Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000889

Physical Location & Seq

Genomic Coordinates Forward (+)

37721450 .. 37725632

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1278000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTTTCTGCTACCCCAATCTCCTCTACCTCCTCTGATTCATCTTCCTCTACCATGACTGCCCCTACTATCTCCCTTCCCACCACCTTCAATATCTCTCATACGATCAACACTCTCATGGACCGCAACAATTATCTTAGTTGGCGATCTCAATTTCAGGATATTCTTGAAATTCATGGTATGGAAGATGTCGTGACTATCAATTCTAAACCACTGAAGAAGCACAATGATGGCTTTGTCAATCCCCATTATTCTAGGGACAAACTCATTTTCAGTTGGATCAAGGCTACCTACATATCCTCTATCCGAACTATTCTAATCCCTTGCACCTATGCTTATGATGTTTGGACTCTCTTGGAAAATCGTCTGTCACCTCTCTTCAAGACTCACATCCGCACTCTTCGTGACCAACTTCGCACTCTTAAGAAAGATTCGGAGAAGCCCATGTCTGACTATCTGGTGCATGCCAAAAGCCTTGCAGATTCTCTTAATACTGCTGGTTCCAGTATCAGTGAAGATGACCTCATTGAATGCCTTTTAGATGGCATTGGTCCTGAATACAAGGAGTTTACCACCTTCATTGATACATTATATGCCACCTTTGCTAGTCAGAAGTTGGGGGATCTTAATTATTTTCTTGGCATAGAGGTCATCCGCAATGGCAGCCACCTGTGTCTCTCTCAATCTCGTTATGCTTCTGATTTGTTAAAAAAATTTAAGATGGATCTTTGCAAGCCAAGTCCCACTCCATTCCTCTCATCCACACGCTTATCTGCACATGATGGTGATCCACTTTCTAACCCAGAGACATATCGTAGTATGGTTGGTGGGCTCCAATATCTTACTCTCTCACGCCTCGACATTACCTATGCTGTCAATCAAGTTTGTCAATACATGCACAATCTGAAAACCACTCATCTTCAAGCAGTCAAGCGCATTTATCGCTATATCAAGGGCACCGTTGCACATGGTCTCCTCTTCCGTTCCTCAACGGACTTCTCTCTTCGTGGATTTTTCGATGCTGATTGGGCTGGTTTTGTTGATGATCGTCGATCCACTAGTGGTGCGTGCATTTTCCTTAGCCTGAACCTTCTGACTTGGACTGCTAAAAAGCAATCCACGGTGTCTCGCTCAAGCTCTAAAGCTGAATATCACGCTCTTGCCACCACAGCAGCAGAACTACGGTGGTTCTGCTATTTGTTTCGTGAGATTGGTCTTCCTCTTTACACTCCACCATGTATTTACGTCGATAATGTCTCTGCTCTTCAAATGGCTACAAATCCGGTCTTCCATGCTCGCACACGGTACATAGAAATTGACTACCATTTTGTTCGTGAGTTACTTGCTCAGGGGGTCCTTGCCACCCCGGCATATGCCTTCACAACATCAAATTGCCGATGTCTTCACCAAAGGACTATCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

475

Amino Acids

53.68

Weight (kDa)

