Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

35054453 .. 35055523

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1290000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCAGCAAAAGAGAGAAACTTTGATGAGAGAGGGGGCTCTCAAGAAGCCAATGCTAGTCGAGCCGCCCAAGAAACAAAGGTCGCCCCCTATCGATTCTACTAGAACAGATCATTCTCTGAAAAGAAAATGGTCTAGCAATAGGATAAATGATGATCGTGCGCCGAAGAAACAGAGGTCGTGTGATGGGCCGAAGCTTAAGGCTTCTGCTATGGAGTCCTCACGGAGAGAGACTAATGCTATTGGTAGGGGTGACGTGGGATGGAAGAAACGAAAGGTGATGCCGAAGAACAATGTCAAGAAAGCCAAGGGATCGACCAAGAACTCTCCGAAGAAGAAAGAACCGATTGGTAGTCCTTCCACGCCTCCGAAATATCACGACTTGCCTGACGAATTCAAGAGAGAAATTGCAAGGTTGGAGGGGACTAGGCTGGGCTTGGTGATACAGAAGCGAATAACCATGACTGATATATCTCCCGGCGAAAACAGACTGTCAATGCCTGAAGCCCAAATTGTATCAATGGATTTCTTGGAAGCGAAAGAGAAGGAGTTACTTGAGGGACAGCAAACAATGAAGGTTCAGTTAATAGACCCTGGTCTTGTAAAAGGAGATATAAACTTGAGACTCTGGCATATGAAAAGCAGCAAACTGTATGTGTTGAGAACTCAATGGGGTGCGGTTGCTCAGAGGAACAAACTCAAACCTGGCCAGCTTGTTCAGGTTTGGTCGTTCCGGGTTAATGGAGCGCTTCACTTGGCTCTGGTTTTGGTTAAGGAGAGTGGCGGTAAAGGGGATCGTAAGGAGAGTGATGGCAGCGATAGTGGGGGTAGGAGAATAGCTGTGGAAGGTGAAACAAGTGGTGGTAGCGGAGGAGGAACTGAGATAATGGAAGAGAAAAAGGATGAAAACAACGGGAATGCTAGTGCGGCAAGTACTGTGATCAATGGGTCGGACCATGAAAGTCCCAACCCTGGTGGAGACTATGCATGTCCCAACCCTGGTGGAGGCCATGCAAGTCCCAACCCTAGTGGAAGCAGCAAAGAAGATGCGGACGTGGAACGAAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

357

Amino Acids

39.05

Weight (kDa)

