Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

52779976 .. 52780925

Gene Structure 950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCGGTATAGGGTTTAAAGAACCCATTTCCATGGTAGGGAAAGAGGCTTATGCAAAGGGACAAAAATTTATGAACTCTGTTTTTGAATCTGTGAGGAAGATTGGTGGGTCAAAAAGAAAGGGTTTTGACAATTTTGACGATCATGAAAGGGGTTTTCAATTCAAGAAGCAGAAGATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTTCCTAGGGCAAACTGTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATTAAATTGAGGAAGCCAAAGAGGAGATCACAACACAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACTGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTAGTTTTCTGAGTGCAGATGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCAACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAACACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACAAGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCATTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATATGCTCCGGTCAGGTCCGCCAGTGTTTTGGAAATTGTATAGACGGTCTTGGAAGAGAAAACAATGTGCCACCCCAATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

294

Amino Acids

33.8

Weight (kDa)

9.91

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	138 - 231	2.1e-15	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
AciI	CCGC	1 cut(s)	818
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	2 cut(s)	3, 569
AcsI	RAATTY	3 cut(s)	68, 214, 280
AfaI	GTAC	2 cut(s)	193, 472
AfiI	CCNNNNNNNGG	3 cut(s)	12, 39, 751
AgsI	TTSAA	6 cut(s)	89, 161, 166, 238, 599, 673
AluBI	AGCT	2 cut(s)	657, 663
AluI	AGCT	2 cut(s)	657, 663
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	3 cut(s)	3, 368, 569
ApoI	RAATTY	3 cut(s)	68, 214, 280
AspA2I	CCTAGG	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	2 cut(s)	353, 445
AvaII	GGWCC	1 cut(s)	815
AvrII	CCTAGG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	659
BccI	CCATC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	713
BfaI	CTAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	607
BlnI	CCTAGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	815
BmsI	GCATC	1 cut(s)	235
BpuEI	CTTGAG	2 cut(s)	637, 643
BsaAI	YACGTR	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	33, 198, 290
BsaWI	WCCGGW	2 cut(s)	511, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 39, 751
Bse118I	RCCGGY	2 cut(s)	5, 480
Bse1I	ACTGG	3 cut(s)	572, 572, 821
BseDI	CCNNGG	3 cut(s)	33, 198, 290
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	12, 39, 751
BseMII	CTCAG	2 cut(s)	270, 518
BseNI	ACTGG	3 cut(s)	572, 572, 821
BseRI	GAGGAG	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	3 cut(s)	5, 370, 571
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	4 cut(s)	6, 481, 512, 808
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	12, 39, 751
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	5, 370, 571
Bso31I	GGTCTC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	4 cut(s)	142, 410, 586, 607
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	818
BspANI	GGCC	3 cut(s)	5, 370, 571
BspCNI	CTCAG	2 cut(s)	269, 519
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	713
BsrFI	RCCGGY	2 cut(s)	5, 480
BsrI	ACTGG	3 cut(s)	572, 572, 821
BssAI	RCCGGY	2 cut(s)	5, 480
BssECI	CCNNGG	3 cut(s)	33, 198, 290
BssMI	GATC	4 cut(s)	142, 410, 586, 607
BssT1I	CCWWGG	2 cut(s)	33, 290
Bst4CI	ACNGT	2 cut(s)	302, 846
Bst6I	CTCTTC	2 cut(s)	323, 848
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	256, 527
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	145, 413, 589, 610
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	4 cut(s)	142, 410, 586, 607
BstX2I	RGATCY	2 cut(s)	586, 607
BstXI	CCANNNNNNTGG	3 cut(s)	34, 828, 877
BstYI	RGATCY	2 cut(s)	586, 607
BsuRI	GGCC	3 cut(s)	5, 370, 571
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	629, 828
