Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

66889188 .. 66890440

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG449600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGGAGGCTGCTGAGTTTGAAAGATTTTGAGGGCAAAGCAATTCGACCTCGTTCGTCCTACCTTGATATTTTTCTTCAGGTTGCTAGTGTTCTTCAGAATAAGAAACTCAAGCAAAGTACGAAGGAGAAAAGTACTCATTTGAAAACCAAGATGGCCGGTATAGGGTTTAAAGAACCCATTTTCATGGTAGGGAAAGAGACTTATGCAAAGGGACAAAAATTTATGAACTCTGTTTTTGAATCTGTGAGGAAGATTGGTGGGTCAAAAAGAAAGGGTTTTGACAATTTTGATGATCATGAAAGGGGTTCTCAATTCAAGAAGCAGAAGATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAGGTATTGATGCTAACGGCTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATGAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACTGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAGTACAGATGAGATAAAGTTTCTTGTAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCAACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAACACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCATTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATGGTGGCTCAATTAGTGATGGTGATAGGTGTAGCCTACCTTCTTCAAGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTAATAGTTGTGATATTGGCCAAGGAACAGAAACAAAGGAACAAGAGATGATAGAAGGAGCTCAGATTAATGAAGGGAGCAGTAGTGGGAATGGGAGAACTTCAACACCATATGGCAATGAGTCTCATGATCACGAAATTTCGACACCGTGTATGTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

394

Amino Acids

44.34

Weight (kDa)