9.78

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	144 - 227	2.2e-15	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	65, 677, 783, 867, 926, 1049
AclWI	GGATC	2 cut(s)	319, 801
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	934
AfeI	AGCGCT	1 cut(s)	747
AfiI	CCNNNNNNNGG	3 cut(s)	971, 998, 1004
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	397
AjiI	CACGTC	2 cut(s)	256, 1054
AjnI	CCWGG	4 cut(s)	592, 703, 970, 997
AluBI	AGCT	3 cut(s)	196, 712, 839
AluI	AGCT	3 cut(s)	196, 712, 839
Alw26I	GTCTC	3 cut(s)	224, 616, 972
AlwI	GGATC	2 cut(s)	319, 801
Aor51HI	AGCGCT	1 cut(s)	747
AoxI	GGCC	3 cut(s)	188, 706, 1006
ApeKI	GCWGC	4 cut(s)	4, 642, 813, 1035
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	163, 748
AspS9I	GGNCC	2 cut(s)	188, 952
AsuC2I	CCSGG	2 cut(s)	477, 734
AsuHPI	GGTGA	4 cut(s)	263, 289, 451, 860
AvaII	GGWCC	1 cut(s)	952
BalI	TGGCCA	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	4 cut(s)	16, 654, 825, 1047
BccI	CCATC	3 cut(s)	179, 255, 803
BciT130I	CCWGG	4 cut(s)	594, 705, 972, 999
BclI	TGATCA	1 cut(s)	939
BcnI	CCSGG	2 cut(s)	477, 734
BcoDI	GTCTC	3 cut(s)	224, 616, 972
BfaI	CTAG	6 cut(s)	56, 102, 135, 426, 921, 1026
BfoI	RGCGCY	1 cut(s)	749
BfrI	CTTAAG	1 cut(s)	197
BisI	GCNGC	6 cut(s)	5, 65, 643, 814, 927, 1036
BlsI	GCNGC	6 cut(s)	6, 66, 644, 815, 928, 1037
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	6 cut(s)	477, 594, 705, 734, 972, 999
Bme18I	GGWCC	1 cut(s)	952
BmgBI	CACGTC	2 cut(s)	256, 1054
BmgT120I	GGNCC	2 cut(s)	188, 952
BmrFI	CCNGG	6 cut(s)	477, 594, 705, 734, 972, 999
BmsI	GCATC	2 cut(s)	270, 1036
BoxI	GACNNNNGTC	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	26, 575, 640
BpuMI	CCSGG	2 cut(s)	477, 734
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	306, 592, 970, 997
Bsc4I	CCNNNNNNNGG	3 cut(s)	971, 998, 1004
BseBI	CCWGG	4 cut(s)	594, 705, 972, 999
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	4 cut(s)	306, 592, 970, 997
BseGI	GGATG	2 cut(s)	266, 907
BseLI	CCNNNNNNNGG	3 cut(s)	971, 998, 1004
BseMII	CTCAG	2 cut(s)	698, 870
BseRI	GAGGAG	1 cut(s)	885
BseXI	GCAGC	4 cut(s)	16, 654, 825, 1047
BseYI	CCCAGC	1 cut(s)	430
BshFI	GGCC	3 cut(s)	190, 708, 1008
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	477, 733
BslFI	GGGAC	5 cut(s)	436, 573, 948, 975, 1002
BslI	CCNNNNNNNGG	3 cut(s)	971, 998, 1004
BsmAI	GTCTC	3 cut(s)	224, 616, 972
BsmFI	GGGAC	5 cut(s)	436, 573, 948, 975, 1002
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	3 cut(s)	190, 708, 1008
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	5 cut(s)	109, 154, 311, 793, 939
BspACI	CCGC	6 cut(s)	65, 677, 783, 867, 926, 1049
BspANI	GGCC	3 cut(s)	190, 708, 1008
BspCNI	CTCAG	2 cut(s)	697, 871
BspDI	ATCGAT	1 cut(s)	93
BspPI	GGATC	2 cut(s)	319, 801
BspTI	CTTAAG	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	306, 592, 970, 997
BssMI	GATC	5 cut(s)	109, 154, 311, 793, 939
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	4 cut(s)	594, 705, 972, 999
Bst4CI	ACNGT	3 cut(s)	492, 651, 937
Bst6I	CTCTTC	1 cut(s)	885
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	2 cut(s)	684, 879
BstENI	CCTNNNNNAGG	1 cut(s)	1002
BstF5I	GGATG	2 cut(s)	266, 907
BstH2I	RGCGCY	1 cut(s)	749
BstHHI	GCGC	2 cut(s)	163, 748
BstKTI	GATC	5 cut(s)	112, 157, 314, 796, 942
BstMAI	GTCTC	3 cut(s)	224, 616, 972
BstMBI	GATC	5 cut(s)	109, 154, 311, 793, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 926
BstNI	CCWGG	4 cut(s)	594, 705, 972, 999
BstNSI	RCATGY	1 cut(s)	990
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSCI	CCNGG	6 cut(s)	475, 592, 703, 732, 970, 997
BstV1I	GCAGC	4 cut(s)	16, 654, 825, 1047
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	190, 708, 1008
BsuTUI	ATCGAT	1 cut(s)	93
BtrI	CACGTC	2 cut(s)	256, 1054
BtsCI	GGATG	2 cut(s)	266, 907
Cac8I	GCNNGC	1 cut(s)	710
CfoI	GCGC	2 cut(s)	163, 748
Cfr13I	GGNCC	2 cut(s)	188, 952
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	933
CspCI	CAANNNNNGTGG	6 cut(s)	955, 982, 990, 1009, 1017, 1044
CviAII	CATG	4 cut(s)	460, 956, 987, 1010
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	2 cut(s)	684, 879
DpnI	GATC	5 cut(s)	111, 156, 313, 795, 941
DpnII	GATC	5 cut(s)	109, 154, 311, 793, 939
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	952
Eco47III	AGCGCT	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	522
EcoNI	CCTNNNNNAGG	1 cut(s)	1002
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	4 cut(s)	592, 703, 970, 997
