, 951
PspPI	GGNCC	2 cut(s)	44, 949
RsaI	GTAC	9 cut(s)	136, 305, 516, 526, 729, 742, 833, 849, 1046
RsaNI	GTAC	9 cut(s)	135, 304, 515, 525, 728, 741, 832, 848, 1045
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	5 cut(s)	221, 329, 452, 579, 672
SatI	GCNGC	2 cut(s)	93, 636
Sau3AI	GATC	2 cut(s)	643, 1089
Sau96I	GGNCC	2 cut(s)	44, 949
ScaI	AGTACT	1 cut(s)	742
SchI	GAGTC	1 cut(s)	1003
SduI	GDGCHC	2 cut(s)	9, 326
SinI	GGWCC	2 cut(s)	44, 949
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
SpeI	ACTAGT	1 cut(s)	1138
Sse9I	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 896, 1053
SsiI	CCGC	1 cut(s)	889
SspMI	CTAG	2 cut(s)	287, 1139
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	286, 395
TaaI	ACNGT	3 cut(s)	265, 425, 949
TaqI	TCGA	4 cut(s)	27, 109, 182, 245
TasI	AATT	9 cut(s)	101, 194, 476, 509, 605, 679, 722, 896, 1053
TatI	WGTACW	3 cut(s)	740, 831, 847
TfiI	GAWTC	2 cut(s)	106, 368
Tru1I	TTAA	5 cut(s)	221, 329, 452, 579, 672
Tru9I	TTAA	5 cut(s)	221, 329, 452, 579, 672
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	2 cut(s)	92, 635
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	5 cut(s)	366, 370, 719, 927, 951
TspGWI	ACGGA	1 cut(s)	1083
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	44, 949
XapI	RAATTY	4 cut(s)	194, 476, 722, 896
XmaJI	CCTAGG	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	2 cut(s)	287, 1139
ZrmI	AGTACT	1 cut(s)	742
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.