Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 31 - 178 | 2.2e-19 | gag-polypeptide of LTR copia-type |
| gag_pre-integrs | PF13976 | 390 - 451 | 1.3e-12 | GAG-pre-integrase domain |
| rve | PF00665 | 466 - 564 | 3.5e-13 | Integrase core domain |
| SH3_retrovirus | PF25597 | 638 - 699 | 1.1e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 838 - 1078 | 2.7e-66 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 663, 2189 |
| AarI | CACCTGC | 1 cut(s) | 3238 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1432, 3023 |
| AatII | GACGTC | 3 cut(s) | 1430, 1530, 2757 |
| Acc36I | ACCTGC | 1 cut(s) | 3238 |
| AccB1I | GGYRCC | 2 cut(s) | 833, 2981 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3399 |
| AccI | GTMKAC | 3 cut(s) | 260, 1376, 3459 |
| AccII | CGCG | 2 cut(s) | 3353, 3509 |
| AccIII | TCCGGA | 1 cut(s) | 1690 |
| AciI | CCGC | 4 cut(s) | 2312, 3353, 3509, 3650 |
| AcoI | YGGCCR | 4 cut(s) | 265, 405, 949, 1132 |
| AcsI | RAATTY | 2 cut(s) | 1877, 3290 |
| AcuI | CTGAAG | 3 cut(s) | 260, 2808, 3299 |
| AcyI | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| AflII | CTTAAG | 1 cut(s) | 3107 |
| AflIII | ACRYGT | 3 cut(s) | 1569, 3332, 3780 |
| AjiI | CACGTC | 5 cut(s) | 641, 2618, 3056, 3335, 3712 |
| AjnI | CCWGG | 1 cut(s) | 691 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2751, 2783 |
| Alw21I | GWGCWC | 2 cut(s) | 215, 3313 |
| Alw26I | GTCTC | 7 cut(s) | 1083, 1434, 1440, 2797, 3062, 3606, 3718 |
| Ama87I | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| Aor13HI | TCCGGA | 1 cut(s) | 1690 |
| ApaI | GGGCCC | 2 cut(s) | 2157, 3105 |
| ApeKI | GCWGC | 6 cut(s) | 4, 488, 575, 875, 3041, 3404 |
| ApoI | RAATTY | 2 cut(s) | 1877, 3290 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 806, 838 |
| AseI | ATTAAT | 1 cut(s) | 1446 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 501, 1148, 1794 |
| AspLEI | GCGC | 1 cut(s) | 515 |
| AsuC2I | CCSGG | 4 cut(s) | 431, 611, 2890, 2891 |
| AsuHPI | GGTGA | 5 cut(s) | 160, 323, 841, 2341, 3375 |
| AsuII | TTCGAA | 2 cut(s) | 964, 2294 |
| AvaI | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| AvaII | GGWCC | 6 cut(s) | 31, 228, 698, 722, 893, 2824 |
| AxyI | CCTNAGG | 1 cut(s) | 718 |
| BaeGI | GKGCMC | 2 cut(s) | 2157, 3105 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1200, 1200, 1233, 1233 |
| BalI | TGGCCA | 2 cut(s) | 407, 951 |
| BamHI | GGATCC | 2 cut(s) | 129, 3513 |
| BanI | GGYRCC | 2 cut(s) | 833, 2981 |
| BanII | GRGCYC | 3 cut(s) | 215, 2157, 3105 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 751, 783, 3311, 3343 |
| BauI | CACGAG | 2 cut(s) | 1212, 1653 |
| BbsI | GAAGAC | 3 cut(s) | 263, 2796, 3248 |
| Bbv12I | GWGCWC | 2 cut(s) | 215, 3313 |
| BbvI | GCAGC | 5 cut(s) | 475, 562, 862, 3053, 3391 |
| BceAI | ACGGC | 4 cut(s) | 252, 1147, 1818, 2887 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 815, 849, 1966, 2000 |
