Rw4G009390

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000889
Physical Location & Seq
Forward (+)
21077550 .. 21078335
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009390.1

Sequence Viewer

Length: 786 bp
ATGATTGGCGCCAAACCCTGCACCACTCCCTCTTCTTCCTCCAAACTTGATCTTTCTGGGACACCTCTAGTTAATCCCACTGAATACAGATCCCTTGTGGGGGCCCTTCAATATCTCACTTGGACACGCCCAGACATTTCTTTTGCTGTTGGTCAATTGTGCCAATTCATGCATTCTCCTCAAGATATTCACCTACAAGCTGCAAAACGGGTTCTACTCTATCTCAAAGGCACACTTTATCACAGCCTTCAATTCTCAAAAGGAGATCTTCTCCTCCATGGCTACTCTGATGCTGACTGGGCTGGCTGCCCTGTTGATCGTCGTTCCATCAGTGGCTATTGTATATTTCTTGGCCCAAACCTCATTTCCTGGTCTTCCAAGAAGCAACACTCTGTCTCACGTTCCTCCACTGAATCTGAATATCGTGCTCTTGCTCAGACTGCTGCTGAGGTTATTTGGATATGCAAACTTCTCCGGGATTATCACTTTCCCTTGCCCAAGGCACCCTGCATTTGGTGCGATAATGTTAGTGCCCTTGCCCTTGCTTCGAACCCAATCCATCATAACAGAACGAAGCACATTGATATGGATTACCATTATGTTCGAGAAATGGTCCTTAGTAAGTTCCTCCATGTTTCATACCTGTCCACTACTCAGCAACCAGCTGACATCTTCACGAAGACACTCTCCAAAGATCGGTTCCATTTCTTACGAGGCAAGCTTCCTGTTCGTGTTACTCCCTTTAGCTTGAGGGGGGATATTGATCATAAGCTGCAGTCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

261

Amino Acids

29.54

Weight (kDa)

