Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

11178795 .. 11180054

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAACTTTTGAGTAGGCAAGATTTCGAGGGCATGGTTTTAAATCCCAACTCGTCGAGTTTGGAGATACTAACTATGGTTACTGCTGTTGCTCACATGAAACTGATGAAACAAAAGCAACTAGAAAAGCAGAGGATGATGGGTAACTTCAACTCCAAGAAAGATGAAGCTGAGGCCTACCAATCAGTTTCGACTAAGCAAGAAACTAGAGTGGTAGAGAAGAGTACTAACAATAAGCCTCTGGTAGTAACCTCGAAGAAAAAAAAGCCTATGGTAATGGAGCCCAAAAATACCTTAGGATGTTATAGTGGGAACCTTCAACTTCAAATGGATACCTTAAACTGCAAGAAAGAACCAAATTGTGTCATAGAGAAAGAATCTAGTCCATTTATTCCGCAGACGCGAAGAAGATGGGAGCCCCAAAAAGAAAACGGTGTTAGAGAACAGAAAGATATGAGCATAAAAAAGAATGGTTTGAAAAGAAAATTCCAAGATGAGCATGATAGGGAGAACAAGAAATTAGTACCCCATAGTACTGGTGACTTGCCTGACGAGTTCAAGAACCAGAATGAAACTTCCGGAGGGATTAAGGTGGAGTTGATGATTGGGAAAAAATTGGTTAAGTCTGATTGTGTTGATAATGATGCTAATGATTATGATTCGGATTGCGCGTTGAGGAACAAGAAACATAAAGGCTTCAAGAGAAGGCATAAGAGAAAAATAGTACCAAATCGTAATGCTACTACTACCAGTCATGACTTGCCTGAAAATTTCAAGAAGAAGATTGAAAGTATGGGAGGGAGTAAGGTGAACTTGGTCATTGAGAAGACATTGTACATGTCTGACTTAGCACTTAACCAAAACCGGTTGTCAATGCCTTTCAAACAACTCCGCTCCAAATTCTTGGAAGATGATGAAGTTAGAAGGCTTGCGAACCACGAAACCTTTACACTCCCATTGATAGACACCAGGCTACAAGAAAGAGAGATATGCTTGAGTGAGTGGAGCATGCCCACAAGCAAATGGTATGCTCTGAAAACTCAATGGCACAAGAAAATTGTTGTGGAGAACGAGCTTAGAGAAGGTGACTTGATCCAAGTTTGGTCATTCCGAGATAAGGGGAACAACCTTCACTTGGCACTTTGTTTGGTTGAGAGAAAAGATGAGGCTAGTGATGCTGCTGGGTGTAGAAAGAAATCAAAGAATGGTTTTCTTCTTGGTGAAATCTCTAATAGAAATAGTGGTGGCAGCAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

420

Amino Acids

48.25

Weight (kDa)