| BciT130I | CCWGG | 1 cut(s) | 693 |
| BclI | TGATCA | 2 cut(s) | 898, 3445 |
| BcnI | CCSGG | 4 cut(s) | 431, 611, 2890, 2891 |
| BcoDI | GTCTC | 7 cut(s) | 1083, 1434, 1440, 2797, 3062, 3606, 3718 |
| BfaI | CTAG | 4 cut(s) | 1257, 1284, 1488, 3468 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BfrI | CTTAAG | 1 cut(s) | 3107 |
| BfuAI | ACCTGC | 1 cut(s) | 3238 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BglII | AGATCT | 1 cut(s) | 3094 |
| BisI | GCNGC | 6 cut(s) | 5, 489, 576, 876, 3042, 3405 |
| BlpI | GCTNAGC | 3 cut(s) | 579, 1705, 3066 |
| BlsI | GCNGC | 6 cut(s) | 6, 490, 577, 877, 3043, 3406 |
| BmcAI | AGTACT | 1 cut(s) | 445 |
| Bme1390I | CCNGG | 5 cut(s) | 431, 611, 693, 2890, 2891 |
| Bme18I | GGWCC | 6 cut(s) | 31, 228, 698, 722, 893, 2824 |
| BmeT110I | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| BmgBI | CACGTC | 5 cut(s) | 641, 2618, 3056, 3335, 3712 |
| BmrFI | CCNGG | 5 cut(s) | 431, 611, 693, 2890, 2891 |
| BmrI | ACTGGG | 3 cut(s) | 1352, 2283, 3039 |
| BmuI | ACTGGG | 3 cut(s) | 1352, 2283, 3039 |
| BpiI | GAAGAC | 3 cut(s) | 263, 2796, 3248 |
| BpmI | CTGGAG | 4 cut(s) | 714, 804, 3557, 3594 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2358 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 579, 1705, 3066 |
| Bpu14I | TTCGAA | 2 cut(s) | 964, 2294 |
| BpuEI | CTTGAG | 2 cut(s) | 59, 849 |
| BpuMI | CCSGG | 4 cut(s) | 431, 611, 2890, 2891 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3689 |
| BsaHI | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| BsaWI | WCCGGW | 1 cut(s) | 1690 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1063, 1093, 2078, 2108 |
| Bse118I | RCCGGY | 2 cut(s) | 263, 3239 |
| Bse21I | CCTNAGG | 1 cut(s) | 718 |
| Bse3DI | GCAATG | 4 cut(s) | 321, 351, 2481, 3060 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3689 |
| BseAI | TCCGGA | 1 cut(s) | 1690 |
| BseBI | CCWGG | 1 cut(s) | 693 |
| BseGI | GGATG | 8 cut(s) | 175, 712, 1249, 1687, 2252, 2368, 3779, 3796 |
| BseJI | GATNNNNATC | 1 cut(s) | 3689 |
| BseMI | GCAATG | 4 cut(s) | 321, 351, 2481, 3060 |
| BseMII | CTCAG | 5 cut(s) | 269, 523, 593, 732, 3080 |
| BseRI | GAGGAG | 3 cut(s) | 2947, 3176, 3611 |
| BseSI | GKGCMC | 2 cut(s) | 2157, 3105 |
| BseX3I | CGGCCG | 1 cut(s) | 265 |
| BseXI | GCAGC | 5 cut(s) | 475, 562, 862, 3053, 3391 |
| BsgI | GTGCAG | 2 cut(s) | 441, 747 |
| Bsh1236I | CGCG | 2 cut(s) | 3353, 3509 |
| Bsh1285I | CGRYCG | 2 cut(s) | 268, 3244 |
| BshNI | GGYRCC | 2 cut(s) | 833, 2981 |
| BsiEI | CGRYCG | 2 cut(s) | 268, 3244 |
| BsiHKAI | GWGCWC | 2 cut(s) | 215, 3313 |
| BsiHKCI | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| BsiSI | CCGG | 7 cut(s) | 22, 264, 431, 610, 1691, 2890, 3240 |
| BslFI | GGGAC | 4 cut(s) | 17, 254, 854, 2250 |
| BsmAI | GTCTC | 7 cut(s) | 1083, 1434, 1440, 2797, 3062, 3606, 3718 |