9.27

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	185 - 275	2.1e-15	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	598
AciI	CCGC	1 cut(s)	992
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	3 cut(s)	156, 701, 1039
AcsI	RAATTY	4 cut(s)	221, 367, 541, 1158
AcuI	CTGAAG	3 cut(s)	62, 80, 537
AfaI	GTAC	5 cut(s)	121, 136, 346, 607, 664
AfiI	CCNNNNNNNGG	2 cut(s)	165, 883
AflIII	ACRYGT	1 cut(s)	809
AluBI	AGCT	3 cut(s)	789, 795, 1082
AluI	AGCT	3 cut(s)	789, 795, 1082
Alw21I	GWGCWC	2 cut(s)	791, 1084
Alw26I	GTCTC	3 cut(s)	194, 845, 1149
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	4 cut(s)	156, 437, 701, 1039
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	4 cut(s)	221, 367, 541, 1158
AseI	ATTAAT	1 cut(s)	1089
AsuHPI	GGTGA	4 cut(s)	422, 580, 965, 1028
BalI	TGGCCA	2 cut(s)	703, 1041
BanII	GRGCYC	2 cut(s)	791, 1084
BarI	GAAGNNNNNNTAC	2 cut(s)	955, 987
Bbv12I	GWGCWC	2 cut(s)	791, 1084
BccI	CCATC	5 cut(s)	148, 325, 926, 944, 1007
BceAI	ACGGC	1 cut(s)	523
BclI	TGATCA	2 cut(s)	295, 1150
BcoDI	GTCTC	3 cut(s)	194, 845, 1149
BfaI	CTAG	2 cut(s)	87, 996
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	2 cut(s)	11, 992
BlsI	GCNGC	2 cut(s)	12, 993
BmcAI	AGTACT	1 cut(s)	136
BmsI	GCATC	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	3 cut(s)	95, 769, 775
BsaAI	YACGTR	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	351, 1042
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	2 cut(s)	1090, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 883
Bse118I	RCCGGY	2 cut(s)	158, 615
Bse1I	ACTGG	2 cut(s)	704, 704
Bse3DI	GCAATG	1 cut(s)	1144
BseDI	CCNNGG	2 cut(s)	351, 1042
BseLI	CCNNNNNNNGG	2 cut(s)	165, 883
BseMI	GCAATG	1 cut(s)	1144
BseMII	CTCAG	3 cut(s)	5, 650, 1097
BseNI	ACTGG	2 cut(s)	704, 704
BshFI	GGCC	4 cut(s)	158, 439, 703, 1041
BsiHKAI	GWGCWC	2 cut(s)	791, 1084
BsiSI	CCGG	3 cut(s)	159, 616, 647
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	165, 883
BsmAI	GTCTC	3 cut(s)	194, 845, 1149
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	158, 439, 703, 1041
Bso31I	GGTCTC	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	791, 1084
Bsp143I	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
BspACI	CCGC	1 cut(s)	992
BspANI	GGCC	4 cut(s)	158, 439, 703, 1041
BspCNI	CTCAG	3 cut(s)	6, 651, 1096
BspHI	TCATGA	2 cut(s)	298, 1147
BspPI	GGATC	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	1144
BsrFI	RCCGGY	2 cut(s)	158, 615
BsrI	ACTGG	2 cut(s)	704, 704
BssAI	RCCGGY	2 cut(s)	158, 615
BssECI	CCNNGG	2 cut(s)	351, 1042
BssMI	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
BssT1I	CCWWGG	1 cut(s)	1042
Bst4CI	ACNGT	1 cut(s)	1170
Bst6I	CTCTTC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	512, 613
BstDEI	CTNAG	4 cut(s)	14, 555, 659, 1083
BstKTI	GATC	6 cut(s)	298, 483, 721, 742, 983, 1153
BstMAI	GTCTC	3 cut(s)	194, 845, 1149
BstMBI	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
BstX2I	RGATCY	2 cut(s)	718, 739
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	2 cut(s)	718, 739
BsuRI	GGCC	4 cut(s)	158, 439, 703, 1041
BtsI	GCAGTG	1 cut(s)	761
BtsIMutI	CAGTG	1 cut(s)	761
Cac8I	GCNNGC	2 cut(s)	512, 613
CciI	TCATGA	2 cut(s)	298, 1147
Cfr10I	RCCGGY	2 cut(s)	158, 615
Csp6I	GTAC	5 cut(s)	120, 135, 345, 606, 663
CviAII	CATG	4 cut(s)	187, 299, 763, 1148
CviQI	GTAC	5 cut(s)	120, 135, 345, 606, 663
DdeI	CTNAG	4 cut(s)	14, 555, 659, 1083
DpnI	GATC	6 cut(s)	297, 482, 720, 741, 982, 1152
DpnII	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
DraI	TTTAAA	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	598
DseDI	GACNNNNNNGTC	1 cut(s)	598
EaeI	YGGCCR	3 cut(s)	156, 701, 1039
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Ecl136II	GAGCTC	2 cut(s)	789, 1082
Eco130I	CCWWGG	1 cut(s)	1042