Cac8I	GCNNGC	1 cut(s)	478
CciI	TCATGA	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	5, 480
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	192, 471
CviAII	CATG	3 cut(s)	34, 146, 631
CviJI	RGCY	9 cut(s)	5, 50, 203, 370, 376, 400, 571, 657, 663
CviKI_1	RGCY	9 cut(s)	5, 50, 203, 370, 376, 400, 571, 657, 663
CviQI	GTAC	2 cut(s)	192, 471
DdeI	CTNAG	2 cut(s)	256, 527
DpnI	GATC	4 cut(s)	144, 412, 588, 609
DpnII	GATC	4 cut(s)	142, 410, 586, 607
DraI	TTTAAA	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	2 cut(s)	3, 569
Eam1104I	CTCTTC	2 cut(s)	323, 848
EarI	CTCTTC	2 cut(s)	323, 848
EciI	GGCGGA	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	657
Eco130I	CCWWGG	2 cut(s)	33, 290
Eco24I	GRGCYC	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	33, 290
EcoT38I	GRGCYC	1 cut(s)	659
ErhI	CCWWGG	2 cut(s)	33, 290
FaeI	CATG	3 cut(s)	37, 149, 634
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	33, 145, 630
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	659
FspBI	CTAG	1 cut(s)	291
HaeIII	GGCC	3 cut(s)	5, 370, 571
HapII	CCGG	4 cut(s)	6, 481, 512, 808
Hin1II	CATG	3 cut(s)	37, 149, 634
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	4 cut(s)	6, 481, 512, 808
HphI	GGTGA	2 cut(s)	353, 445
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	3 cut(s)	199, 528, 746
Hpy188III	TCNNGA	2 cut(s)	146, 166
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	3 cut(s)	232, 436, 773
HpyCH4III	ACNGT	2 cut(s)	302, 846
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	3 cut(s)	56, 533, 554
HpyF3I	CTNAG	2 cut(s)	256, 527
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	3 cut(s)	37, 149, 634
Kzo9I	GATC	4 cut(s)	142, 410, 586, 607
LmnI	GCTCC	1 cut(s)	810
LpnPI	CCDG	9 cut(s)	19, 494, 525, 553, 585, 682, 798, 821, 834
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	4 cut(s)	144, 412, 588, 609
MboI	GATC	4 cut(s)	142, 410, 586, 607
MboII	GAAGA	9 cut(s)	112, 187, 337, 340, 391, 611, 614, 617, 865
MflI	RGATCY	2 cut(s)	586, 607
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	571
MluCI	AATT	8 cut(s)	68, 133, 161, 214, 233, 280, 389, 833
MluNI	TGGCCA	1 cut(s)	571
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	8 cut(s)	40, 90, 193, 205, 360, 387, 399, 612
Mox20I	TGGCCA	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	571
MseI	TTAA	3 cut(s)	18, 321, 387
MslI	CAYNNNNRTG	2 cut(s)	32, 875
Msp20I	TGGCCA	1 cut(s)	571
MspI	CCGG	4 cut(s)	6, 481, 512, 808
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	142, 410, 586, 607
NlaIII	CATG	3 cut(s)	37, 149, 634
NmuCI	GTSAC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	586, 607
RsaI	GTAC	2 cut(s)	193, 472
RsaNI	GTAC	2 cut(s)	192, 471
RseI	CAYNNNNRTG	2 cut(s)	32, 875
SacI	GAGCTC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	18, 321, 387
Sau3AI	GATC	4 cut(s)	142, 410, 586, 607
Sau96I	GGNCC	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	8 cut(s)	197, 243, 472, 617, 659, 665, 765, 817
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	32, 875
SmlI	CTYRAG	2 cut(s)	616, 658
SmoI	CTYRAG	2 cut(s)	616, 658
Sse9I	AATT	8 cut(s)	68, 133, 161, 214, 233, 280, 389, 833
SsiI	CCGC	1 cut(s)	818
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	659
StyI	CCWWGG	2 cut(s)	33, 290
TaaI	ACNGT	2 cut(s)	302, 846
TaiI	ACGT	1 cut(s)	472
TasI	AATT	8 cut(s)	68, 133, 161, 214, 233, 280, 389, 833
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	18, 321, 387
Tru9I	TTAA	3 cut(s)	18, 321, 387
TscAI	CASTG	2 cut(s)	629, 828
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	4 cut(s)	89, 162, 512, 755
TspRI	CASTG	2 cut(s)	629, 828
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	3 cut(s)	68, 214, 280
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.