Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

66368231 .. 66369142

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTGCCTAGGGCAAACTCTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCAAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAATTATTGATGCTAACGGTTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACCGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAATGCAGAAGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCTACTTGAAGAAGAAGATTTGACCTTGAGGCAGTGGAACATGGAAAAGAAAACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAATGAAGTTGCCGATAAAAACAATCTCAAGGAAAAAGACGTAGTACAAGTTTGGTCATTCCGGGATGTGGGAAACAACCTTCACTTTGCTATTGTTTTGGTTAAGAAGGGTGAGAGAAAGGGTGGTGAACATAGTAGTAGTCGAGGGTATAGCCAGCCGCCTTCGCTATCAACAACACCGCGTGATATTGTTGATGGTGAAAGAAGAAGTGGTAGTGGTCAAGGAACAGAATCAAAGGAAGAAGGGATGATAGGAGTTAATAGCAATGTTGAGAGTAATAGTGAGAGAAGTACTATGAGCAATGGCTCTAATGAAAAACATGAAAGTTTAAGCCAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

303

Amino Acids

33.98

Weight (kDa)

8.93

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	102 - 195	1.6e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AccII	CGCG	1 cut(s)	751
AciI	CCGC	3 cut(s)	363, 728, 749
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	3 cut(s)	37, 103, 295
AcuI	CTGAAG	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	752
AfaI	GTAC	4 cut(s)	16, 361, 615, 862
AfiI	CCNNNNNNNGG	2 cut(s)	369, 637
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	4 cut(s)	61, 293, 485, 559
AluBI	AGCT	2 cut(s)	543, 549
AluI	AGCT	2 cut(s)	543, 549
Alw21I	GWGCWC	1 cut(s)	545
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	191, 455
ApoI	RAATTY	3 cut(s)	37, 103, 295
AspA2I	CCTAGG	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	5 cut(s)	176, 334, 692, 707, 779
AvrII	CCTAGG	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	545
BccI	CCATC	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	632
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	728
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	729
BmcAI	AGTACT	1 cut(s)	862
Bme1390I	CCNGG	1 cut(s)	632
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	2 cut(s)	58, 244
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	3 cut(s)	523, 529, 581
BpuMI	CCSGG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	21, 113
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 637
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	458, 458
Bse3DI	GCAATG	2 cut(s)	841, 877
BseDI	CCNNGG	2 cut(s)	21, 113
BseGI	GGATG	3 cut(s)	73, 640, 822
BseLI	CCNNNNNNNGG	2 cut(s)	369, 637
BseMI	GCAATG	2 cut(s)	841, 877
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	458, 458
Bsh1236I	CGCG	1 cut(s)	751
BshFI	GGCC	2 cut(s)	193, 457
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	3 cut(s)	370, 401, 631
BslI	CCNNNNNNNGG	2 cut(s)	369, 637
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	193, 457
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	234, 472
BspACI	CCGC	3 cut(s)	363, 728, 749
BspANI	GGCC	2 cut(s)	193, 457
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	751
BspPI	GGATC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	841, 877
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	458, 458
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	21, 113
BssMI	GATC	2 cut(s)	234, 472
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	146, 417
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	367, 725
BstDEI	CTNAG	2 cut(s)	79, 309
BstF5I	GGATG	3 cut(s)	73, 640, 822
BstFNI	CGCG	1 cut(s)	751
BstKTI	GATC	2 cut(s)	237, 475
BstMBI	GATC	2 cut(s)	234, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	193, 457
