MD17G1115400.v1.1

3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000889
Physical Location & Seq
Forward (+)
9851094 .. 9855322
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1115400.v1.1.491

Sequence Viewer

Length: 3444 bp
ATGGCGTCACCACCATTACCAAACCCTAATCCCCAAAATTCGTATCTGTCTCTTACGATTCAGAACATCGGCAGTATGGTTCCTATCAAGCTCAAGCGCACCAACTATCTCCCATGGCGTGCCTTGTTTGCTCCTATTCTGCGTCGCTACAAGCTTCTTGGTCTCATTGATGGTACTGAGCCATGTCCGGCTCCTCTTCTCCCTGATCGCTCTATGAATCCAGAGTTTGAGCAGTGGTTTGAGAAAGATCAAAATCTGTTGATCTGGTTGAACTCGACACTCTCTGAAGATCTCATTCCCTTCACGGTTGGAGTGTCTACATCTCGAGAGCTCTGGCAGAAACTTGAACAACGTTTTGGTGGCGTCTCTGATGCGCATGTTCATCAGCTTCGCTCTCGTCTGCACTCTATTCAGAAAGGTCATCAATCGATCTCTGAGTATCTTCAACAAATCAAGGAAATTTCTGATTCTCTCACTGCCGCTGGTGCTCCTATCTCTGATCGAGACCTAATTGCAGCGACACTTCATGGTCTCCCTGATGAATTCGAGTCTTTCATTGACTCAATAATGCTTCGATTGTCTTCTACCTCTCTTGATGAATTACATGGCCTGCTACTTACTAAAGAGTTATCCATAGCTCGTCGCAAACACACTGGTTCTTCTTCTGTTACTGAGCCATTTCAGGTATTCTCTGCTCAGTCTCAGGCTCCTTTATTGCCTACGCCTGCATATCCTCCACCACTCCAATCTTCTTTTCGTTACAACTCTAATCGTGGGAGACAGAATCGCACCTTCCACAGAAGCAATCGCAATCGCAATACCAATCGTGGCTTCTTTAATGGCAATCCTCGTGGTTCTCAGAATTATCCTCACGGCTCTAAGTCCAATTATTCCGGCTTTTCCTCCTCTTCTGGCACCAACACTCAATGTCAAATTTGTGGTTCCACTAGCCACGAAGCTATTGACTGCTTTGACAGAATGAATCCTGACATCTTTGGCAGGGTACCACCAGCCAAACTTGCTGCTTTATGTGCTCATTATTCTTCCAAACCCTCTCCATCTTGGCTACTGGACTCTGGAGCTACATCACATATTACCAATGATATTGCTAATCTTTCTGTCTCCTCTCCCTACACTGGTGAAGACAAGGTCTACGTCGGAGATGGTAAAGGTTTGTGCATTAAAAATGTTGGTTCTTCATATTTACATACTCCTCATACTGCCTTCACGTTGAGTAATGTACTACATGTTCCACATATGAAGCACAATTTACTGTCTGCTTATCAATTTCTCAAAGACAATGATTGTTCTATAACTCTTGACCCTGATGGATCTACTGTAAAGGATCGTGCTTCGGGGAAGATGCTTTTGCGGGGCCGAGTTGAAGATGGGTTTTATCCCCTCCACGGTTTCAATACCACTGTCCTTCCTTCACCATCAACTTCACCATCGGCTTTCCTTAGTGTTAAAGCTCCTCTGAAGATTTGGCATCGCAGACTGGGTCATCCATCGTCTTCACTGTTTCGCAGAGTTCTCTCCAGAAATAATCTTGCTGTACTCGGCAAAACCACTGTGGATTTCTTCTGCTCAGACTGTGCTCTAGCCAAGAACCATAAACTTCCATTTGGATCTGCAAGTTCTACTACAAGTCACAGTCTTCAACTGCTTCATTGTGATCTTTGGGGTCCTACCAATGTTATCTCACCTAGTGGTTTCAAGTATTACATGTTGTTAGTTGATGACTATAGTCGTTATAGTTGGTTGTTTCCTTTAAAGGCCAAGTCTGATGCCTATTCTACTTTCGTTGTATTCAAACAGTATGTAGAGACCTTACTTGATAATAAAATCAAAATTGTTCGCTCAGATTCTGGAGGTGAATTTACTAGTACTCTATTTCGGTCATTTCTTCGTTCTCATGGTATTGTCCACCAATTAAGTTGTCCTCATACCCCTGAACAGAATGGTTGTGCTGAAAGGAAGCATCGCCATATTGTGGAGACTGCTCGTACTTTACTTGTTGCATCTCATGTTCCTCATATTCATTGGGTGGAAGCATTCTCCACAGCTGTGTATCTTATCAATCGGTTGCCAATTTCTGGACTATCTCAATCTCCTTGGGAAATACTCTTCCACAAACCTCCTGATTACTCCCGATTGAAGGTCTTTGGCTGTCGTTGTTTCCCATGGCTTAAGCCTTATGTTCATTCCAAGTTGGATTCTAAAAGTAAAAGTTGCATTTTTCTGGGGTACAGTTTACAACACAAAGGCTACCGATGTCTTGATCCTCAAACTGGACGGATATATATCTCTCGCCATGTGCAGTTTGATGAATCTGCTTATCCATTTCACACAATCTCTCCACCCGCTGCTGCAATCCAAGACTCTACTTCTTCTTCTTCTATGGATTTACATTTCTCTATTCCAGTTTCGAGACTCTCCTCCACCTCTCCATCTTCCGGATCCATTATTGAAGCATCCCTACCTCATCCTTCTTCTGATCCTCCTGGTGCAGTCTCGCATCCTGCCTCGTCCAGTTCTTCCTCATCGCAAGTACCTCCCAGTAATTTTCACCCCATGGTGACTCGTTCCAAAGCTGGAATATACAAGCCTAAAGTTTTTGCAGCTACCAAGCATCCCCTTCCATTGGATATTGATGTTGTCCCCACTACTTATCTCCAGGCATCTAAACACCTTCATTGGCGCTCGGCTATGCAAGATGAATTTAATGCCTTGCAATCTACAGGCACCTGGACGTTAGTACCTCCTTCTCCTACTCACAATGTTATCGGTTGCAAGTGGGTCTTTCGGGTAAAGAAGAAGTCTGATGGTACTGTTGAAAGATTTAAAGCCCGCTTGGTTGCCAAGGGGTTTCACCAACAAGAAGGCATTGATTTTCAAGAGACCTTTAGTCCTGTGGCTAAACCAGTCACCATTCGTGTCCTTCTATCCCTTGCCGTGCAATTTAATTGGTTTTTGAACCAATTAGATATCAGTAACGCTTTTCTTCATGGGGATTTAAAGGAATATGTGTACATGCAGCAACCCCCTGGCTTCATTGATCCTAGCAAGCCTCACCATGTCTGTCAATTGCGCAAATCTCTGTATGGCCTCAAACAGGCTCCCCGTGCTTGGTTTGACAAACTTTTTCAAGCTCTCCTTCAATTTGGATTTGTGCAATCTTCTTCTGATGCGTCATTATTTGTTCTTAACGGTCCATCTCCGGTTATTGTTCTTGTTTACGTCGATGACATCTTAGTCACCGGCCCCAATTCTTCTGCGTTCAAGATCAATTGGCTGATATTCACACCAAGTCTTTGTCCACCAGTCGGTTCCGTTATCTTAAATCCAAGCTTCCCCTTGGTTCCATGGTCGATCCCACGCTCAGCTTGCGGGGGAGTATTAAGGCAGATACTAAAAGAGATCAGCAAGCTGTCAGTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000137 GO:0000139 GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006029 GO:0006082 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006862 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0012505 GO:0015012 GO:0015075 GO:0015215 GO:0015216 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015868 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0022857 GO:0030166 GO:0030173 GO:0030176 GO:0030201 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0031985 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034035 GO:0034036 GO:0034220 GO:0034641 GO:0034645 GO:0034654 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046963 GO:0046964 GO:0050427 GO:0050428 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0072348 GO:0072521 GO:0072522 GO:0072530 GO:0090407 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901135 GO:1901137 GO:1901264 GO:1901293 GO:1901360 GO:1901362 GO:1901505 GO:1901564 GO:1901566 GO:1901576 GO:1901679 GO:1901682 GO:1902559
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UAA

Protein Analysis

1148

Amino Acids

127.54

Weight (kDa)

9.34

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 50 - 209 4.4e-16 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 355 - 432 1.5e-14 Pol polyprotein, beta-barrel domain
gag_pre-integrs PF13976 482 - 536 2.6e-10 GAG-pre-integrase domain
rve PF00665 551 - 651 7.4e-13 Integrase core domain