8.65

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	108 - 195	1e-09	gag-polypeptide of LTR copia-type
RVT_2	PF07727	186 - 252	1e-06	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00820
fragaria_vesca	FvH4_2g11011 FvH4_2g23061 FvH4_3g33302 FvH4_4g01631 FvH4_5g39270 FvH4_6g33903
malus_domestica	MD00G1024600.v1.1 MD00G1084700.v1.1 MD02G1303700.v1.1 MD03G1056000.v1.1 MD04G1231400.v1.1 MD05G1050400.v1.1 MD09G1100700.v1.1 MD09G1214100.v1.1 MD11G1146000.v1.1 MD11G1197500.v1.1 MD12G1020900.v1.1 MD12G1052500.v1.1 MD12G1175300.v1.1 MD12G1185900.v1.1 MD13G1050200.v1.1 MD13G1157100.v1.1 MD14G1109000.v1.1 MD14G1189500.v1.1 MD14G1225200.v1.1 MD16G1247000.v1.1 MD16G1278000.v1.1 MD17G1115400.v1.1 MD17G1248200.v1.1
pyrus_communis	pycom02g18580 pycom03g02970 pycom03g07840 pycom05g12390 pycom05g14310 pycom07g14010 pycom07g17390 pycom08g03700 pycom08g03730 pycom12g14660 pycom14g19040 pycom15g04630 pycom15g35310 pycom17g24840 pycom520g01050
rosa_chinensis	RchiOBHm_Chr2g0093581 RchiOBHm_Chr2g0139021 RchiOBHm_Chr2g0153961 RchiOBHm_Chr3g0454851 RchiOBHm_Chr3g0479941 RchiOBHm_Chr5g0074721 RchiOBHm_Chr7g0182831 RchiOBHm_Chr7g0210861 RchiOBHm_Chr7g0238261
rosa_roxburghii	Rroxscaffold_1G00010990 Rroxscaffold_1G00042070 Rroxscaffold_2G00082160 Rroxscaffold_3G00266700
rosa_wichuraiana	Rw1G002370 Rw2G026000 Rw3G024450 Rw4G009390 Rw5G000900 Rw5G015970 Rw6G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	956
AciI	CCGC	3 cut(s)	124, 394, 655
AclWI	GGATC	5 cut(s)	287, 630, 732, 782, 1047
AcsI	RAATTY	2 cut(s)	171, 713
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	1307
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	6 cut(s)	91, 170, 382, 530, 923, 1268
AhlI	ACTAGT	1 cut(s)	1058
AluBI	AGCT	2 cut(s)	1137, 1145
AluI	AGCT	2 cut(s)	1137, 1145
Alw26I	GTCTC	5 cut(s)	680, 800, 977, 1131, 1261
AlwI	GGATC	5 cut(s)	287, 630, 732, 782, 1047
ApeKI	GCWGC	2 cut(s)	663, 1172
ApoI	RAATTY	2 cut(s)	171, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	1310, 1342
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	3 cut(s)	121, 551, 1354
AsuC2I	CCSGG	1 cut(s)	1367
AsuHPI	GGTGA	3 cut(s)	363, 797, 1397
AvaII	GGWCC	3 cut(s)	121, 551, 1354
BaeGI	GKGCMC	1 cut(s)	959
BanI	GGYRCC	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	834
BauI	CACGAG	1 cut(s)	1420
BbsI	GAAGAC	3 cut(s)	1208, 1279, 1394
BbvI	GCAGC	2 cut(s)	675, 1184
BccI	CCATC	4 cut(s)	224, 536, 715, 776
BcnI	CCSGG	1 cut(s)	1367
BcoDI	GTCTC	5 cut(s)	680, 800, 977, 1131, 1261
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	3 cut(s)	255, 606, 1059
BfrI	CTTAAG	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	1367
BisI	GCNGC	2 cut(s)	664, 1173
BlsI	GCNGC	2 cut(s)	665, 1174
Bme1390I	CCNGG	1 cut(s)	1367
Bme18I	GGWCC	3 cut(s)	121, 551, 1354
BmgT120I	GGNCC	3 cut(s)	121, 551, 1354
BmiI	GGNNCC	4 cut(s)	502, 833, 958, 1355
BmrFI	CCNGG	1 cut(s)	1367
BmsI	GCATC	1 cut(s)	1009
BpiI	GAAGAC	3 cut(s)	1208, 1279, 1394
Bpu10I	CCTNAGC	2 cut(s)	1079, 1347
BpuEI	CTTGAG	1 cut(s)	1117
BpuMI	CCSGG	1 cut(s)	1367
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	2 cut(s)	1119, 1365
BsaWI	WCCGGW	1 cut(s)	1282
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bse1I	ACTGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	664
Bse8I	GATNNNNATC	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	1119, 1365
BseGI	GGATG	3 cut(s)	390, 651, 758