9.43

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	256 - 351	8.9e-13	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	894
AccII	CGCG	2 cut(s)	403, 671
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	2 cut(s)	395, 892
AclWI	GGATC	1 cut(s)	1087
AcsI	RAATTY	3 cut(s)	485, 769, 899
AfaI	GTAC	5 cut(s)	226, 525, 535, 726, 836
AfiI	CCNNNNNNNGG	2 cut(s)	1117, 1135
AflIII	ACRYGT	1 cut(s)	837
AgeI	ACCGGT	1 cut(s)	864
AgsI	TTSAA	9 cut(s)	151, 320, 326, 478, 559, 700, 775, 788, 883
AjnI	CCWGG	1 cut(s)	968
AluBI	AGCT	2 cut(s)	170, 1075
AluI	AGCT	2 cut(s)	170, 1075
AlwI	GGATC	1 cut(s)	1087
Aor13HI	TCCGGA	1 cut(s)	578
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	1178, 1248
ApoI	RAATTY	3 cut(s)	485, 769, 899
AsiGI	ACCGGT	1 cut(s)	864
AspLEI	GCGC	1 cut(s)	671
AsuHPI	GGTGA	4 cut(s)	551, 820, 1097, 1232
AxyI	CCTNAGG	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	285, 420
BarI	GAAGNNNNNNTAC	2 cut(s)	818, 850
BbsI	GAAGAC	1 cut(s)	833
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	1165
BccI	CCATC	2 cut(s)	133, 405
BciT130I	CCWGG	1 cut(s)	970
BciVI	GTATCC	1 cut(s)	325
BfaI	CTAG	4 cut(s)	122, 207, 381, 1170
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	2 cut(s)	1179, 1249
BlsI	GCNGC	2 cut(s)	1180, 1250
BmcAI	AGTACT	2 cut(s)	226, 535
Bme1390I	CCNGG	1 cut(s)	970
BmiI	GGNNCC	3 cut(s)	282, 314, 417
BmrFI	CCNGG	1 cut(s)	970
BmsI	GCATC	2 cut(s)	634, 1165
BpiI	GAAGAC	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	1015
BsaWI	WCCGGW	2 cut(s)	578, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	1117, 1135
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	541, 750
Bse21I	CCTNAGG	1 cut(s)	295
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	1 cut(s)	970
BseGI	GGATG	2 cut(s)	141, 305
BseLI	CCNNNNNNNGG	2 cut(s)	1117, 1135
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	541, 750
BseXI	GCAGC	1 cut(s)	1165
BseYI	CCCAGC	1 cut(s)	1181
Bsh1236I	CGCG	2 cut(s)	403, 671
BshFI	GGCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	864
BsiSI	CCGG	2 cut(s)	579, 865
BslI	CCNNNNNNNGG	2 cut(s)	1117, 1135
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	285, 420
Bsp13I	TCCGGA	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	1 cut(s)	1092
BspACI	CCGC	2 cut(s)	395, 892
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	578
BspFNI	CGCG	2 cut(s)	403, 671
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	282, 314, 417
BspPI	GGATC	1 cut(s)	1087
BsrBI	CCGCTC	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	864
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	541, 750
BssAI	RCCGGY	1 cut(s)	864
BssMI	GATC	1 cut(s)	1092
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	2 cut(s)	930, 1010
BstDEI	CTNAG	5 cut(s)	171, 195, 295, 847, 1076
BstF5I	GGATG	2 cut(s)	141, 305
BstFNI	CGCG	2 cut(s)	403, 671
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	1 cut(s)	1095
BstMBI	GATC	1 cut(s)	1092
BstMWI	GCNNNNNNNGC	1 cut(s)	1175
BstNI	CCWGG	1 cut(s)	970
BstNSI	RCATGY	2 cut(s)	841, 1012
BstSCI	CCNGG	1 cut(s)	968
BstUI	CGCG	2 cut(s)	403, 671
BstV1I	GCAGC	1 cut(s)	1165
BstV2I	GAAGAC	1 cut(s)	833
BstXI	CCANNNNNNTGG	2 cut(s)	536, 904
Bsu36I	CCTNAGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	141, 305
BtsI	GCAGTG	1 cut(s)	1258
BtsIMutI	CAGTG	1 cut(s)	1258
Cac8I	GCNNGC	2 cut(s)	930, 1010
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	1 cut(s)	864
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	5 cut(s)	225, 524, 534, 725, 835
CspAI	ACCGGT	1 cut(s)	864
CviAII	CATG	6 cut(s)	34, 97, 500, 755, 838, 1009
CviQI	GTAC	5 cut(s)	225, 524, 534, 725, 835
DdeI	CTNAG	5 cut(s)	171, 195, 295, 847, 1076
DpnI	GATC	1 cut(s)	1094
DpnII	GATC	1 cut(s)	1092
DraI	TTTAAA	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	176
Eco24I	GRGCYC	2 cut(s)	285, 420