SH3_retrovirus PF25597 724 - 785 7e-25 Retroviral polymerase SH3-like domain
RVT_2 PF07727 916 - 1093 1.4e-53 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3254
Acc16I TGCGCA 2 cut(s) 375, 3092
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 3 cut(s) 914, 1003, 2744
AccB7I CCANNNNNTGG 2 cut(s) 1993, 2096
AccI GTMKAC 2 cut(s) 317, 1152
AccIII TCCGGA 1 cut(s) 2456
AciI CCGC 5 cut(s) 480, 1372, 2364, 2851, 3390
AclI AACGTT 1 cut(s) 352
AclWI GGATC 9 cut(s) 1339, 1353, 1636, 2276, 2454, 2467, 2492, 3053, 3367
AcsI RAATTY 6 cut(s) 37, 459, 542, 933, 1877, 2720
AcuI CTGAAG 2 cut(s) 306, 1499
AcyI GRCGYC 2 cut(s) 5, 363
AdeI CACNNNGTG 1 cut(s) 1709
AflII CTTAAG 1 cut(s) 2189
AflIII ACRYGT 2 cut(s) 1246, 1725
AhdI GACNNNNNGTC 1 cut(s) 2907
AhlI ACTAGT 1 cut(s) 1883
AjnI CCWGG 4 cut(s) 2503, 2676, 2747, 3046
AjuI GAANNNNNNNTTGG 6 cut(s) 339, 371, 738, 770, 815, 847
AleI CACNNNNGTG 1 cut(s) 2066
Alw21I GWGCWC 4 cut(s) 333, 490, 1036, 1600
AlwI GGATC 9 cut(s) 1339, 1353, 1636, 2276, 2454, 2467, 2492, 3053, 3367
AlwNI CAGNNNCTG 1 cut(s) 1868
Ama87I CYCGRG 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 2456
AoxI GGCC 5 cut(s) 607, 1375, 1776, 3106, 3262
ApeKI GCWGC 6 cut(s) 515, 1022, 2366, 2369, 2621, 3037
ApoI RAATTY 6 cut(s) 37, 459, 542, 933, 1877, 2720
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 4 cut(s) 99, 376, 2703, 3093
AspS9I GGNCC 4 cut(s) 1375, 1685, 3212, 3263
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 2 cut(s) 1685, 3212
BaeI ACNNNNGTAYC 2 cut(s) 2742, 2775
BamHI GGATCC 1 cut(s) 2459
BanI GGYRCC 3 cut(s) 914, 1003, 2744
BanII GRGCYC 1 cut(s) 333
BarI GAAGNNNNNNTAC 2 cut(s) 2463, 2495
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 4 cut(s) 573, 1149, 1506, 1649
Bbv12I GWGCWC 4 cut(s) 333, 490, 1036, 1600
BbvI GCAGC 6 cut(s) 527, 1009, 2353, 2356, 2633, 3049
BceAI ACGGC 2 cut(s) 889, 2939
BciT130I CCWGG 4 cut(s) 2505, 2678, 2749, 3048
BcuI ACTAGT 1 cut(s) 1883
BfaI CTAG 5 cut(s) 948, 1601, 1707, 1884, 3063
BfmI CTRYAG 2 cut(s) 1744, 2739
BfoI RGCGCY 1 cut(s) 2704
BfrI CTTAAG 1 cut(s) 2189
BglII AGATCT 1 cut(s) 289
BisI GCNGC 7 cut(s) 480, 516, 1023, 2367, 2370, 2622, 3038
BlpI GCTNAGC 1 cut(s) 3382
BlsI GCNGC 7 cut(s) 481, 517, 1024, 2368, 2371, 2623, 3039
BmcAI AGTACT 1 cut(s) 1888
Bme1390I CCNGG 4 cut(s) 2505, 2678, 2749, 3048
Bme18I GGWCC 2 cut(s) 1685, 3212
BmeRI GACNNNNNGTC 1 cut(s) 2907
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 4 cut(s) 1375, 1685, 3212, 3263
BmrFI CCNGG 4 cut(s) 2505, 2678, 2749, 3048
BmrI ACTGGG 2 cut(s) 1508, 2553
BmuI ACTGGG 2 cut(s) 1508, 2553
BoxI GACNNNNGTC 1 cut(s) 1746