BseJI	GATNNNNATC	1 cut(s)	786
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	1361
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	3 cut(s)	13, 22, 965
BseSI	GKGCMC	1 cut(s)	959
BseXI	GCAGC	2 cut(s)	675, 1184
BsgI	GTGCAG	1 cut(s)	759
BshNI	GGYRCC	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	1283, 1367
BslFI	GGGAC	2 cut(s)	272, 726
BsmAI	GTCTC	5 cut(s)	680, 800, 977, 1131, 1261
BsmFI	GGGAC	2 cut(s)	272, 726
BsmI	GAATGC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	977
Bsp1286I	GDGCHC	2 cut(s)	834, 959
Bsp143I	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
BspACI	CCGC	3 cut(s)	124, 394, 655
BspCNI	CTCAG	1 cut(s)	1360
BspLI	GGNNCC	4 cut(s)	502, 833, 958, 1355
BspPI	GGATC	5 cut(s)	287, 630, 732, 782, 1047
BspQI	GCTCTTC	1 cut(s)	1269
BspT107I	GGYRCC	1 cut(s)	956
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	2 cut(s)	1119, 1365
BssMI	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
BssSI	CACGAG	1 cut(s)	1420
Bst2BI	CACGAG	1 cut(s)	1420
Bst4CI	ACNGT	4 cut(s)	961, 1123, 1185, 1305
Bst6I	CTCTTC	5 cut(s)	383, 405, 983, 1008, 1269
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	465, 734, 1069, 1297
BstDEI	CTNAG	3 cut(s)	137, 1079, 1347
BstDSI	CCRYGG	1 cut(s)	1119
BstF5I	GGATG	3 cut(s)	390, 651, 758
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	8 cut(s)	108, 149, 282, 625, 727, 790, 1048, 1055
BstMAI	GTCTC	5 cut(s)	680, 800, 977, 1131, 1261
BstMBI	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
BstMWI	GCNNNNNNNGC	6 cut(s)	602, 663, 942, 1028, 1169, 1367
BstNSI	RCATGY	2 cut(s)	467, 898
BstSCI	CCNGG	1 cut(s)	1365
BstSLI	GKGCMC	1 cut(s)	959
BstV1I	GCAGC	2 cut(s)	675, 1184
BstV2I	GAAGAC	3 cut(s)	1208, 1279, 1394
BstX2I	RGATCY	2 cut(s)	622, 724
BstYI	RGATCY	2 cut(s)	622, 724
BtgI	CCRYGG	1 cut(s)	1119
BtsCI	GGATG	3 cut(s)	390, 651, 758
BtsIMutI	CAGTG	2 cut(s)	212, 517
Cac8I	GCNNGC	4 cut(s)	465, 734, 1069, 1297
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	3 cut(s)	121, 551, 1354
Csp6I	GTAC	1 cut(s)	1306
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviQI	GTAC	1 cut(s)	1306
DdeI	CTNAG	3 cut(s)	137, 1079, 1347
DpnI	GATC	8 cut(s)	107, 148, 281, 624, 726, 789, 1047, 1054
DpnII	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
Eam1104I	CTCTTC	5 cut(s)	383, 405, 983, 1008, 1269
EarI	CTCTTC	5 cut(s)	383, 405, 983, 1008, 1269
Eco24I	GRGCYC	1 cut(s)	834
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	3 cut(s)	121, 551, 1354
Eco57I	CTGAAG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	1354
EcoT38I	GRGCYC	1 cut(s)	834
FaqI	GGGAC	2 cut(s)	272, 726
FauNDI	CATATG	1 cut(s)	1372
Fnu4HI	GCNGC	2 cut(s)	664, 1173
FokI	GGATG	3 cut(s)	377, 638, 745
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	2 cut(s)	664, 1173
FspBI	CTAG	3 cut(s)	255, 606, 1059
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	2 cut(s)	664, 1173
HapII	CCGG	2 cut(s)	1283, 1367
HhaI	GCGC	1 cut(s)	936
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HinfI	GANTC	5 cut(s)	38, 349, 385, 431, 482
HpaII	CCGG	2 cut(s)	1283, 1367
HphI	GGTGA	3 cut(s)	363, 797, 1397
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	8 cut(s)	37, 308, 436, 451, 612, 700, 906, 1095
Hpy188III	TCNNGA	9 cut(s)	158, 167, 193, 382, 404, 554, 1205, 1334, 1422
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	2 cut(s)	1053, 1250