BtsCI	GGATG	3 cut(s)	73, 640, 822
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	367, 725
Cfr10I	RCCGGY	1 cut(s)	369
Csp6I	GTAC	4 cut(s)	15, 360, 614, 861
CviAII	CATG	2 cut(s)	517, 890
CviQI	GTAC	4 cut(s)	15, 360, 614, 861
DdeI	CTNAG	2 cut(s)	79, 309
DpnI	GATC	2 cut(s)	236, 474
DpnII	GATC	2 cut(s)	234, 472
DraIII	CACNNNGTG	1 cut(s)	752
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	146, 417
EarI	CTCTTC	2 cut(s)	146, 417
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	545
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	520, 893
FatI	CATG	2 cut(s)	516, 889
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	3 cut(s)	80, 647, 829
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	728
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	728
HaeIII	GGCC	2 cut(s)	193, 457
HapII	CCGG	3 cut(s)	370, 401, 631
Hin1II	CATG	2 cut(s)	520, 893
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	1 cut(s)	800
HpaII	CCGG	3 cut(s)	370, 401, 631
HphI	GGTGA	5 cut(s)	176, 334, 692, 707, 779
Hpy166II	GTNNAC	2 cut(s)	339, 698
Hpy188I	TCNGA	2 cut(s)	22, 414
Hpy8I	GTNNAC	2 cut(s)	339, 698
HpyAV	CCTTC	7 cut(s)	55, 223, 325, 659, 670, 741, 806
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	3 cut(s)	358, 565, 609
HpyCH4V	TGCA	2 cut(s)	419, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	2 cut(s)	79, 309
HpySE526I	ACGT	3 cut(s)	358, 565, 609
Hsp92II	CATG	2 cut(s)	520, 893
Kzo9I	GATC	2 cut(s)	234, 472
LpnPI	CCDG	7 cut(s)	282, 383, 414, 439, 471, 644, 737
LweI	GCATC	2 cut(s)	58, 244
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	3 cut(s)	358, 565, 609
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	2 cut(s)	236, 474
MboI	GATC	2 cut(s)	234, 472
MboII	GAAGA	9 cut(s)	160, 163, 284, 434, 497, 500, 503, 786, 821
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	545
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	6 cut(s)	37, 56, 103, 212, 246, 295
MluNI	TGGCCA	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	6 cut(s)	16, 28, 183, 210, 498, 707
Mox20I	TGGCCA	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	4 cut(s)	144, 672, 828, 899
Msp20I	TGGCCA	1 cut(s)	457
MspI	CCGG	3 cut(s)	370, 401, 631
MspR9I	CCNGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	751
MwoI	GCNNNNNNNGC	1 cut(s)	733
NciI	CCSGG	1 cut(s)	632
NdeII	GATC	2 cut(s)	234, 472
NlaIII	CATG	2 cut(s)	520, 893
NmuCI	GTSAC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	800
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	1 cut(s)	729
Ppu21I	YACGTR	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	4 cut(s)	16, 361, 615, 862
RsaNI	GTAC	4 cut(s)	15, 360, 614, 861
SacI	GAGCTC	1 cut(s)	545
SaqAI	TTAA	4 cut(s)	144, 672, 828, 899
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	2 cut(s)	234, 472
ScaI	AGTACT	1 cut(s)	862
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	545
SetI	ASST	9 cut(s)	20, 66, 361, 503, 545, 551, 568, 612, 651
SfaNI	GCATC	2 cut(s)	58, 244
SmlI	CTYRAG	3 cut(s)	502, 544, 596
SmoI	CTYRAG	3 cut(s)	502, 544, 596
Sse9I	AATT	6 cut(s)	37, 56, 103, 212, 246, 295
SsiI	CCGC	3 cut(s)	363, 728, 749
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	3 cut(s)	361, 568, 612
TaqI	TCGA	1 cut(s)	712
TasI	AATT	6 cut(s)	37, 56, 103, 212, 246, 295
TatI	WGTACW	2 cut(s)	613, 860
TauI	GCSGC	1 cut(s)	730
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	4 cut(s)	144, 672, 828, 899
Tru9I	TTAA	4 cut(s)	144, 672, 828, 899
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	4 cut(s)	401, 588, 897, 906
TspRI	CASTG	1 cut(s)	515
XapI	RAATTY	3 cut(s)	37, 103, 295
XmaJI	CCTAGG	1 cut(s)	113
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.