| BsmBI | CGTCTC | 4 cut(s) | 1434, 1440, 3062, 3718 |
| BsmFI | GGGAC | 4 cut(s) | 17, 254, 854, 2250 |
| BsmI | GAATGC | 2 cut(s) | 1234, 3379 |
| BsoBI | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| Bsp119I | TTCGAA | 2 cut(s) | 964, 2294 |
| Bsp120I | GGGCCC | 2 cut(s) | 2153, 3101 |
| Bsp1286I | GDGCHC | 4 cut(s) | 215, 2157, 3105, 3313 |
| Bsp13I | TCCGGA | 1 cut(s) | 1690 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 579, 1705, 3066 |
| Bsp19I | CCATGG | 3 cut(s) | 144, 2343, 2773 |
| BspACI | CCGC | 4 cut(s) | 2312, 3353, 3509, 3650 |
| BspCNI | CTCAG | 5 cut(s) | 268, 522, 592, 731, 3079 |
| BspEI | TCCGGA | 1 cut(s) | 1690 |
| BspFNI | CGCG | 2 cut(s) | 3353, 3509 |
| BspHI | TCATGA | 1 cut(s) | 3259 |
| BspMI | ACCTGC | 1 cut(s) | 3238 |
| BspQI | GCTCTTC | 5 cut(s) | 507, 628, 827, 2727, 3318 |
| BspT104I | TTCGAA | 2 cut(s) | 964, 2294 |
| BspT107I | GGYRCC | 2 cut(s) | 833, 2981 |
| BspTI | CTTAAG | 1 cut(s) | 3107 |
| BsrDI | GCAATG | 4 cut(s) | 321, 351, 2481, 3060 |
| BsrFI | RCCGGY | 2 cut(s) | 263, 3239 |
| BssAI | RCCGGY | 2 cut(s) | 263, 3239 |
| BssNI | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| BssSI | CACGAG | 2 cut(s) | 1212, 1653 |
| BssT1I | CCWWGG | 6 cut(s) | 144, 754, 2343, 2773, 3118, 3555 |
| Bst2BI | CACGAG | 2 cut(s) | 1212, 1653 |
| Bst2UI | CCWGG | 1 cut(s) | 693 |
| BstACI | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| BstAFI | CTTAAG | 1 cut(s) | 3107 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2135 |
| BstBI | TTCGAA | 2 cut(s) | 964, 2294 |
| BstC8I | GCNNGC | 6 cut(s) | 1201, 1773, 2472, 2852, 3215, 3638 |
| BstDSI | CCRYGG | 4 cut(s) | 144, 631, 2343, 2773 |
| BstEII | GGTNACC | 1 cut(s) | 2347 |
| BstF5I | GGATG | 8 cut(s) | 175, 712, 1249, 1687, 2252, 2368, 3779, 3796 |
| BstFNI | CGCG | 2 cut(s) | 3353, 3509 |
| BstHHI | GCGC | 1 cut(s) | 515 |
| BstMAI | GTCTC | 7 cut(s) | 1083, 1434, 1440, 2797, 3062, 3606, 3718 |
| BstMCI | CGRYCG | 2 cut(s) | 268, 3244 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 122, 497, 2135, 2311, 2399, 2891, 2948, 3506 |
| BstNI | CCWGG | 1 cut(s) | 693 |
| BstNSI | RCATGY | 6 cut(s) | 1108, 1203, 1573, 1920, 3154, 3784 |
| BstPI | GGTNACC | 1 cut(s) | 2347 |
| BstSCI | CCNGG | 5 cut(s) | 429, 609, 691, 2888, 2889 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstSLI | GKGCMC | 2 cut(s) | 2157, 3105 |
| BstUI | CGCG | 2 cut(s) | 3353, 3509 |
| BstV1I | GCAGC | 5 cut(s) | 475, 562, 862, 3053, 3391 |
| BstV2I | GAAGAC | 3 cut(s) | 263, 2796, 3248 |
| BstX2I | RGATCY | 8 cut(s) | 129, 644, 1119, 2023, 2248, 3094, 3181, 3513 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2562, 3716 |
| BstYI | RGATCY | 8 cut(s) | 129, 644, 1119, 2023, 2248, 3094, 3181, 3513 |
| BstZI | CGGCCG | 1 cut(s) | 265 |
| Bsu36I | CCTNAGG | 1 cut(s) | 718 |
| BtgI | CCRYGG | 4 cut(s) | 144, 631, 2343, 2773 |