Eco81I	CCTNAGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	968
EcoT38I	GRGCYC	2 cut(s)	285, 420
FaeI	CATG	6 cut(s)	37, 100, 503, 758, 841, 1012
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	6 cut(s)	33, 96, 499, 754, 837, 1008
Fnu4HI	GCNGC	2 cut(s)	1179, 1249
FokI	GGATG	2 cut(s)	148, 312
FriOI	GRGCYC	2 cut(s)	285, 420
Fsp4HI	GCNGC	2 cut(s)	1179, 1249
FspBI	CTAG	4 cut(s)	122, 207, 381, 1170
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	2 cut(s)	1179, 1249
GsaI	CCCAGC	1 cut(s)	1185
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	579, 865
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	6 cut(s)	37, 100, 503, 758, 841, 1012
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HinfI	GANTC	2 cut(s)	377, 659
HpaII	CCGG	2 cut(s)	579, 865
HphI	GGTGA	4 cut(s)	551, 820, 1097, 1232
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	5 cut(s)	628, 664, 844, 1035, 1112
Hpy188III	TCNNGA	5 cut(s)	559, 579, 700, 755, 775
Hpy8I	GTNNAC	1 cut(s)	811
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	326, 699, 918, 1076, 1139
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1175
HpyF3I	CTNAG	5 cut(s)	171, 195, 295, 847, 1076
Hsp92II	CATG	6 cut(s)	37, 100, 503, 758, 841, 1012
HspAI	GCGC	1 cut(s)	669
Kpn2I	TCCGGA	1 cut(s)	578
Kzo9I	GATC	1 cut(s)	1092
LmnI	GCTCC	4 cut(s)	280, 415, 899, 1005
Lsp1109I	GCAGC	1 cut(s)	1165
LweI	GCATC	2 cut(s)	634, 1165
MaeI	CTAG	4 cut(s)	122, 207, 381, 1170
MaeIII	GTNAC	5 cut(s)	79, 143, 247, 539, 1085
MalI	GATC	1 cut(s)	1094
MbiI	CCGCTC	1 cut(s)	894
MboI	GATC	1 cut(s)	1092
MboII	GAAGA	9 cut(s)	232, 268, 417, 420, 790, 793, 838, 920, 1205
MhlI	GDGCHC	2 cut(s)	285, 420
MluCI	AATT	7 cut(s)	358, 485, 518, 614, 769, 899, 1056
MnlI	CCTC	9 cut(s)	22, 126, 166, 249, 262, 575, 669, 791, 1159
MroI	TCCGGA	1 cut(s)	578
MseI	TTAA	5 cut(s)	41, 338, 588, 621, 855
MspI	CCGG	2 cut(s)	579, 865
MspR9I	CCNGG	1 cut(s)	970
MvaI	CCWGG	1 cut(s)	970
MvnI	CGCG	2 cut(s)	403, 671
MwoI	GCNNNNNNNGC	1 cut(s)	1175
NdeII	GATC	1 cut(s)	1092
NlaIII	CATG	6 cut(s)	37, 100, 503, 758, 841, 1012
NlaIV	GGNNCC	3 cut(s)	282, 314, 417
NmuCI	GTSAC	2 cut(s)	539, 1085
NspI	RCATGY	2 cut(s)	841, 1012
PaeI	GCATGC	1 cut(s)	1012
PagI	TCATGA	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	176
PciI	ACATGT	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	377, 659
PinAI	ACCGGT	1 cut(s)	864
PkrI	GCNGC	2 cut(s)	1180, 1250
PscI	ACATGT	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	1181
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	3 cut(s)	282, 314, 417
RsaI	GTAC	5 cut(s)	226, 525, 535, 726, 836
RsaNI	GTAC	5 cut(s)	225, 524, 534, 725, 835
SaqAI	TTAA	5 cut(s)	41, 338, 588, 621, 855
SatI	GCNGC	2 cut(s)	1179, 1249
Sau3AI	GATC	1 cut(s)	1092
ScaI	AGTACT	2 cut(s)	226, 535
ScrFI	CCNGG	1 cut(s)	970
SduI	GDGCHC	2 cut(s)	285, 420
SfaNI	GCATC	2 cut(s)	634, 1165
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	7 cut(s)	358, 485, 518, 614, 769, 899, 1056
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	2 cut(s)	395, 892
SspMI	CTAG	4 cut(s)	122, 207, 381, 1170
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	968
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	4 cut(s)	27, 56, 191, 254
TasI	AATT	7 cut(s)	358, 485, 518, 614, 769, 899, 1056
TatI	WGTACW	3 cut(s)	224, 533, 834
TfiI	GAWTC	2 cut(s)	377, 659
Tru1I	TTAA	5 cut(s)	41, 338, 588, 621, 855
Tru9I	TTAA	5 cut(s)	41, 338, 588, 621, 855
TscAI	CASTG	1 cut(s)	1258
TseFI	GTSAC	2 cut(s)	539, 1085
TseI	GCWGC	2 cut(s)	1178, 1248
Tsp45I	GTSAC	2 cut(s)	539, 1085
TspDTI	ATGAA	5 cut(s)	113, 122, 180, 585, 930
TspRI	CASTG	1 cut(s)	1258
XapI	RAATTY	3 cut(s)	485, 769, 899
XceI	RCATGY	2 cut(s)	841, 1012
XspI	CTAG	4 cut(s)	122, 207, 381, 1170
ZrmI	AGTACT	2 cut(s)	226, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.