pycom03g02970

Nuclear cap-binding protein subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
2313638 .. 2313937
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02970.1

Sequence Viewer

Length: 300 bp
ATGGAAGGTGCCAAACCTTGTTGCACTCCTCTCGGGTCTCAGAAGCTGGACCACAGTGGGCCTCTCTTATCCAATCCCACTGAATATCGTTCCATAGTTGGTGGATTCCAATATCTCACTTGGACTCGACCGGATCTTGCATTTGCTGTTAATCAGATATGTCAGTTTATGCATGCTCCAAGAGAACAACACCTTCAAGCAGCAAAAAGGGTTCTCAGATTTCTTAAAGGTCCTATTTCTCATGGTTTATGGTTTACTAAAGGTCCCATCACTCTTTCAGCTTACTCTGATGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0000956 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009987 GO:0010033 GO:0010228 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0019439 GO:0022414 GO:0031047 GO:0031050 GO:0031053 GO:0031503 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033993 GO:0034470 GO:0034518 GO:0034613 GO:0034641 GO:0034655 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0097305 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901698 GO:1901699 GO:1901700
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.02

Weight (kDa)

8.93

Isoelectric Point (pI)

26.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AclWI GGATC 1 cut(s) 141
AgsI TTSAA 1 cut(s) 197
AluBI AGCT 2 cut(s) 46, 281
AluI AGCT 2 cut(s) 46, 281
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 49, 59, 230, 263
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 3 cut(s) 49, 230, 263
BanI GGYRCC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BcoDI GTCTC 1 cut(s) 42
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 3 cut(s) 49, 230, 263
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 4 cut(s) 49, 59, 230, 263
BmiI GGNNCC 2 cut(s) 10, 265
BmsI GCATC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 130
BseMII CTCAG 2 cut(s) 53, 229
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 52, 228
BspLI GGNNCC 2 cut(s) 10, 265
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 42
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 39, 215
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 61, 78
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 46
Cfr13I GGNCC 4 cut(s) 49, 59, 230, 263
CviAII CATG 2 cut(s) 173, 242
CviJI RGCY 3 cut(s) 46, 61, 281
CviKI_1 RGCY 3 cut(s) 46, 61, 281
DdeI CTNAG 2 cut(s) 39, 215
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 3 cut(s) 49, 230, 263
Eco88I CYCGRG 1 cut(s) 32
EcoO109I RGGNCCY 2 cut(s) 230, 263
EcoT22I ATGCAT 1 cut(s) 174
FaeI CATG 2 cut(s) 176, 245
FaiI YATR 6 cut(s) 95, 160, 170, 174, 243, 250
FaqI GGGAC 1 cut(s) 249
FatI CATG 2 cut(s) 172, 241
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 176, 245
HinfI GANTC 2 cut(s) 105, 124
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 4 cut(s) 42, 156, 218, 289
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 24, 140, 172
HpyF3I CTNAG 2 cut(s) 39, 215
Hsp92II CATG 2 cut(s) 176, 245
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 32, 144
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 280
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MflI RGATCY 1 cut(s) 133
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 2 cut(s) 39, 72
Mph1103I ATGCAT 1 cut(s) 174
MseI TTAA 2 cut(s) 150, 225
MspI CCGG 1 cut(s) 131
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 176, 245
NlaIV GGNNCC 2 cut(s) 10, 265
NsiI ATGCAT 1 cut(s) 174
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 2 cut(s) 230, 263
Psp5II RGGWCCY 2 cut(s) 230, 263
PspN4I GGNNCC 2 cut(s) 10, 265
PspPI GGNCC 4 cut(s) 49, 59, 230, 263
PspPPI RGGWCCY 2 cut(s) 230, 263
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 2 cut(s) 150, 225
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 4 cut(s) 49, 59, 230, 263
SchI GAGTC 1 cut(s) 118
SetI ASST 7 cut(s) 10, 19, 48, 195, 232, 265, 283
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 3 cut(s) 49, 230, 263
SphI GCATGC 1 cut(s) 176
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 127
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 150, 225
Tru9I TTAA 2 cut(s) 150, 225
TscAI CASTG 2 cut(s) 61, 85
TseI GCWGC 1 cut(s) 200
TspRI CASTG 2 cut(s) 61, 85
VpaK11BI GGWCC 3 cut(s) 49, 230, 263
XceI RCATGY 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.