| BtgZI | GCGATG | 1 cut(s) | 716 |
| BtrI | CACGTC | 5 cut(s) | 641, 2618, 3056, 3335, 3712 |
| BtsCI | GGATG | 8 cut(s) | 175, 712, 1249, 1687, 2252, 2368, 3779, 3796 |
| BtsI | GCAGTG | 3 cut(s) | 2946, 3462, 3483 |
| BveI | ACCTGC | 1 cut(s) | 3238 |
| Cac8I | GCNNGC | 6 cut(s) | 1201, 1773, 2472, 2852, 3215, 3638 |
| CciI | TCATGA | 1 cut(s) | 3259 |
| CfoI | GCGC | 1 cut(s) | 515 |
| Cfr10I | RCCGGY | 2 cut(s) | 263, 3239 |
| Cfr9I | CCCGGG | 1 cut(s) | 2889 |
| CseI | GACGC | 5 cut(s) | 149, 531, 563, 600, 1764 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 181, 216 |
| DraI | TTTAAA | 3 cut(s) | 985, 1512, 1636 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1432, 3023 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1432, 3023 |
| EaeI | YGGCCR | 4 cut(s) | 265, 405, 949, 1132 |
| EagI | CGGCCG | 1 cut(s) | 265 |
| EciI | GGCGGA | 2 cut(s) | 2301, 3639 |
| Ecl136II | GAGCTC | 1 cut(s) | 213 |
| EclXI | CGGCCG | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 6 cut(s) | 144, 754, 2343, 2773, 3118, 3555 |
| Eco24I | GRGCYC | 3 cut(s) | 215, 2157, 3105 |
| Eco32I | GATATC | 1 cut(s) | 2012 |
| Eco47I | GGWCC | 6 cut(s) | 31, 228, 698, 722, 893, 2824 |
| Eco52I | CGGCCG | 1 cut(s) | 265 |
| Eco53kI | GAGCTC | 1 cut(s) | 213 |
| Eco57I | CTGAAG | 3 cut(s) | 260, 2808, 3299 |
| Eco81I | CCTNAGG | 1 cut(s) | 718 |
| Eco88I | CYCGRG | 3 cut(s) | 465, 2459, 2889 |
| Eco91I | GGTNACC | 1 cut(s) | 2347 |
| EcoICRI | GAGCTC | 1 cut(s) | 213 |
| EcoO109I | RGGNCCY | 4 cut(s) | 722, 2153, 2154, 3102 |
| EcoO65I | GGTNACC | 1 cut(s) | 2347 |
| EcoRII | CCWGG | 1 cut(s) | 691 |
| EcoRV | GATATC | 1 cut(s) | 2012 |
| EcoT14I | CCWWGG | 6 cut(s) | 144, 754, 2343, 2773, 3118, 3555 |
| EcoT22I | ATGCAT | 3 cut(s) | 1205, 1765, 3381 |
| EcoT38I | GRGCYC | 3 cut(s) | 215, 2157, 3105 |
| ErhI | CCWWGG | 6 cut(s) | 144, 754, 2343, 2773, 3118, 3555 |
| Esp3I | CGTCTC | 4 cut(s) | 1434, 1440, 3062, 3718 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 489, 521, 2604, 2636 |
| FaqI | GGGAC | 4 cut(s) | 17, 254, 854, 2250 |
| FauI | CCCGC | 1 cut(s) | 3502 |
| FbaI | TGATCA | 2 cut(s) | 898, 3445 |
| FblI | GTMKAC | 3 cut(s) | 260, 1376, 3459 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 489, 576, 876, 3042, 3405 |
| FokI | GGATG | 8 cut(s) | 162, 699, 1236, 1674, 2239, 2375, 3786, 3803 |
| FriOI | GRGCYC | 3 cut(s) | 215, 2157, 3105 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 489, 576, 876, 3042, 3405 |
| FspBI | CTAG | 4 cut(s) | 1257, 1284, 1488, 3468 |
| GlaI | GCGC | 1 cut(s) | 514 |
| GluI | GCNGC | 6 cut(s) | 5, 489, 576, 876, 3042, 3405 |
| GsuI | CTGGAG | 4 cut(s) | 714, 804, 3557, 3594 |
| HapII | CCGG | 7 cut(s) | 22, 264, 431, 610, 1691, 2890, 3240 |
| HgaI | GACGC | 5 cut(s) | 149, 531, 563, 600, 1764 |
| HhaI | GCGC | 1 cut(s) | 515 |