9.21

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 8, 502
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 4 cut(s) 99, 100, 513, 696
AgsI TTSAA 2 cut(s) 110, 251
AjnI CCWGG 1 cut(s) 368
AjuI GAANNNNNNNTTGG 4 cut(s) 349, 381, 683, 715
AluBI AGCT 5 cut(s) 200, 665, 721, 747, 772
AluI AGCT 5 cut(s) 200, 665, 721, 747, 772
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 1 cut(s) 84
AoxI GGCC 2 cut(s) 102, 352
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 200, 306, 443, 772
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 4 cut(s) 102, 103, 353, 613
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 613
BaeGI GKGCMC 2 cut(s) 106, 535
BanI GGYRCC 2 cut(s) 8, 502
BanII GRGCYC 1 cut(s) 106
BbsI GAAGAC 2 cut(s) 366, 686
Bbv12I GWGCWC 1 cut(s) 430
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 187, 293, 430, 759
BccI CCATC 2 cut(s) 335, 567
BciT130I CCWGG 1 cut(s) 370
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 773
BfoI RGCGCY 1 cut(s) 12
BglII AGATCT 1 cut(s) 265
BisI GCNGC 4 cut(s) 201, 307, 444, 773
BlsI GCNGC 4 cut(s) 202, 308, 445, 774
Bme1390I CCNGG 2 cut(s) 370, 476
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 4 cut(s) 102, 103, 353, 613
BmiI GGNNCC 5 cut(s) 10, 103, 104, 504, 701
BmrFI CCNGG 2 cut(s) 370, 476
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 2 cut(s) 366, 686
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 548
BpuEI CTTGAG 2 cut(s) 165, 769
BpuMI CCSGG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 277, 498
Bsc4I CCNNNNNNNGG 4 cut(s) 99, 100, 513, 696
Bse1I ACTGG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 277, 498
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 4 cut(s) 99, 100, 513, 696
BseMII CTCAG 3 cut(s) 438, 449, 668
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 168, 263
BseSI GKGCMC 2 cut(s) 106, 535
BseXI GCAGC 4 cut(s) 187, 293, 430, 759
BsgI GTGCAG 1 cut(s) 4
BshFI GGCC 2 cut(s) 104, 354
BshNI GGYRCC 2 cut(s) 8, 502
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 1 cut(s) 475
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 4 cut(s) 99, 100, 513, 696
BsmAI GTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 104, 354
Bsp119I TTCGAA 1 cut(s) 548
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 106, 430, 535
Bsp143I GATC 6 cut(s) 49, 89, 265, 316, 694, 763
Bsp19I CCATGG 1 cut(s) 277
BspANI GGCC 2 cut(s) 104, 354
BspCNI CTCAG 3 cut(s) 439, 448, 667
BspLI GGNNCC 5 cut(s) 10, 103, 104, 504, 701
BspMAI CTGCAG 1 cut(s) 777
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 548
BspT107I GGYRCC 2 cut(s) 8, 502
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 277, 498
BssMI GATC 6 cut(s) 49, 89, 265, 316, 694, 763
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 277, 498
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 783
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 304, 719
BstDEI CTNAG 4 cut(s) 435, 447, 617, 654
BstDSI CCRYGG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 6 cut(s) 52, 92, 268, 319, 697, 766
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 6 cut(s) 49, 89, 265, 316, 694, 763
BstMWI GCNNNNNNNGC 3 cut(s) 299, 440, 516
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 368, 474
BstSFI CTRYAG 1 cut(s) 773
BstSLI GKGCMC 2 cut(s) 106, 535
BstV1I GCAGC 4 cut(s) 187, 293, 430, 759
BstV2I GAAGAC 2 cut(s) 366, 686
BstX2I RGATCY 2 cut(s) 89, 265
BstYI RGATCY 2 cut(s) 89, 265
BsuRI GGCC 2 cut(s) 104, 354
BtgI CCRYGG 1 cut(s) 277
BtsIMutI CAGTG 3 cut(s) 78, 337, 408
Cac8I GCNNGC 2 cut(s) 304, 719
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 4 cut(s) 102, 103, 353, 613
CviAII CATG 3 cut(s) 169, 278, 632
DdeI CTNAG 4 cut(s) 435, 447, 617, 654
DinI GGCGCC 1 cut(s) 10
DpnI GATC 6 cut(s) 51, 91, 267, 318, 696, 765
DpnII GATC 6 cut(s) 49, 89, 265, 316, 694, 763
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 277, 498
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 613
EcoO109I RGGNCCY 2 cut(s) 102, 103
EcoRII CCWGG 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 277, 498
EcoT22I ATGCAT 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 106
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 277, 498
FaeI CATG 3 cut(s) 172, 281, 635
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 252, 284
FaqI GGGAC 1 cut(s) 73
FatI CATG 3 cut(s) 168, 277, 631
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 4 cut(s) 201, 307, 444, 773
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 4 cut(s) 201, 307, 444, 773
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 10
GluI GCNGC 4 cut(s) 201, 307, 444, 773
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 104, 354
HapII CCGG 1 cut(s) 475
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 172, 281, 635
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 1 cut(s) 413
HpaII CCGG 1 cut(s) 475
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 3 cut(s) 289, 418, 438
Hpy188III TCNNGA 3 cut(s) 182, 605, 676
Hpy8I GTNNAC 1 cut(s) 648
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 2 cut(s) 116, 257
HpyCH4III ACNGT 1 cut(s) 783
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 6 cut(s) 21, 172, 203, 465, 510, 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 440, 516
HpyF3I CTNAG 4 cut(s) 435, 447, 617, 654
HpySE526I ACGT 1 cut(s) 400
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 172, 281, 635
HspAI GCGC 1 cut(s) 9
KasI GGCGCC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 6 cut(s) 49, 89, 265, 316, 694, 763
Lsp1109I GCAGC 4 cut(s) 187, 293, 430, 759
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 2 cut(s) 733, 777
MalI GATC 6 cut(s) 51, 91, 267, 318, 696, 765
MboI GATC 6 cut(s) 49, 89, 265, 316, 694, 763
MboII GAAGA 6 cut(s) 24, 27, 260, 366, 664, 691
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 2 cut(s) 89, 265
MhlI GDGCHC 3 cut(s) 106, 430, 535
MluCI AATT 3 cut(s) 155, 164, 251
Mly113I GGCGCC 1 cut(s) 9
Mph1103I ATGCAT 1 cut(s) 174
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 2 cut(s) 370, 476
MunI CAATTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 370
MwoI GCNNNNNNNGC 3 cut(s) 299, 440, 516
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 1 cut(s) 277
NdeII GATC 6 cut(s) 49, 89, 265, 316, 694, 763
NlaIII CATG 3 cut(s) 172, 281, 635
NlaIV GGNNCC 5 cut(s) 10, 103, 104, 504, 701
NmuCI GTSAC 1 cut(s) 777
NsiI ATGCAT 1 cut(s) 174
NspV TTCGAA 1 cut(s) 548
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 4 cut(s) 202, 308, 445, 774
PluTI GGCGCC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 5 cut(s) 10, 103, 104, 504, 701
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 4 cut(s) 102, 103, 353, 613
PstI CTGCAG 1 cut(s) 777
PsuI RGATCY 2 cut(s) 89, 265
PvuII CAGCTG 1 cut(s) 665
RseI CAYNNNNRTG 1 cut(s) 584
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 201, 307, 444, 773
Sau3AI GATC 6 cut(s) 49, 89, 265, 316, 694, 763
Sau96I GGNCC 4 cut(s) 102, 103, 353, 613
ScrFI CCNGG 2 cut(s) 370, 476
SduI GDGCHC 3 cut(s) 106, 430, 535
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 773
SfoI GGCGCC 1 cut(s) 10
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 180, 748
SmoI CTYRAG 2 cut(s) 180, 748
Sse9I AATT 3 cut(s) 155, 164, 251
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 368, 474
StyI CCWWGG 2 cut(s) 277, 498
TaaI ACNGT 1 cut(s) 783
TaiI ACGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 548, 604
TasI AATT 3 cut(s) 155, 164, 251
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 85, 337, 415
TseFI GTSAC 1 cut(s) 777
TseI GCWGC 4 cut(s) 200, 306, 443, 772
Tsp45I GTSAC 1 cut(s) 777
TspDTI ATGAA 2 cut(s) 157, 627
TspRI CASTG 3 cut(s) 85, 337, 415
VpaK11BI GGWCC 1 cut(s) 613
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.