ATMG00820

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0000889
Physical Location & Seq
Reverse (-)
228573 .. 229085
513 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00820.1

Sequence Viewer

Length: 513 bp
ATGCTTACCAGATCAAAGGCTGGCATAAACAAACTAAATCCCAAGTATAGTCTCACTATTACTACCACTATTAAAAAAGAACCAAAATCTGTTATTTTTGCCCTTAAGGATCCAGGATGGTGTCAAGCAATGCAGGAAGAACTTGATGCTCTCTCTCGGAACAAGACTTGGATACTTGTTCCACCTCCAGTTAATCAGAATATTCTTGGTTGTAAATGGGTCTTCAAAACCAAATTACATTCTGATGGTACTCTTGATCGCCTAAAGGCTCGCTTGGTTGCTAAAGGGTTTCATCAAGAAGAAGGTATTTACTTTGTTGAGACCTACAGTCCGGTTGTGAGGACAGCCACTATTCGTACTATCTTGAATGTTGCACAACAGTTAGAGGTTGGCCAATCAATCAATTGGATGTTCAAAATGCATTTCTCCATGGGTATCTTCAAGAAAAAGTTTATATGCATCAATCTCCTGGTTTTACGAATCCTATTCATCCATCCCATGTGTGTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

170

Amino Acids

19.51

Weight (kDa)

9.79

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 54 - 128 1.6e-14 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 104, 117
AcoI YGGCCR 1 cut(s) 391
AfaI GTAC 2 cut(s) 250, 358
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 4 cut(s) 226, 367, 415, 442
AhdI GACNNNNNGTC 1 cut(s) 327
AjnI CCWGG 2 cut(s) 112, 468
Alw26I GTCTC 2 cut(s) 56, 314
AlwI GGATC 2 cut(s) 104, 117
AoxI GGCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 214
BccI CCATC 3 cut(s) 111, 239, 501
BciT130I CCWGG 2 cut(s) 114, 470
BciVI GTATCC 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 56, 314
BfmI CTRYAG 1 cut(s) 325
BfrI CTTAAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 114, 470
BmeRI GACNNNNNGTC 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 114, 470
BmsI GCATC 2 cut(s) 136, 468
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 114, 470
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 4 cut(s) 122, 414, 489, 493
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 188
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 332
BsmAI GTCTC 2 cut(s) 56, 314
BsnI GGCC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 11, 109, 256
Bsp19I CCATGG 1 cut(s) 429
BspANI GGCC 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 2 cut(s) 104, 117
BspTI CTTAAG 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 3 cut(s) 11, 109, 256
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 114, 470
Bst4CI ACNGT 2 cut(s) 329, 381
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 22, 271
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 4 cut(s) 122, 414, 489, 493
BstKTI GATC 3 cut(s) 14, 112, 259
BstMAI GTCTC 2 cut(s) 56, 314
BstMBI GATC 3 cut(s) 11, 109, 256
BstNI CCWGG 2 cut(s) 114, 470
BstSCI CCNGG 2 cut(s) 112, 468
BstSFI CTRYAG 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 4 cut(s) 122, 414, 489, 493
Cac8I GCNNGC 2 cut(s) 22, 271
Csp6I GTAC 2 cut(s) 249, 357
CviAII CATG 2 cut(s) 430, 499
CviJI RGCY 4 cut(s) 20, 269, 347, 393
CviKI_1 RGCY 4 cut(s) 20, 269, 347, 393
CviQI GTAC 2 cut(s) 249, 357
DpnI GATC 3 cut(s) 13, 111, 258
DpnII GATC 3 cut(s) 11, 109, 256
DriI GACNNNNNGTC 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 391
Eam1105I GACNNNNNGTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 112, 468
EcoT14I CCWWGG 1 cut(s) 429
EcoT22I ATGCAT 2 cut(s) 423, 461
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 433, 502
FaiI YATR 6 cut(s) 26, 48, 431, 455, 457, 500
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 2 cut(s) 429, 498
FokI GGATG 4 cut(s) 129, 421, 476, 480
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 332
Hin1II CATG 2 cut(s) 433, 502
HinfI GANTC 1 cut(s) 480
HpaII CCGG 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 159, 198, 244
Hpy188III TCNNGA 4 cut(s) 254, 296, 364, 442
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 2 cut(s) 329, 381
HpyCH4V TGCA 4 cut(s) 133, 374, 421, 459
Hsp92II CATG 2 cut(s) 433, 502
Kzo9I GATC 3 cut(s) 11, 109, 256
LpnPI CCDG 9 cut(s) 6, 22, 99, 119, 126, 201, 345, 455, 482
LweI GCATC 2 cut(s) 136, 468
MalI GATC 3 cut(s) 13, 111, 258
MboI GATC 3 cut(s) 11, 109, 256
MboII GAAGA 4 cut(s) 149, 214, 311, 430
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 2 cut(s) 233, 403
MluNI TGGCCA 1 cut(s) 393
MnlI CCTC 3 cut(s) 195, 333, 379
Mox20I TGGCCA 1 cut(s) 393
Mph1103I ATGCAT 2 cut(s) 423, 461
MscI TGGCCA 1 cut(s) 393
MseI TTAA 3 cut(s) 72, 105, 192
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 114, 470
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 2 cut(s) 114, 470
NcoI CCATGG 1 cut(s) 429
NdeII GATC 3 cut(s) 11, 109, 256
NlaIII CATG 2 cut(s) 433, 502
NlaIV GGNNCC 1 cut(s) 111
NsiI ATGCAT 2 cut(s) 423, 461
PfeI GAWTC 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 112, 468
PspGI CCWGG 2 cut(s) 112, 468
PspN4I GGNNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 250, 358
RsaNI GTAC 2 cut(s) 249, 357
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 3 cut(s) 72, 105, 192
Sau3AI GATC 3 cut(s) 11, 109, 256
ScrFI CCNGG 2 cut(s) 114, 470
SetI ASST 4 cut(s) 187, 307, 326, 390
SfaNI GCATC 2 cut(s) 136, 468
SfcI CTRYAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 2 cut(s) 233, 403
SspI AATATT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 112, 468
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 329, 381
TasI AATT 2 cut(s) 233, 403
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 3 cut(s) 72, 105, 192
Tru9I TTAA 3 cut(s) 72, 105, 192
TspDTI ATGAA 2 cut(s) 281, 478
Vha464I CTTAAG 1 cut(s) 104
Zsp2I ATGCAT 2 cut(s) 423, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.