| Hin1I | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| Hin6I | GCGC | 1 cut(s) | 513 |
| HinP1I | GCGC | 1 cut(s) | 513 |
| HincII | GTYRAC | 2 cut(s) | 1315, 2747 |
| HindII | GTYRAC | 2 cut(s) | 1315, 2747 |
| HindIII | AAGCTT | 1 cut(s) | 2852 |
| HpaI | GTTAAC | 1 cut(s) | 1315 |
| HpaII | CCGG | 7 cut(s) | 22, 264, 431, 610, 1691, 2890, 3240 |
| HphI | GGTGA | 5 cut(s) | 160, 323, 841, 2341, 3375 |
| Hpy99I | CGWCG | 7 cut(s) | 525, 557, 2376, 2862, 3195, 3249, 3530 |
| HpyAV | CCTTC | 7 cut(s) | 79, 558, 777, 2181, 2642, 3257, 3332 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 122, 497, 2135, 2311, 2399, 2891, 2948, 3506 |
| Hsp92I | GRCGYC | 5 cut(s) | 141, 523, 1427, 1527, 2754 |
| HspAI | GCGC | 1 cut(s) | 513 |
| Kpn2I | TCCGGA | 1 cut(s) | 1690 |
| Ksp22I | TGATCA | 2 cut(s) | 898, 3445 |
| KspAI | GTTAAC | 1 cut(s) | 1315 |
| LguI | GCTCTTC | 5 cut(s) | 507, 628, 827, 2727, 3318 |
| LmnI | GCTCC | 5 cut(s) | 18, 218, 285, 740, 3613 |
| Lsp1109I | GCAGC | 5 cut(s) | 475, 562, 862, 3053, 3391 |
| MaeI | CTAG | 4 cut(s) | 1257, 1284, 1488, 3468 |
| MflI | RGATCY | 8 cut(s) | 129, 644, 1119, 2023, 2248, 3094, 3181, 3513 |
| MhlI | GDGCHC | 4 cut(s) | 215, 2157, 3105, 3313 |
| MlsI | TGGCCA | 2 cut(s) | 407, 951 |
| MluNI | TGGCCA | 2 cut(s) | 407, 951 |
| MlyI | GAGTC | 5 cut(s) | 759, 1360, 2680, 2948, 3608 |
| MmeI | TCCRAC | 4 cut(s) | 157, 576, 762, 2524 |
| Mox20I | TGGCCA | 2 cut(s) | 407, 951 |
| Mph1103I | ATGCAT | 3 cut(s) | 1205, 1765, 3381 |
| MroI | TCCGGA | 1 cut(s) | 1690 |
| MroXI | GAANNNNTTC | 3 cut(s) | 501, 1148, 1794 |
| MscI | TGGCCA | 2 cut(s) | 407, 951 |
| MslI | CAYNNNNRTG | 7 cut(s) | 149, 309, 1416, 2544, 3200, 3447, 3843 |
| Msp20I | TGGCCA | 2 cut(s) | 407, 951 |
| MspCI | CTTAAG | 1 cut(s) | 3107 |
| MspI | CCGG | 7 cut(s) | 22, 264, 431, 610, 1691, 2890, 3240 |
| MspR9I | CCNGG | 5 cut(s) | 431, 611, 693, 2890, 2891 |
| Mva1269I | GAATGC | 2 cut(s) | 1234, 3379 |
| MvaI | CCWGG | 1 cut(s) | 693 |
| MvnI | CGCG | 2 cut(s) | 3353, 3509 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 122, 497, 2135, 2311, 2399, 2891, 2948, 3506 |
| NciI | CCSGG | 4 cut(s) | 431, 611, 2890, 2891 |
| NcoI | CCATGG | 3 cut(s) | 144, 2343, 2773 |
| NsiI | ATGCAT | 3 cut(s) | 1205, 1765, 3381 |
| NspI | RCATGY | 6 cut(s) | 1108, 1203, 1573, 1920, 3154, 3784 |
| NspV | TTCGAA | 2 cut(s) | 964, 2294 |
| PaeI | GCATGC | 1 cut(s) | 1203 |
| PaeR7I | CTCGAG | 1 cut(s) | 465 |
| PagI | TCATGA | 1 cut(s) | 3259 |
| PaqCI | CACCTGC | 1 cut(s) | 3238 |
| PciI | ACATGT | 2 cut(s) | 1569, 3780 |
| PciSI | GCTCTTC | 5 cut(s) | 507, 628, 827, 2727, 3318 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2578, 3421 |
| PctI | GAATGC | 2 cut(s) | 1234, 3379 |
| PdmI | GAANNNNTTC | 3 cut(s) | 501, 1148, 1794 |
| PfeI | GAWTC | 5 cut(s) | 251, 827, 1452, 1850, 2368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3399 |
