Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

31745295 .. 31746673

Gene Structure 1379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG200700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTAGCAATGGTTACTGCTGTTGCTGCAAAGAAATTGAATCGAGAAAAGCAACAGAGGATGATGGGTACCTTCAACTCTAAGAAAGAAGAAACTGAGGCATACCAATCAGTGTCGACTAAGCAAGAATTTCGGGTGGCAGAGAAGAGTGCTTTAAATAAGCCTCTGGTAATAACCTCGAAGAAAGAGAAGCCTACGGTAATAGAGCCTGAAAATACCCTAGGAAGTTATAGTGGGTACCTTCAACTCCAAATGGGTACCTTAAACTCCAAGAAAGAACCAGATTATGTTGTAGAGAAAGAATCTGGTTCATTCATTCCGAATAAGCCAAGGGGATGGCAGCCCAAGAAAGAAAACGGTGTTAGAGAACAAAAAGTTATGAGCTTCAAAAAGAATGGTTTGAAAAGAAAATTCCAAGATGAGCATGATTGGGAGAACAAGAAATTAGTACCCAATAGTACCGGCGACTTGCCTGAAGAGTTCAAGAACGAGATTGAAACTTCCGGAAGGATTAAGGTGGAGTTGATGATTGAGAACAAATTGTTCAAGTCTGATGGTGTTGATAATGCTGCTCATGGTCATGATTGGGATTTGGATTATGCATTTAAGAACAATTACAAGAAGCACAAGGGCTTGATGAAAAGGCAGAAGAAAAAATTCGTACCAAATAGAAGTAGTACTCCTACTCATGACTTGCCTGAAGTGTTCAGGAAGAAGATTGAAACTTTGGGAGGGACTAAGGTGAACTTGGTGATTGAGAAGACATTGTACAAGTCTGACTTAGTACAGCGCGAAAACCGGTTGTCAATGCCTTTCAAACAAATCCGCTCGAAATTCTTGGAAGATGATGAAGTTAGAAGGCTTGCGAACTATGAAACCTTGACGGTCCCATTGATAGACACCATGCTACAAGAAAGAGAGATATGCTTGAGTCGGTGGAGCTTGCACACAAGCAAATGGTATGTGCTGAAAACTCAATGGTACAAGAAAATTGTTTTGAACAACGGACTTAGAAAAGGTGACTTGATCCAAGTTTGGTCATTCCGAGATAAGGTGAACAACCTTCACTTGGCACTTGTTTTGGTTGAGAGAAAAGGCGAGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

369

Amino Acids

43.04

Weight (kDa)