HpyAV	CCTTC	5 cut(s)	86, 97, 586, 1100, 1387
HpyCH4III	ACNGT	4 cut(s)	961, 1123, 1185, 1305
HpyCH4IV	ACGT	1 cut(s)	1245
HpyCH4V	TGCA	8 cut(s)	327, 463, 479, 732, 776, 898, 965, 1071
HpyF10VI	GCNNNNNNNGC	6 cut(s)	602, 663, 942, 1028, 1169, 1367
HpyF3I	CTNAG	3 cut(s)	137, 1079, 1347
HpySE526I	ACGT	1 cut(s)	1245
HspAI	GCGC	1 cut(s)	934
Kzo9I	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
LguI	GCTCTTC	1 cut(s)	1269
LmnI	GCTCC	1 cut(s)	837
Lsp1109I	GCAGC	2 cut(s)	675, 1184
LweI	GCATC	1 cut(s)	1009
MaeI	CTAG	3 cut(s)	255, 606, 1059
MaeII	ACGT	1 cut(s)	1245
MaeIII	GTNAC	4 cut(s)	193, 369, 404, 1338
MalI	GATC	8 cut(s)	107, 148, 281, 624, 726, 789, 1047, 1054
MboI	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
MflI	RGATCY	2 cut(s)	622, 724
MhlI	GDGCHC	2 cut(s)	834, 959
MluCI	AATT	8 cut(s)	130, 152, 171, 202, 628, 713, 1314, 1390
MlyI	GAGTC	2 cut(s)	343, 379
MmeI	TCCRAC	1 cut(s)	257
MseI	TTAA	5 cut(s)	423, 489, 627, 707, 717
MslI	CAYNNNNRTG	3 cut(s)	116, 228, 783
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	2 cut(s)	1283, 1367
MspR9I	CCNGG	1 cut(s)	1367
Mva1269I	GAATGC	1 cut(s)	536
MwoI	GCNNNNNNNGC	6 cut(s)	602, 663, 942, 1028, 1169, 1367
NciI	CCSGG	1 cut(s)	1367
NdeI	CATATG	1 cut(s)	1372
NdeII	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
NlaIV	GGNNCC	4 cut(s)	502, 833, 958, 1355
NmuCI	GTSAC	3 cut(s)	193, 369, 404
NspI	RCATGY	2 cut(s)	467, 898
PaeI	GCATGC	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	1269
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	3 cut(s)	38, 431, 482
PkrI	GCNGC	2 cut(s)	665, 1174
PleI	GAGTC	2 cut(s)	343, 379
PpsI	GAGTC	2 cut(s)	343, 379
PpuMI	RGGWCCY	1 cut(s)	1354
Psp5II	RGGWCCY	1 cut(s)	1354
PspN4I	GGNNCC	4 cut(s)	502, 833, 958, 1355
PspPI	GGNCC	3 cut(s)	121, 551, 1354
PspPPI	RGGWCCY	1 cut(s)	1354
PsuI	RGATCY	2 cut(s)	622, 724
RsaI	GTAC	1 cut(s)	1307
RsaNI	GTAC	1 cut(s)	1306
RseI	CAYNNNNRTG	3 cut(s)	116, 228, 783
SapI	GCTCTTC	1 cut(s)	1269
SaqAI	TTAA	5 cut(s)	423, 489, 627, 707, 717
SatI	GCNGC	2 cut(s)	664, 1173
Sau3AI	GATC	8 cut(s)	105, 146, 279, 622, 724, 787, 1045, 1052
Sau96I	GGNCC	3 cut(s)	121, 551, 1354
SchI	GAGTC	2 cut(s)	343, 379
ScrFI	CCNGG	1 cut(s)	1367
SduI	GDGCHC	2 cut(s)	834, 959
SfaNI	GCATC	1 cut(s)	1009
SinI	GGWCC	3 cut(s)	121, 551, 1354
SmiMI	CAYNNNNRTG	3 cut(s)	116, 228, 783
SmlI	CTYRAG	2 cut(s)	422, 1132
SmoI	CTYRAG	2 cut(s)	422, 1132
SpeI	ACTAGT	1 cut(s)	1058
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	8 cut(s)	130, 152, 171, 202, 628, 713, 1314, 1390
SsiI	CCGC	3 cut(s)	124, 394, 655
SspMI	CTAG	3 cut(s)	255, 606, 1059
StyD4I	CCNGG	1 cut(s)	1365
TaaI	ACNGT	4 cut(s)	961, 1123, 1185, 1305
TaiI	ACGT	1 cut(s)	1248
TaqI	TCGA	4 cut(s)	858, 1017, 1051, 1248
TasI	AATT	8 cut(s)	130, 152, 171, 202, 628, 713, 1314, 1390
TfiI	GAWTC	3 cut(s)	38, 431, 482
Tru1I	TTAA	5 cut(s)	423, 489, 627, 707, 717
Tru9I	TTAA	5 cut(s)	423, 489, 627, 707, 717
TscAI	CASTG	2 cut(s)	219, 517
TseFI	GTSAC	3 cut(s)	193, 369, 404
TseI	GCWGC	2 cut(s)	663, 1172
Tsp45I	GTSAC	3 cut(s)	193, 369, 404
TspDTI	ATGAA	3 cut(s)	30, 164, 568
TspGWI	ACGGA	2 cut(s)	971, 1007
TspRI	CASTG	2 cut(s)	219, 517
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	3 cut(s)	121, 551, 1354
XapI	RAATTY	2 cut(s)	171, 713
XceI	RCATGY	2 cut(s)	467, 898
XspI	CTAG	3 cut(s)	255, 606, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.