Eco24I	GRGCYC	2 cut(s)	791, 1084
Eco31I	GGTCTC	1 cut(s)	845
Eco53kI	GAGCTC	2 cut(s)	789, 1082
Eco57I	CTGAAG	3 cut(s)	62, 80, 537
EcoICRI	GAGCTC	2 cut(s)	789, 1082
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT38I	GRGCYC	2 cut(s)	791, 1084
ErhI	CCWWGG	1 cut(s)	1042
FaeI	CATG	4 cut(s)	190, 302, 766, 1151
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	4 cut(s)	186, 298, 762, 1147
FauNDI	CATATG	1 cut(s)	1132
FbaI	TGATCA	2 cut(s)	295, 1150
Fnu4HI	GCNGC	2 cut(s)	11, 992
FriOI	GRGCYC	2 cut(s)	791, 1084
Fsp4HI	GCNGC	2 cut(s)	11, 992
FspBI	CTAG	2 cut(s)	87, 996
GluI	GCNGC	2 cut(s)	11, 992
HaeIII	GGCC	4 cut(s)	158, 439, 703, 1041
HapII	CCGG	3 cut(s)	159, 616, 647
Hin1II	CATG	4 cut(s)	190, 302, 766, 1151
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HinfI	GANTC	2 cut(s)	242, 1142
HpaII	CCGG	3 cut(s)	159, 616, 647
HphI	GGTGA	4 cut(s)	422, 580, 965, 1028
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	5 cut(s)	99, 352, 660, 878, 1086
Hpy188III	TCNNGA	5 cut(s)	299, 319, 978, 1148, 1154
Hpy8I	GTNNAC	1 cut(s)	585
HpyAV	CCTTC	7 cut(s)	118, 469, 571, 905, 981, 1070, 1088
HpyCH4III	ACNGT	1 cut(s)	1170
HpyCH4IV	ACGT	2 cut(s)	604, 811
HpyCH4V	TGCA	1 cut(s)	209
HpyF3I	CTNAG	4 cut(s)	14, 555, 659, 1083
HpySE526I	ACGT	2 cut(s)	604, 811
Hsp92II	CATG	4 cut(s)	190, 302, 766, 1151
Ksp22I	TGATCA	2 cut(s)	295, 1150
Kzo9I	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
LmnI	GCTCC	2 cut(s)	1079, 1098
LpnPI	CCDG	8 cut(s)	65, 172, 528, 629, 660, 685, 717, 814
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	87, 996
MaeII	ACGT	2 cut(s)	604, 811
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	6 cut(s)	297, 482, 720, 741, 982, 1152
MboI	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
MflI	RGATCY	2 cut(s)	718, 739
MhlI	GDGCHC	2 cut(s)	791, 1084
MlsI	TGGCCA	2 cut(s)	703, 1041
MluNI	TGGCCA	2 cut(s)	703, 1041
MlyI	GAGTC	1 cut(s)	1151
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	9 cut(s)	25, 60, 243, 346, 358, 429, 456, 544, 744
Mox20I	TGGCCA	2 cut(s)	703, 1041
MscI	TGGCCA	2 cut(s)	703, 1041
MseI	TTAA	2 cut(s)	171, 1089
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	2 cut(s)	703, 1041
MspI	CCGG	3 cut(s)	159, 616, 647
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
NlaIII	CATG	4 cut(s)	190, 302, 766, 1151
NmuCI	GTSAC	1 cut(s)	600
PagI	TCATGA	2 cut(s)	298, 1147
PcsI	WCGNNNNNNNCGW	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	12, 993
PleI	GAGTC	1 cut(s)	1150
PpsI	GAGTC	1 cut(s)	1150
Ppu21I	YACGTR	1 cut(s)	605
PshBI	ATTAAT	1 cut(s)	1089
Psp124BI	GAGCTC	2 cut(s)	791, 1084
PsuI	RGATCY	2 cut(s)	718, 739
RsaI	GTAC	5 cut(s)	121, 136, 346, 607, 664
RsaNI	GTAC	5 cut(s)	120, 135, 345, 606, 663
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	2 cut(s)	791, 1084
SaqAI	TTAA	2 cut(s)	171, 1089
SatI	GCNGC	2 cut(s)	11, 992
Sau3AI	GATC	6 cut(s)	295, 480, 718, 739, 980, 1150
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	1 cut(s)	1151
SduI	GDGCHC	2 cut(s)	791, 1084
SfaNI	GCATC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	110, 748, 790
SmoI	CTYRAG	3 cut(s)	110, 748, 790
SsiI	CCGC	1 cut(s)	992
SspMI	CTAG	2 cut(s)	87, 996
SstI	GAGCTC	2 cut(s)	791, 1084
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	1 cut(s)	1170
TaiI	ACGT	2 cut(s)	607, 814
TaqI	TCGA	2 cut(s)	46, 1163
TatI	WGTACW	2 cut(s)	134, 662
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	171, 1089
Tru9I	TTAA	2 cut(s)	171, 1089
TscAI	CASTG	1 cut(s)	761
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	6 cut(s)	175, 242, 315, 647, 887, 1107
TspRI	CASTG	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	4 cut(s)	221, 367, 541, 1158
XspI	CTAG	2 cut(s)	87, 996
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.