9.64

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	236 - 329	3.3e-13	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	68, 237, 257
AccB1I	GGYRCC	3 cut(s)	68, 237, 257
AccBSI	CCGCTC	1 cut(s)	828
AccI	GTMKAC	1 cut(s)	116
AccII	CGCG	1 cut(s)	792
AccIII	TCCGGA	1 cut(s)	503
AciI	CCGC	1 cut(s)	826
AclWI	GGATC	1 cut(s)	1021
AcsI	RAATTY	4 cut(s)	128, 410, 656, 833
AcuI	CTGAAG	2 cut(s)	495, 720
AfiI	CCNNNNNNNGG	2 cut(s)	1051, 1069
AgeI	ACCGGT	1 cut(s)	798
AluBI	AGCT	2 cut(s)	384, 942
AluI	AGCT	2 cut(s)	384, 942
AlwI	GGATC	1 cut(s)	1021
Aor13HI	TCCGGA	1 cut(s)	503
ApeKI	GCWGC	3 cut(s)	26, 340, 569
ApoI	RAATTY	4 cut(s)	128, 410, 656, 833
AsiGI	ACCGGT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	656
Asp718I	GGTACC	3 cut(s)	68, 237, 257
AspA2I	CCTAGG	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	886
AsuHPI	GGTGA	4 cut(s)	754, 763, 1031, 1066
AvaII	GGWCC	1 cut(s)	886
AvrII	CCTAGG	1 cut(s)	220
BanI	GGYRCC	3 cut(s)	68, 237, 257
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbsI	GAAGAC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	13, 352, 556
BccI	CCATC	3 cut(s)	58, 330, 548
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	3 cut(s)	27, 341, 570
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	3 cut(s)	28, 342, 571
BmcAI	AGTACT	1 cut(s)	679
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	4 cut(s)	70, 239, 259, 888
BpiI	GAAGAC	1 cut(s)	767
BpuEI	CTTGAG	1 cut(s)	949
BsaJI	CCNNGG	2 cut(s)	220, 329
BsaWI	WCCGGW	2 cut(s)	503, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	1051, 1069
Bse118I	RCCGGY	2 cut(s)	461, 798
Bse3DI	GCAATG	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	220, 329
BseGI	GGATG	2 cut(s)	66, 341
BseLI	CCNNNNNNNGG	2 cut(s)	1051, 1069
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	87
BseXI	GCAGC	3 cut(s)	13, 352, 556
Bsh1236I	CGCG	1 cut(s)	792
BshNI	GGYRCC	3 cut(s)	68, 237, 257
BshTI	ACCGGT	1 cut(s)	798
BsiSI	CCGG	3 cut(s)	462, 504, 799
BslFI	GGGAC	2 cut(s)	748, 872
BslI	CCNNNNNNNGG	2 cut(s)	1051, 1069
BsmFI	GGGAC	2 cut(s)	748, 872
Bsp13I	TCCGGA	1 cut(s)	503
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	1 cut(s)	1026
BspACI	CCGC	1 cut(s)	826
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	792
BspHI	TCATGA	2 cut(s)	580, 688
BspLI	GGNNCC	4 cut(s)	70, 239, 259, 888
BspPI	GGATC	1 cut(s)	1021
BspT107I	GGYRCC	3 cut(s)	68, 237, 257
BsrBI	CCGCTC	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	2 cut(s)	461, 798
BsrGI	TGTACA	1 cut(s)	768
BssAI	RCCGGY	2 cut(s)	461, 798
BssECI	CCNNGG	2 cut(s)	220, 329
BssMI	GATC	1 cut(s)	1026
BssT1I	CCWWGG	2 cut(s)	220, 329
Bst4CI	ACNGT	3 cut(s)	199, 359, 886
Bst6I	CTCTTC	2 cut(s)	140, 471
BstAUI	TGTACA	1 cut(s)	768
BstC8I	GCNNGC	2 cut(s)	864, 944
BstDEI	CTNAG	6 cut(s)	81, 96, 120, 738, 781, 1010
BstF5I	GGATG	2 cut(s)	66, 341
BstFNI	CGCG	1 cut(s)	792
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	1 cut(s)	1029
BstMBI	GATC	1 cut(s)	1026
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	792
BstV1I	GCAGC	3 cut(s)	13, 352, 556
BstV2I	GAAGAC	1 cut(s)	767
BstXI	CCANNNNNNTGG	1 cut(s)	336
BtsCI	GGATG	2 cut(s)	66, 341
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	864, 944
CciI	TCATGA	2 cut(s)	580, 688
CfoI	GCGC	1 cut(s)	792
Cfr10I	RCCGGY	2 cut(s)	461, 798
Cfr13I	GGNCC	1 cut(s)	886
CspAI	ACCGGT	1 cut(s)	798
CviAII	CATG	5 cut(s)	425, 575, 581, 689, 904
CviJI	RGCY	9 cut(s)	163, 193, 208, 328, 343, 384, 633, 862, 942
CviKI_1	RGCY	9 cut(s)	163, 193, 208, 328, 343, 384, 633, 862, 942
DdeI	CTNAG	6 cut(s)	81, 96, 120, 738, 781, 1010
DpnI	GATC	1 cut(s)	1028
DpnII	GATC	1 cut(s)	1026