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	988
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	4 cut(s)	463, 959, 990, 1013
FaqI	GGGAC	5 cut(s)	436, 573, 948, 975, 1002
FatI	CATG	4 cut(s)	459, 955, 986, 1009
FauNDI	CATATG	1 cut(s)	633
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	6 cut(s)	5, 65, 643, 814, 927, 1036
FokI	GGATG	2 cut(s)	273, 914
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	6 cut(s)	5, 65, 643, 814, 927, 1036
FspBI	CTAG	6 cut(s)	56, 102, 135, 426, 921, 1026
GlaI	GCGC	2 cut(s)	162, 747
GluI	GCNGC	6 cut(s)	5, 65, 643, 814, 927, 1036
GsaI	CCCAGC	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	190, 708, 1008
HapII	CCGG	2 cut(s)	477, 733
HhaI	GCGC	2 cut(s)	163, 748
Hin1II	CATG	4 cut(s)	463, 959, 990, 1013
Hin6I	GCGC	2 cut(s)	161, 746
HinP1I	GCGC	2 cut(s)	161, 746
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	3 cut(s)	95, 215, 624
HpaII	CCGG	2 cut(s)	477, 733
HphI	GGTGA	4 cut(s)	263, 289, 451, 860
Hpy188I	TCNGA	6 cut(s)	120, 330, 369, 687, 952, 1070
Hpy188III	TCNNGA	4 cut(s)	43, 298, 377, 397
HpyAV	CCTTC	4 cut(s)	366, 538, 568, 839
HpyCH4III	ACNGT	3 cut(s)	492, 651, 937
HpyCH4IV	ACGT	2 cut(s)	255, 1053
HpyCH4V	TGCA	4 cut(s)	4, 410, 986, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 926
HpyF3I	CTNAG	2 cut(s)	684, 879
HpySE526I	ACGT	2 cut(s)	255, 1053
Hsp92II	CATG	4 cut(s)	463, 959, 990, 1013
HspAI	GCGC	2 cut(s)	161, 746
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	5 cut(s)	109, 154, 311, 793, 939
LmnI	GCTCC	1 cut(s)	743
Lsp1109I	GCAGC	4 cut(s)	16, 654, 825, 1047
LweI	GCATC	2 cut(s)	270, 1036
MaeI	CTAG	6 cut(s)	56, 102, 135, 426, 921, 1026
MaeII	ACGT	2 cut(s)	255, 1053
MaeIII	GTNAC	2 cut(s)	251, 549
MalI	GATC	5 cut(s)	111, 156, 313, 795, 941
MboI	GATC	5 cut(s)	109, 154, 311, 793, 939
MboII	GAAGA	7 cut(s)	178, 277, 298, 343, 346, 902, 1055
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	3 cut(s)	392, 405, 510
MluNI	TGGCCA	1 cut(s)	708
MlyI	GAGTC	2 cut(s)	224, 618
MmeI	TCCRAC	2 cut(s)	396, 930
Mox20I	TGGCCA	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	988
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	4 cut(s)	198, 584, 738, 771
Msp20I	TGGCCA	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	2 cut(s)	477, 733
MspR9I	CCNGG	6 cut(s)	477, 594, 705, 734, 972, 999
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	4 cut(s)	594, 705, 972, 999
MwoI	GCNNNNNNNGC	2 cut(s)	61, 926
NciI	CCSGG	2 cut(s)	477, 734
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	5 cut(s)	109, 154, 311, 793, 939
NlaIII	CATG	4 cut(s)	463, 959, 990, 1013
NmuCI	GTSAC	1 cut(s)	251
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	1 cut(s)	990
PctI	GAATGC	1 cut(s)	922
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	6, 66, 644, 815, 928, 1037
PleI	GAGTC	2 cut(s)	223, 618
PpsI	GAGTC	2 cut(s)	223, 618
PshAI	GACNNNNGTC	1 cut(s)	594
Psp6I	CCWGG	4 cut(s)	592, 703, 970, 997
PspFI	CCCAGC	1 cut(s)	430
PspGI	CCWGG	4 cut(s)	592, 703, 970, 997
PspPI	GGNCC	2 cut(s)	188, 952
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
SaqAI	TTAA	4 cut(s)	198, 584, 738, 771
SatI	GCNGC	6 cut(s)	5, 65, 643, 814, 927, 1036
Sau3AI	GATC	5 cut(s)	109, 154, 311, 793, 939
Sau96I	GGNCC	2 cut(s)	188, 952
ScaI	AGTACT	1 cut(s)	934
SchI	GAGTC	2 cut(s)	224, 618
ScrFI	CCNGG	6 cut(s)	477, 594, 705, 734, 972, 999
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	270, 1036
SinI	GGWCC	1 cut(s)	952
SmlI	CTYRAG	4 cut(s)	41, 197, 554, 619
SmoI	CTYRAG	4 cut(s)	41, 197, 554, 619
Sse9I	AATT	3 cut(s)	392, 405, 510
SsiI	CCGC	6 cut(s)	65, 677, 783, 867, 926, 1049
SspMI	CTAG	6 cut(s)	56, 102, 135, 426, 921, 1026
StyD4I	CCNGG	6 cut(s)	475, 592, 703, 732, 970, 997
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	492, 651, 937
TaiI	ACGT	2 cut(s)	258, 1056
TaqI	TCGA	3 cut(s)	60, 93, 314
TasI	AATT	3 cut(s)	392, 405, 510
TatI	WGTACW	1 cut(s)	932
TauI	GCSGC	2 cut(s)	67, 929
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	4 cut(s)	198, 584, 738, 771
Tru9I	TTAA	4 cut(s)	198, 584, 738, 771
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	4 cut(s)	4, 642, 813, 1035
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	587, 650, 918, 972
TspGWI	ACGGA	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	952
XagI	CCTNNNNNAGG	1 cut(s)	1002
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	990
XspI	CTAG	6 cut(s)	56, 102, 135, 426, 921, 1026
ZrmI	AGTACT	1 cut(s)	934
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.