Rh1DG430300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000766
Physical Location & Seq
Forward (+)
64370230 .. 64370802
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG430300.1

Sequence Viewer

Length: 573 bp
ATGGGTAGTAGTAGTACCCCCAAGGTTAAAGAGCCCAATTATGTAGCTGAAACATATTCCAAAGAGACGGATGCTGATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATCATCATGACAAGGGTTTTCAATTGAAACAACGGAAGCCAATTTTTTTGCACGAGGAATTTGGTACTATCTCCAAGACTAAAGAACCAAATTCATCAATGGGTAAAGAATTTGAGGCGGATGCTTTATACTCAGTTGGCACAATAAGGAGAGACAGGTCTTTCCTTAGGACAAATTATATAACGAGCTCTGTGTTTGGCTCCAAAACTGGTCCGGCTAGCAAACACTCTGATTCAGGGTTTCAGGAAAAAAATGGGTTGACAAAGAAGAAGAGTATTGATGGTGGTGAGGATGGTAAAGCTTGGAGTTTGAAGCCCAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGAGATTCAAGAGGCCTGAGGAGCATATGAGAGCACCCAGATATAGTACTGATCCTAATGACTTGCCTGAAGACTTGAAAAGGAAGATTGAAACTTTGGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.64

Weight (kDa)

9.5

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 3 cut(s) 170, 202, 221
AcuI CTGAAG 1 cut(s) 555
AfaI GTAC 3 cut(s) 16, 178, 514
AgsI TTSAA 6 cut(s) 134, 139, 424, 475, 544, 557
AluBI AGCT 3 cut(s) 47, 300, 413
AluI AGCT 3 cut(s) 47, 300, 413
Alw21I GWGCWC 2 cut(s) 302, 502
Alw26I GTCTC 2 cut(s) 59, 258
AlwI GGATC 1 cut(s) 512
AoxI GGCC 1 cut(s) 479
ApoI RAATTY 3 cut(s) 170, 202, 221
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 410
AsuNHI GCTAGC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 323
AxyI CCTNAGG 2 cut(s) 278, 483
BanII GRGCYC 2 cut(s) 36, 302
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 302, 502
BccI CCATC 2 cut(s) 386, 398
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 59, 258
BfaI CTAG 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 514
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 61, 223
BmtI GCTAGC 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 325
Bse21I CCTNAGG 2 cut(s) 278, 483
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 76, 238, 409
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 2 cut(s) 258, 474
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 500
BshFI GGCC 1 cut(s) 481
BsiHKAI GWGCWC 2 cut(s) 302, 502
BsiSI CCGG 1 cut(s) 326
BsmAI GTCTC 2 cut(s) 59, 258
BsmBI CGTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 36, 302, 502
Bsp143I GATC 2 cut(s) 112, 517
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 257, 475
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 1 cut(s) 512
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 112, 517
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 244, 278, 483
BstF5I GGATG 3 cut(s) 76, 238, 409
BstKTI GATC 2 cut(s) 115, 520
BstMAI GTCTC 2 cut(s) 59, 258
BstMBI GATC 2 cut(s) 112, 517
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 543
Bsu36I CCTNAGG 2 cut(s) 278, 483
BsuRI GGCC 1 cut(s) 481
BtsCI GGATG 3 cut(s) 76, 238, 409
Cac8I GCNNGC 1 cut(s) 331
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 15, 177, 513
CviAII CATG 1 cut(s) 119
CviQI GTAC 3 cut(s) 15, 177, 513
DdeI CTNAG 3 cut(s) 244, 278, 483
DpnI GATC 2 cut(s) 114, 519
DpnII GATC 2 cut(s) 112, 517
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 36, 302
Eco47I GGWCC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 555
Eco81I CCTNAGG 2 cut(s) 278, 483
EcoICRI GAGCTC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 36, 302
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 122
FatI CATG 1 cut(s) 118
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 112
FokI GGATG 3 cut(s) 83, 245, 416
FriOI GRGCYC 2 cut(s) 36, 302
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 481
HapII CCGG 1 cut(s) 326
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 3 cut(s) 94, 344, 471
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 4 cut(s) 98, 119, 356, 475
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 2 cut(s) 448, 560
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 3 cut(s) 244, 278, 483
Hsp92II CATG 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 517
LmnI GCTCC 2 cut(s) 317, 487
LpnPI CCDG 8 cut(s) 253, 306, 333, 339, 341, 495, 517, 546
LweI GCATC 2 cut(s) 61, 223
MaeI CTAG 1 cut(s) 330
MalI GATC 2 cut(s) 114, 519
MboI GATC 2 cut(s) 112, 517
MboII GAAGA 6 cut(s) 391, 394, 448, 457, 548, 562
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 3 cut(s) 36, 302, 502
MluCI AATT 7 cut(s) 37, 134, 153, 170, 202, 221, 286
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 6 cut(s) 94, 160, 220, 394, 471, 478
MseI TTAA 2 cut(s) 27, 450
MspI CCGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeI CATATG 1 cut(s) 492
NdeII GATC 2 cut(s) 112, 517
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 313
PagI TCATGA 1 cut(s) 118
PceI AGGCCT 1 cut(s) 481
PfeI GAWTC 2 cut(s) 344, 471
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 323
RsaI GTAC 3 cut(s) 16, 178, 514
RsaNI GTAC 3 cut(s) 15, 177, 513
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 27, 450
Sau3AI GATC 2 cut(s) 112, 517
Sau96I GGNCC 1 cut(s) 323
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 3 cut(s) 36, 302, 502
SetI ASST 6 cut(s) 27, 49, 272, 302, 415, 571
SfaNI GCATC 2 cut(s) 61, 223
SinI GGWCC 1 cut(s) 323
Sse9I AATT 7 cut(s) 37, 134, 153, 170, 202, 221, 286
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 302
StuI AGGCCT 1 cut(s) 481
StyI CCWWGG 1 cut(s) 21
TaqI TCGA 1 cut(s) 97
TasI AATT 7 cut(s) 37, 134, 153, 170, 202, 221, 286
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 2 cut(s) 344, 471
Tru1I TTAA 2 cut(s) 27, 450
Tru9I TTAA 2 cut(s) 27, 450
TspDTI ATGAA 3 cut(s) 95, 195, 458
TspGWI ACGGA 2 cut(s) 83, 160
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 3 cut(s) 170, 202, 221
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.