| PkrI | GCNGC | 6 cut(s) | 6, 490, 577, 877, 3043, 3406 |
| PleI | GAGTC | 5 cut(s) | 758, 1359, 2680, 2948, 3607 |
| PpsI | GAGTC | 5 cut(s) | 758, 1359, 2680, 2948, 3607 |
| PpuMI | RGGWCCY | 1 cut(s) | 722 |
| PscI | ACATGT | 2 cut(s) | 1569, 3780 |
| PshBI | ATTAAT | 1 cut(s) | 1446 |
| PsiI | TTATAA | 2 cut(s) | 663, 2189 |
| Psp124BI | GAGCTC | 1 cut(s) | 215 |
| Psp5II | RGGWCCY | 1 cut(s) | 722 |
| Psp6I | CCWGG | 1 cut(s) | 691 |
| PspEI | GGTNACC | 1 cut(s) | 2347 |
| PspGI | CCWGG | 1 cut(s) | 691 |
| PspOMI | GGGCCC | 2 cut(s) | 2153, 3101 |
| PspPPI | RGGWCCY | 1 cut(s) | 722 |
| PsuI | RGATCY | 8 cut(s) | 129, 644, 1119, 2023, 2248, 3094, 3181, 3513 |
| RseI | CAYNNNNRTG | 7 cut(s) | 149, 309, 1416, 2544, 3200, 3447, 3843 |
| SacI | GAGCTC | 1 cut(s) | 215 |
| SapI | GCTCTTC | 5 cut(s) | 507, 628, 827, 2727, 3318 |
| SatI | GCNGC | 6 cut(s) | 5, 489, 576, 876, 3042, 3405 |
| ScaI | AGTACT | 1 cut(s) | 445 |
| SchI | GAGTC | 5 cut(s) | 759, 1360, 2680, 2948, 3608 |
| ScrFI | CCNGG | 5 cut(s) | 431, 611, 693, 2890, 2891 |
| SduI | GDGCHC | 4 cut(s) | 215, 2157, 3105, 3313 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| Sfr274I | CTCGAG | 1 cut(s) | 465 |
| SfuI | TTCGAA | 2 cut(s) | 964, 2294 |
| SinI | GGWCC | 6 cut(s) | 31, 228, 698, 722, 893, 2824 |
| SlaI | CTCGAG | 1 cut(s) | 465 |
| SmaI | CCCGGG | 1 cut(s) | 2891 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 149, 309, 1416, 2544, 3200, 3447, 3843 |
| SmlI | CTYRAG | 4 cut(s) | 74, 465, 864, 3107 |
| SmoI | CTYRAG | 4 cut(s) | 74, 465, 864, 3107 |
| SphI | GCATGC | 1 cut(s) | 1203 |
| SsiI | CCGC | 4 cut(s) | 2312, 3353, 3509, 3650 |
| SspI | AATATT | 1 cut(s) | 1460 |
| SspMI | CTAG | 4 cut(s) | 1257, 1284, 1488, 3468 |
| SstI | GAGCTC | 1 cut(s) | 215 |
| StyD4I | CCNGG | 5 cut(s) | 429, 609, 691, 2888, 2889 |
| StyI | CCWWGG | 6 cut(s) | 144, 754, 2343, 2773, 3118, 3555 |
| TaqII | GACCGA | 1 cut(s) | 3221 |
| TatI | WGTACW | 1 cut(s) | 443 |
| TfiI | GAWTC | 5 cut(s) | 251, 827, 1452, 1850, 2368 |
| TseI | GCWGC | 6 cut(s) | 4, 488, 575, 875, 3041, 3404 |
| TspGWI | ACGGA | 4 cut(s) | 924, 1422, 2704, 3179 |
| TspMI | CCCGGG | 1 cut(s) | 2889 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3399 |
| Vha464I | CTTAAG | 1 cut(s) | 3107 |
| VpaK11BI | GGWCC | 6 cut(s) | 31, 228, 698, 722, 893, 2824 |
| VspI | ATTAAT | 1 cut(s) | 1446 |
| XapI | RAATTY | 2 cut(s) | 1877, 3290 |
| XceI | RCATGY | 6 cut(s) | 1108, 1203, 1573, 1920, 3154, 3784 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1142, 3175 |
| XhoI | CTCGAG | 1 cut(s) | 465 |
| XmaI | CCCGGG | 1 cut(s) | 2889 |
| XmiI | GTMKAC | 3 cut(s) | 260, 1376, 3459 |
| XmnI | GAANNNNTTC | 3 cut(s) | 501, 1148, 1794 |
| XspI | CTAG | 4 cut(s) | 1257, 1284, 1488, 3468 |
| ZraI | GACGTC | 3 cut(s) | 1428, 1528, 2755 |
| ZrmI | AGTACT | 1 cut(s) | 445 |
| Zsp2I | ATGCAT | 3 cut(s) | 1205, 1765, 3381 |