BpiI GAAGAC 4 cut(s) 573, 1149, 1506, 1649
BpmI CTGGAG 4 cut(s) 1098, 1522, 1890, 2660
Bpu1102I GCTNAGC 1 cut(s) 3382
BpuEI CTTGAG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 428
BsaBI GATNNNNATC 2 cut(s) 252, 2303
BsaHI GRCGYC 2 cut(s) 5, 363
BsaI GGTCTC 5 cut(s) 167, 498, 536, 1820, 2894
BsaJI CCNNGG 9 cut(s) 113, 1405, 2114, 2183, 2574, 2862, 3046, 3357, 3365
BsaWI WCCGGW 2 cut(s) 2456, 3220
BsaXI ACNNNNNCTCC 2 cut(s) 2341, 2371
Bse118I RCCGGY 1 cut(s) 3260
Bse8I GATNNNNATC 2 cut(s) 252, 2303
BseAI TCCGGA 1 cut(s) 2456
BseBI CCWGG 4 cut(s) 2505, 2678, 2749, 3048
BseCI ATCGAT 1 cut(s) 428
BseDI CCNNGG 9 cut(s) 113, 1405, 2114, 2183, 2574, 2862, 3046, 3357, 3365
BseGI GGATG 5 cut(s) 1504, 2474, 2485, 2518, 2632
BseJI GATNNNNATC 2 cut(s) 252, 2303
BseMII CTCAG 9 cut(s) 168, 426, 663, 710, 716, 872, 1602, 1875, 3396
BseRI GAGGAG 6 cut(s) 183, 895, 1114, 1203, 1464, 2428
BseXI GCAGC 6 cut(s) 527, 1009, 2353, 2356, 2633, 3049
BsgI GTGCAG 3 cut(s) 386, 2339, 2529
BshFI GGCC 5 cut(s) 609, 1377, 1778, 3108, 3264
BshNI GGYRCC 3 cut(s) 914, 1003, 2744
BshVI ATCGAT 1 cut(s) 428
BsiHKAI GWGCWC 4 cut(s) 333, 490, 1036, 1600
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 5 cut(s) 188, 894, 2457, 3221, 3261
BslFI GGGAC 1 cut(s) 2645
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 2645
BsmI GAATGC 1 cut(s) 2054
BsnI GGCC 5 cut(s) 609, 1377, 1778, 3108, 3264
Bso31I GGTCTC 5 cut(s) 167, 498, 536, 1820, 2894
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 4 cut(s) 333, 490, 1036, 1600
Bsp13I TCCGGA 1 cut(s) 2456
Bsp1407I TGTACA 1 cut(s) 3030
Bsp1720I GCTNAGC 1 cut(s) 3382
Bsp19I CCATGG 4 cut(s) 113, 2183, 2574, 3365
BspACI CCGC 5 cut(s) 480, 1372, 2364, 2851, 3390
BspANI GGCC 5 cut(s) 609, 1377, 1778, 3108, 3264
BspCNI CTCAG 9 cut(s) 169, 427, 664, 709, 715, 871, 1601, 1874, 3395
BspDI ATCGAT 1 cut(s) 428
BspEI TCCGGA 1 cut(s) 2456
BspPI GGATC 9 cut(s) 1339, 1353, 1636, 2276, 2454, 2467, 2492, 3053, 3367
BspT107I GGYRCC 3 cut(s) 914, 1003, 2744
BspTI CTTAAG 1 cut(s) 2189
BspTNI GGTCTC 5 cut(s) 167, 498, 536, 1820, 2894
BsrFI RCCGGY 1 cut(s) 3260
BsrGI TGTACA 1 cut(s) 3030
BssAI RCCGGY 1 cut(s) 3260
BssECI CCNNGG 9 cut(s) 113, 1405, 2114, 2183, 2574, 2862, 3046, 3357, 3365
BssNI GRCGYC 2 cut(s) 5, 363
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 7 cut(s) 113, 2114, 2183, 2574, 2862, 3357, 3365
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 4 cut(s) 2505, 2678, 2749, 3048
Bst6I CTCTTC 3 cut(s) 201, 913, 2132
BstACI GRCGYC 2 cut(s) 5, 363
BstAFI CTTAAG 1 cut(s) 2189
BstAUI TGTACA 1 cut(s) 3030
