AT5G38490

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000766
Physical Location & Seq
Reverse (-)
15411672 .. 15413132
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38490.1

Sequence Viewer

Length: 1095 bp
ATGAGTAGTATTATGTATCACGATAATCATCTCACGGATTCGGGGAAGAATATGTCGTCGGGTTTAAGTTTACTGGCGTATGTGACGGTTATGGTTGCGGAGGAAGAAGAACAACGTAGTCGTCTTCTTGCAGAGAAACGAGAAGAATCCAAGTGCAAGATGAGTTTCTTCTATCTTTTCCCGAGGAAAATCAAATCGTCTTTGGCGAAGAGAAGATACACACAACAAAACCCTAATGGGGCTTCTACTTGTTCGTCATCGCTTCCCGATCTTAACCTAATCCCTACTGATTTTGAGACAGACAACCTACAAAACCCTTGTTTTGATGAACCTATGGTGTGTGATGAAGAACAACGTTTAAAGAAAGGTAAATCCAAGATTGTCTACGATGAAGATTATGATGACGAGAGTGAAAAGAAACTCTTTGATAATCTTAATGGAGCTTCTACTTCTTCTTCATCGCTCCTGAACCTTCCTTGTCTTGAACCTTCGACAGAGACAAAAGACGTACCAAACCCTAATTACCAATCTTCGTCTCCGTCTTCATGCCTAACAGGGAAGACAAACCGCAAGAGGCGTGCCGTGGAGCAGAGGAAGAGTGGTAAAGTCAAGAAAGTTAAGGTTTCTCCTTTGCCAAGGTTGTGTACAGAGATGCCTGAGTGGATTTTCCAAGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAGGCTGATATTTGAGAGGACTCTGTTTAAGAGTGATGTCAACTCAAACCTTAGTCGTCTCTTAATGCCTTTCCAGAAGCTAATCAGAAACGATTTCCTGACTCCTGCGGAGTGTAGAGCTATGCAGAAAGACGAAGACAATGATGAAGAAGACGACGAGAATATTGGTGTGGGAACGGTTCTTGTGAACCAAAGATTTCAAAAGTGGGGTTTGCGTTTCAAGATATGGGCGATGGAGAAGGACTCTGGACATGGAACATTGAATTACACTTTGAATTGGGGTTGGAATGATGTCGTCAAAAGTAGCAGCTTAAAAGTCGGCGACAAGATCAGCCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTGCACTTGACACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

364

Amino Acids

41.73

Weight (kDa)