DraI	TTTAAA	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	140, 471
EarI	CTCTTC	2 cut(s)	140, 471
Eco130I	CCWWGG	2 cut(s)	220, 329
Eco47I	GGWCC	1 cut(s)	886
Eco57I	CTGAAG	2 cut(s)	495, 720
EcoT14I	CCWWGG	2 cut(s)	220, 329
EcoT22I	ATGCAT	1 cut(s)	604
ErhI	CCWWGG	2 cut(s)	220, 329
FaeI	CATG	5 cut(s)	428, 578, 584, 692, 907
FalI	AAGNNNNNCTT	4 cut(s)	731, 763, 764, 796
FaqI	GGGAC	2 cut(s)	748, 872
FatI	CATG	5 cut(s)	424, 574, 580, 688, 903
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	3 cut(s)	27, 341, 570
FokI	GGATG	2 cut(s)	73, 348
Fsp4HI	GCNGC	3 cut(s)	27, 341, 570
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	3 cut(s)	27, 341, 570
HapII	CCGG	3 cut(s)	462, 504, 799
HhaI	GCGC	1 cut(s)	792
Hin1II	CATG	5 cut(s)	428, 578, 584, 692, 907
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	40, 302, 931
HpaII	CCGG	3 cut(s)	462, 504, 799
HphI	GGTGA	4 cut(s)	754, 763, 1031, 1066
Hpy166II	GTNNAC	3 cut(s)	117, 745, 1057
Hpy188I	TCNGA	4 cut(s)	321, 553, 778, 1046
Hpy188III	TCNNGA	6 cut(s)	44, 484, 504, 581, 689, 709
Hpy8I	GTNNAC	3 cut(s)	117, 745, 1057
HpyAV	CCTTC	5 cut(s)	82, 251, 501, 852, 1073
HpyCH4III	ACNGT	3 cut(s)	199, 359, 886
HpyCH4V	TGCA	3 cut(s)	29, 602, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	6 cut(s)	81, 96, 120, 738, 781, 1010
Hsp92II	CATG	5 cut(s)	428, 578, 584, 692, 907
HspAI	GCGC	1 cut(s)	790
Kpn2I	TCCGGA	1 cut(s)	503
KpnI	GGTACC	3 cut(s)	72, 241, 261
Kzo9I	GATC	1 cut(s)	1026
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	3 cut(s)	13, 352, 556
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	13, 1019
MalI	GATC	1 cut(s)	1028
MbiI	CCGCTC	1 cut(s)	828
MboI	GATC	1 cut(s)	1026
MboII	GAAGA	9 cut(s)	101, 157, 193, 488, 661, 724, 727, 772, 854
MluCI	AATT	9 cut(s)	35, 128, 410, 443, 539, 613, 656, 833, 990
MlyI	GAGTC	1 cut(s)	940
MnlI	CCTC	6 cut(s)	51, 91, 174, 187, 725, 1093
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	4 cut(s)	155, 263, 513, 606
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	3 cut(s)	462, 504, 799
MvnI	CGCG	1 cut(s)	792
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	1026
NlaIII	CATG	5 cut(s)	428, 578, 584, 692, 907
NlaIV	GGNNCC	4 cut(s)	70, 239, 259, 888
NmuCI	GTSAC	1 cut(s)	1019
NsiI	ATGCAT	1 cut(s)	604
PagI	TCATGA	2 cut(s)	580, 688
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	2 cut(s)	40, 302
PinAI	ACCGGT	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	28, 342, 571
PleI	GAGTC	1 cut(s)	939
PpsI	GAGTC	1 cut(s)	939
PspN4I	GGNNCC	4 cut(s)	70, 239, 259, 888
PspPI	GGNCC	1 cut(s)	886
RseI	CAYNNNNRTG	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	155, 263, 513, 606
SatI	GCNGC	3 cut(s)	27, 341, 570
Sau3AI	GATC	1 cut(s)	1026
Sau96I	GGNCC	1 cut(s)	886
ScaI	AGTACT	1 cut(s)	679
SchI	GAGTC	1 cut(s)	940
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
Sse9I	AATT	9 cut(s)	35, 128, 410, 443, 539, 613, 656, 833, 990
SsiI	CCGC	1 cut(s)	826
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	220, 329
TaaI	ACNGT	3 cut(s)	199, 359, 886
TaqI	TCGA	4 cut(s)	43, 116, 179, 830
TasI	AATT	9 cut(s)	35, 128, 410, 443, 539, 613, 656, 833, 990
TatI	WGTACW	3 cut(s)	677, 768, 784
TfiI	GAWTC	2 cut(s)	40, 302
Tru1I	TTAA	4 cut(s)	155, 263, 513, 606
Tru9I	TTAA	4 cut(s)	155, 263, 513, 606
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	3 cut(s)	26, 340, 569
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	5 cut(s)	300, 304, 653, 864, 888
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	886
XapI	RAATTY	4 cut(s)	128, 410, 656, 833
XmaJI	CCTAGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	679
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.