BstC8I GCNNGC 7 cut(s) 120, 611, 726, 2851, 3068, 3388, 3428
BstDSI CCRYGG 5 cut(s) 113, 1405, 2183, 2574, 3365
BstENI CCTNNNNNAGG 1 cut(s) 3113
BstF5I GGATG 5 cut(s) 1504, 2474, 2485, 2518, 2632
BstH2I RGCGCY 1 cut(s) 2704
BstHHI GCGC 4 cut(s) 99, 376, 2703, 3093
BstMWI GCNNNNNNNGC 6 cut(s) 128, 485, 1019, 1031, 3125, 3387
BstNI CCWGG 4 cut(s) 2505, 2678, 2749, 3048
BstNSI RCATGY 4 cut(s) 380, 1250, 1729, 3037
BstPAI GACNNNNGTC 1 cut(s) 1746
BstSCI CCNGG 4 cut(s) 2503, 2676, 2747, 3046
BstSFI CTRYAG 2 cut(s) 1744, 2739
BstV1I GCAGC 6 cut(s) 527, 1009, 2353, 2356, 2633, 3049
BstV2I GAAGAC 4 cut(s) 573, 1149, 1506, 1649
BstX2I RGATCY 4 cut(s) 289, 1331, 1628, 2459
BstYI RGATCY 4 cut(s) 289, 1331, 1628, 2459
Bsu15I ATCGAT 1 cut(s) 428
BsuRI GGCC 5 cut(s) 609, 1377, 1778, 3108, 3264
BsuTUI ATCGAT 1 cut(s) 428
BtgI CCRYGG 5 cut(s) 113, 1405, 2183, 2574, 3365
BtgZI GCGATG 3 cut(s) 1475, 1967, 2529
BtsCI GGATG 5 cut(s) 1504, 2474, 2485, 2518, 2632
BtsI GCAGTG 2 cut(s) 239, 474
BtsIMutI CAGTG 7 cut(s) 239, 474, 651, 1134, 1419, 1517, 1569
Cac8I GCNNGC 7 cut(s) 120, 611, 726, 2851, 3068, 3388, 3428
CaiI CAGNNNCTG 1 cut(s) 1868
CfoI GCGC 4 cut(s) 99, 376, 2703, 3093
Cfr10I RCCGGY 1 cut(s) 3260
Cfr13I GGNCC 4 cut(s) 1375, 1685, 3212, 3263
ClaI ATCGAT 1 cut(s) 428
CseI GACGC 3 cut(s) 131, 352, 3180
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
DraI TTTAAA 3 cut(s) 1773, 2845, 3018
DraIII CACNNNGTG 1 cut(s) 1709
DrdI GACNNNNNNGTC 1 cut(s) 3254
DriI GACNNNNNGTC 1 cut(s) 2907
DseDI GACNNNNNNGTC 1 cut(s) 3254
Eam1104I CTCTTC 3 cut(s) 201, 913, 2132
Eam1105I GACNNNNNGTC 1 cut(s) 2907
EarI CTCTTC 3 cut(s) 201, 913, 2132
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 7 cut(s) 113, 2114, 2183, 2574, 2862, 3357, 3365
Eco24I GRGCYC 1 cut(s) 333
Eco31I GGTCTC 5 cut(s) 167, 498, 536, 1820, 2894
Eco32I GATATC 1 cut(s) 2989
Eco47I GGWCC 2 cut(s) 1685, 3212
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 306, 1499
Eco88I CYCGRG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 3113
EcoO109I RGGNCCY 1 cut(s) 1685
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 4 cut(s) 2503, 2676, 2747, 3046
EcoRV GATATC 1 cut(s) 2989
EcoT14I CCWWGG 7 cut(s) 113, 2114, 2183, 2574, 2862, 3357, 3365
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 7 cut(s) 113, 2114, 2183, 2574, 2862, 3357, 3365
Esp3I CGTCTC 1 cut(s) 370
FalI AAGNNNNNCTT 4 cut(s) 2786, 2818, 3141, 3173
FaqI GGGAC 1 cut(s) 2645
FauI CCCGC 4 cut(s) 1365, 2371, 2858, 3383
FauNDI CATATG 1 cut(s) 1257
FblI GTMKAC 2 cut(s) 317, 1152
Fnu4HI GCNGC 7 cut(s) 480, 516, 1023, 2367, 2370, 2622, 3038