6.41

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 216 - 336 1.5e-41 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1056
AccI GTMKAC 1 cut(s) 384
AciI CCGC 3 cut(s) 98, 568, 815
AclI AACGTT 1 cut(s) 355
AfaI GTAC 2 cut(s) 510, 646
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 485, 908, 928, 970, 982
AluBI AGCT 4 cut(s) 443, 787, 827, 1017
AluI AGCT 4 cut(s) 443, 787, 827, 1017
Alw26I GTCTC 4 cut(s) 290, 491, 540, 770
Ama87I CYCGRG 2 cut(s) 181, 706
ApeKI GCWGC 1 cut(s) 1014
AvaI CYCGRG 2 cut(s) 181, 706
BanI GGYRCC 1 cut(s) 1056
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbsI GAAGAC 5 cut(s) 116, 534, 566, 849, 864
BbvI GCAGC 1 cut(s) 1026
BccI CCATC 1 cut(s) 934
BceAI ACGGC 2 cut(s) 566, 1044
BcoDI GTCTC 4 cut(s) 290, 491, 540, 770
BisI GCNGC 1 cut(s) 1015
BlsI GCNGC 1 cut(s) 1016
BmeT110I CYCGRG 2 cut(s) 181, 706
BmiI GGNNCC 1 cut(s) 1058
BmsI GCATC 2 cut(s) 642, 685
BpiI GAAGAC 5 cut(s) 116, 534, 566, 849, 864
BplI GAGNNNNNCTC 2 cut(s) 935, 967
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 5 cut(s) 182, 582, 635, 707, 1060
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 5 cut(s) 182, 582, 635, 707, 1060
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 1026
BshNI GGYRCC 1 cut(s) 1056
BsiHKCI CYCGRG 2 cut(s) 181, 706
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 290, 491, 540, 770
BsmBI CGTCTC 2 cut(s) 540, 770
BsoBI CYCGRG 2 cut(s) 181, 706
Bsp1407I TGTACA 1 cut(s) 644
Bsp143I GATC 2 cut(s) 268, 1035
BspACI CCGC 3 cut(s) 98, 568, 815
BspCNI CTCAG 1 cut(s) 649
BspLI GGNNCC 1 cut(s) 1058
BspT107I GGYRCC 1 cut(s) 1056
BsrGI TGTACA 1 cut(s) 644
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 5 cut(s) 182, 582, 635, 707, 1060
BssMI GATC 2 cut(s) 268, 1035
BssT1I CCWWGG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 88, 886
Bst6I CTCTTC 2 cut(s) 203, 590
BstAUI TGTACA 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 2 cut(s) 657, 758
BstDSI CCRYGG 2 cut(s) 582, 1060
BstKTI GATC 2 cut(s) 271, 1038
BstMAI GTCTC 4 cut(s) 290, 491, 540, 770
BstMBI GATC 2 cut(s) 268, 1035
BstV1I GCAGC 1 cut(s) 1026
BstV2I GAAGAC 5 cut(s) 116, 534, 566, 849, 864
BtgI CCRYGG 2 cut(s) 582, 1060
BtgZI GCGATG 3 cut(s) 243, 444, 953
Cac8I GCNNGC 1 cut(s) 579
Csp6I GTAC 2 cut(s) 509, 645
CviAII CATG 3 cut(s) 546, 685, 959
CviJI RGCY 7 cut(s) 242, 443, 712, 787, 827, 1017, 1041
CviKI_1 RGCY 7 cut(s) 242, 443, 712, 787, 827, 1017, 1041
CviQI GTAC 2 cut(s) 509, 645
DdeI CTNAG 2 cut(s) 657, 758
DpnI GATC 2 cut(s) 270, 1037
DpnII GATC 2 cut(s) 268, 1035
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 203, 590
EarI CTCTTC 2 cut(s) 203, 590
Eco130I CCWWGG 1 cut(s) 635
Eco88I CYCGRG 2 cut(s) 181, 706
EcoT14I CCWWGG 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 635
Esp3I CGTCTC 2 cut(s) 540, 770
FaeI CATG 3 cut(s) 549, 688, 962
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 3 cut(s) 545, 684, 958
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 1015
Fsp4HI GCNGC 1 cut(s) 1015
GluI GCNGC 1 cut(s) 1015
Hin1II CATG 3 cut(s) 549, 688, 962
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 6 cut(s) 38, 146, 727, 808, 950, 1065
Hpy166II GTNNAC 5 cut(s) 71, 385, 645, 748, 895
Hpy188I TCNGA 1 cut(s) 794
Hpy8I GTNNAC 5 cut(s) 71, 385, 645, 748, 895
Hpy99I CGWCG 2 cut(s) 61, 866
HpyAV CCTTC 3 cut(s) 482, 498, 940
HpyCH4III ACNGT 2 cut(s) 88, 886
HpyCH4IV ACGT 3 cut(s) 115, 355, 507
HpyCH4V TGCA 4 cut(s) 131, 156, 832, 1079
HpyF3I CTNAG 2 cut(s) 657, 758
HpySE526I ACGT 3 cut(s) 115, 355, 507
Hsp92II CATG 3 cut(s) 549, 688, 962
Kzo9I GATC 2 cut(s) 268, 1035
LmnI GCTCC 3 cut(s) 440, 468, 586
LpnPI CCDG 9 cut(s) 59, 479, 540, 669, 794, 818, 825, 939, 1039
Lsp1109I GCAGC 1 cut(s) 1026
LweI GCATC 2 cut(s) 642, 685
MaeII ACGT 3 cut(s) 115, 355, 507
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 270, 1037
MboI GATC 2 cut(s) 268, 1035
MluCI AATT 3 cut(s) 520, 970, 982
MlyI GAGTC 4 cut(s) 721, 802, 944, 1074
MmeI TCCRAC 1 cut(s) 971
MnlI CCTC 7 cut(s) 94, 177, 567, 585, 702, 717, 1079
MseI TTAA 8 cut(s) 65, 273, 359, 435, 618, 735, 770, 1019
NdeII GATC 2 cut(s) 268, 1035
NlaIII CATG 3 cut(s) 549, 688, 962
NlaIV GGNNCC 1 cut(s) 1058
NmuCI GTSAC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 2 cut(s) 38, 146
PkrI GCNGC 1 cut(s) 1016
PleI GAGTC 4 cut(s) 721, 802, 944, 1073
PpsI GAGTC 4 cut(s) 721, 802, 944, 1073
Psp1406I AACGTT 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 1058
RsaI GTAC 2 cut(s) 510, 646
RsaNI GTAC 2 cut(s) 509, 645
SaqAI TTAA 8 cut(s) 65, 273, 359, 435, 618, 735, 770, 1019
SatI GCNGC 1 cut(s) 1015
Sau3AI GATC 2 cut(s) 268, 1035
SchI GAGTC 4 cut(s) 721, 802, 944, 1074
SfaNI GCATC 2 cut(s) 642, 685
Sse9I AATT 3 cut(s) 520, 970, 982
SsiI CCGC 3 cut(s) 98, 568, 815
SspI AATATT 1 cut(s) 871
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 2 cut(s) 88, 886
TaiI ACGT 3 cut(s) 118, 358, 510
TaqI TCGA 1 cut(s) 491
TasI AATT 3 cut(s) 520, 970, 982
TatI WGTACW 1 cut(s) 644
TfiI GAWTC 2 cut(s) 38, 146
Tru1I TTAA 8 cut(s) 65, 273, 359, 435, 618, 735, 770, 1019
Tru9I TTAA 8 cut(s) 65, 273, 359, 435, 618, 735, 770, 1019
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 1014
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 7 cut(s) 342, 360, 405, 447, 534, 701, 867
TspGWI ACGGA 2 cut(s) 50, 528
XmiI GTMKAC 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.