FokI GGATG 5 cut(s) 1491, 2461, 2472, 2505, 2619
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 7 cut(s) 480, 516, 1023, 2367, 2370, 2622, 3038
FspAI RTGCGCAY 1 cut(s) 375
FspBI CTAG 5 cut(s) 948, 1601, 1707, 1884, 3063
FspI TGCGCA 2 cut(s) 375, 3092
GlaI GCGC 4 cut(s) 98, 375, 2702, 3092
GluI GCNGC 7 cut(s) 480, 516, 1023, 2367, 2370, 2622, 3038
GsuI CTGGAG 4 cut(s) 1098, 1522, 1890, 2660
HaeII RGCGCY 1 cut(s) 2704
HaeIII GGCC 5 cut(s) 609, 1377, 1778, 3108, 3264
HapII CCGG 5 cut(s) 188, 894, 2457, 3221, 3261
HgaI GACGC 3 cut(s) 131, 352, 3180
HhaI GCGC 4 cut(s) 99, 376, 2703, 3093
Hin1I GRCGYC 2 cut(s) 5, 363
Hin6I GCGC 4 cut(s) 97, 374, 2701, 3091
HinP1I GCGC 4 cut(s) 97, 374, 2701, 3091
HindIII AAGCTT 2 cut(s) 152, 3349
HpaII CCGG 5 cut(s) 188, 894, 2457, 3221, 3261
Hpy166II GTNNAC 7 cut(s) 318, 1153, 1927, 2255, 3031, 3238, 3320
Hpy8I GTNNAC 7 cut(s) 318, 1153, 1927, 2255, 3031, 3238, 3320
Hpy99I CGWCG 4 cut(s) 147, 645, 1160, 3245
HpyCH4IV ACGT 5 cut(s) 352, 1155, 1229, 2753, 3240
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 485, 1019, 1031, 3125, 3387
HpySE526I ACGT 5 cut(s) 352, 1155, 1229, 2753, 3240
Hsp92I GRCGYC 2 cut(s) 5, 363
HspAI GCGC 4 cut(s) 97, 374, 2701, 3091
Kpn2I TCCGGA 1 cut(s) 2456
KpnI GGTACC 1 cut(s) 1007
LmnI GCTCC 7 cut(s) 136, 196, 493, 712, 1079, 1477, 3124
Lsp1109I GCAGC 6 cut(s) 527, 1009, 2353, 2356, 2633, 3049
MaeI CTAG 5 cut(s) 948, 1601, 1707, 1884, 3063
MaeII ACGT 5 cut(s) 352, 1155, 1229, 2753, 3240
MaeIII GTNAC 8 cut(s) 6, 667, 758, 1649, 2578, 2926, 2993, 3256
MfeI CAATTG 2 cut(s) 3086, 3289
MflI RGATCY 4 cut(s) 289, 1331, 1628, 2459
MhlI GDGCHC 4 cut(s) 333, 490, 1036, 1600
MlyI GAGTC 6 cut(s) 554, 557, 1067, 2375, 2427, 2575
MmeI TCCRAC 3 cut(s) 289, 1138, 2193
MroI TCCGGA 1 cut(s) 2456
MslI CAYNNNNRTG 1 cut(s) 2066
MspA1I CMGCKG 3 cut(s) 482, 2066, 2366
MspCI CTTAAG 1 cut(s) 2189
MspI CCGG 5 cut(s) 188, 894, 2457, 3221, 3261
MspR9I CCNGG 4 cut(s) 2505, 2678, 2749, 3048
MunI CAATTG 2 cut(s) 3086, 3289
Mva1269I GAATGC 1 cut(s) 2054
MvaI CCWGG 4 cut(s) 2505, 2678, 2749, 3048
MwoI GCNNNNNNNGC 6 cut(s) 128, 485, 1019, 1031, 3125, 3387
NcoI CCATGG 4 cut(s) 113, 2183, 2574, 3365
NdeI CATATG 1 cut(s) 1257
NmeAIII GCCGAG 3 cut(s) 1403, 1539, 2684
NmuCI GTSAC 5 cut(s) 6, 1649, 2578, 2926, 3256
NsbI TGCGCA 2 cut(s) 375, 3092
NspI RCATGY 4 cut(s) 380, 1250, 1729, 3037
OliI CACNNNNGTG 1 cut(s) 2066
PaeR7I CTCGAG 1 cut(s) 324
PciI ACATGT 2 cut(s) 1246, 1725
PctI GAATGC 1 cut(s) 2054
PfeI GAWTC 8 cut(s) 58, 217, 467, 784, 982, 1865, 2216, 2330
PflFI GACNNNGTC 2 cut(s) 1148, 1500
PflMI CCANNNNNTGG 2 cut(s) 1993, 2096
PkrI GCNGC 7 cut(s) 481, 517, 1024, 2368, 2371, 2623, 3039
PleI GAGTC 6 cut(s) 554, 556, 1067, 2375, 2427, 2575
PpsI GAGTC 6 cut(s) 554, 556, 1067, 2375, 2427, 2575
PpuMI RGGWCCY 1 cut(s) 1685
PscI ACATGT 2 cut(s) 1246, 1725
PshAI GACNNNNGTC 1 cut(s) 1746
Psp124BI GAGCTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 1685
Psp6I CCWGG 4 cut(s) 2503, 2676, 2747, 3046
PspGI CCWGG 4 cut(s) 2503, 2676, 2747, 3046
PspPI GGNCC 4 cut(s) 1375, 1685, 3212, 3263
PspPPI RGGWCCY 1 cut(s) 1685
PsrI GAACNNNNNNTAC 2 cut(s) 1233, 1265
PstNI CAGNNNCTG 1 cut(s) 1868
PsuI RGATCY 4 cut(s) 289, 1331, 1628, 2459
PsyI GACNNNGTC 2 cut(s) 1148, 1500
PvuII CAGCTG 1 cut(s) 2066
RseI CAYNNNNRTG 1 cut(s) 2066
SacI GAGCTC 1 cut(s) 333
SatI GCNGC 7 cut(s) 480, 516, 1023, 2367, 2370, 2622, 3038
Sau96I GGNCC 4 cut(s) 1375, 1685, 3212, 3263
ScaI AGTACT 1 cut(s) 1888
SchI GAGTC 6 cut(s) 554, 557, 1067, 2375, 2427, 2575
ScrFI CCNGG 4 cut(s) 2505, 2678, 2749, 3048
SduI GDGCHC 4 cut(s) 333, 490, 1036, 1600
SfcI CTRYAG 2 cut(s) 1744, 2739
Sfr274I CTCGAG 1 cut(s) 324
SinI GGWCC 2 cut(s) 1685, 3212
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 2066
SmlI CTYRAG 3 cut(s) 92, 324, 2189
SmoI CTYRAG 3 cut(s) 92, 324, 2189
SpeI ACTAGT 1 cut(s) 1883
SsiI CCGC 5 cut(s) 480, 1372, 2364, 2851, 3390
SspMI CTAG 5 cut(s) 948, 1601, 1707, 1884, 3063
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 4 cut(s) 2503, 2676, 2747, 3046
StyI CCWWGG 7 cut(s) 113, 2114, 2183, 2574, 2862, 3357, 3365
TaiI ACGT 5 cut(s) 355, 1158, 1232, 2756, 3243
TaqI TCGA 9 cut(s) 275, 325, 428, 502, 546, 574, 2429, 3243, 3371
TaqII GACCGA 1 cut(s) 1887
TatI WGTACW 4 cut(s) 1240, 1555, 1886, 3030
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 8 cut(s) 58, 217, 467, 784, 982, 1865, 2216, 2330
TscAI CASTG 7 cut(s) 239, 481, 658, 1141, 1426, 1524, 1576
TseFI GTSAC 5 cut(s) 6, 1649, 2578, 2926, 3256
TseI GCWGC 6 cut(s) 515, 1022, 2366, 2369, 2621, 3037
Tsp45I GTSAC 5 cut(s) 6, 1649, 2578, 2926, 3256
TspGWI ACGGA 2 cut(s) 2311, 3322
TspRI CASTG 7 cut(s) 239, 481, 658, 1141, 1426, 1524, 1576
Tth111I GACNNNGTC 2 cut(s) 1148, 1500
Van91I CCANNNNNTGG 2 cut(s) 1993, 2096
Vha464I CTTAAG 1 cut(s) 2189
VpaK11BI GGWCC 2 cut(s) 1685, 3212
XagI CCTNNNNNAGG 1 cut(s) 3113
XapI RAATTY 6 cut(s) 37, 459, 542, 933, 1877, 2720
XceI RCATGY 4 cut(s) 380, 1250, 1729, 3037
XhoI CTCGAG 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 317, 1152
XspI CTAG 5 cut(s) 948, 1601, 1707, 1884, 3063
ZrmI AGTACT 1 cut(s) 1888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.