Rw5G000900

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000889
Physical Location & Seq
Forward (+)
683034 .. 683927
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000900.1

Sequence Viewer

Length: 834 bp
ATGAAAGATTTGGGTCCATTACACTATTTCTTGGGCATTAAGGCTGTACGGTCCTCTCATGGCCTTGCATTAACTCAGACGAAGTACACTTTAGATCTTCTACACCGCACCAACATGACAGATGCTAAACCTGTTTCAACTCCAGCAGCTACTGGCAAACGTTTGAGTCTCACCGATGGCACTCCTCTTCATGATGGTTCCCAATATCGGAGTGTTGTATGCCAATTTCTGCATTCTCCAACAAATGTCCATTGGGTGGCTGTCAAACGGATTCTTCGTTATCTCAAACACACACCTACCTATGGCTTGTTCTACACCCCAAGCAACTTCAAATTGACAGGTTATAGTGATTCTGATTATGCCGGGGATCCAGACACAAGAATCTCAACAGGTGGCACTTGCATCTACTTAGGTACAAACCTCATTTCATGGAGTTCTAAAAAGCAAAGTGGAGTTTCTCGTTCTAGCACTGAAGCAGAGTATCGTCAATTGGCCTACACTGCTGCACATATTTCTTGGTTTCGGACTCTATTTCTGGACCTATGCATTCCTCTCCAGTCCCCCACCCTATGGTGTGACAACATTAGTGCCATCTCTCTTGCTTCCAACCCGGTTTTCCATACAAGAACAAGACATGTTGAAGTTGATTATCATTACATTAGGGAAAAGGTTGTTCGCAAGGAAATTCAAGTTGCCTATATATGCTCCCAAGATCAACTCGTAGATATCTTCACCAAGGGTCTGAGTTCATATCGCTTCCACTATCTTCTAACCAAGCTTCTTGTCCGTGCCCGGCCCATCAGCTTGCGGGGGGGGGGGGGGGATAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

277

Amino Acids

31.22

Weight (kDa)

9.55

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 256, 570
AciI CCGC 2 cut(s) 106, 808
AclI AACGTT 1 cut(s) 160
AclWI GGATC 2 cut(s) 362, 375
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 3 cut(s) 48, 86, 415
AfiI CCNNNNNNNGG 4 cut(s) 207, 256, 302, 570
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 4 cut(s) 138, 331, 641, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 599, 631
AluBI AGCT 3 cut(s) 149, 778, 804
AluI AGCT 3 cut(s) 149, 778, 804
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 362, 375
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 3 cut(s) 61, 492, 794
ApeKI GCWGC 2 cut(s) 146, 503
ApoI RAATTY 1 cut(s) 684
AspS9I GGNCC 4 cut(s) 14, 51, 538, 795
AsuC2I CCSGG 3 cut(s) 364, 611, 793
AsuHPI GGTGA 2 cut(s) 163, 724
AvaII GGWCC 3 cut(s) 14, 51, 538
BaeGI GKGCMC 1 cut(s) 793
BamHI GGATCC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 158, 490
BccI CCATC 4 cut(s) 170, 188, 599, 806
BcnI CCSGG 3 cut(s) 364, 611, 793
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 94
BisI GCNGC 2 cut(s) 147, 504
BlsI GCNGC 2 cut(s) 148, 505
Bme1390I CCNGG 3 cut(s) 364, 611, 793
Bme18I GGWCC 3 cut(s) 14, 51, 538
BmgT120I GGNCC 4 cut(s) 14, 51, 538, 795
BmiI GGNNCC 3 cut(s) 15, 199, 369
BmrFI CCNGG 3 cut(s) 364, 611, 793
BmsI GCATC 2 cut(s) 112, 411
BpmI CTGGAG 2 cut(s) 126, 539
BpuMI CCSGG 3 cut(s) 364, 611, 793
BsaJI CCNNGG 2 cut(s) 363, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 256, 302, 570
Bse1I ACTGG 2 cut(s) 157, 556
BseDI CCNNGG 2 cut(s) 363, 735
BseLI CCNNNNNNNGG 4 cut(s) 207, 256, 302, 570
BseMII CTCAG 2 cut(s) 89, 734
BseNI ACTGG 2 cut(s) 157, 556
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 2 cut(s) 158, 490
BsgI GTGCAG 1 cut(s) 489
BshFI GGCC 3 cut(s) 63, 494, 796
BsiSI CCGG 3 cut(s) 363, 611, 793
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 4 cut(s) 207, 256, 302, 570
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 544
BsmI GAATGC 2 cut(s) 232, 546
BsnI GGCC 3 cut(s) 63, 494, 796
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 3 cut(s) 94, 367, 712
BspACI CCGC 2 cut(s) 106, 808
BspANI GGCC 3 cut(s) 63, 494, 796
BspCNI CTCAG 2 cut(s) 88, 735
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 15, 199, 369
BspPI GGATC 2 cut(s) 362, 375
BsrI ACTGG 2 cut(s) 157, 556
BssECI CCNNGG 2 cut(s) 363, 735
BssMI GATC 3 cut(s) 94, 367, 712
BssT1I CCWWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 806
BstDEI CTNAG 3 cut(s) 75, 409, 743
BstKTI GATC 3 cut(s) 97, 370, 715
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 94, 367, 712
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 3 cut(s) 362, 609, 791
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 158, 490
BstX2I RGATCY 2 cut(s) 94, 367
BstYI RGATCY 2 cut(s) 94, 367
BsuRI GGCC 3 cut(s) 63, 494, 796
BtsI GCAGTG 1 cut(s) 498
BtsIMutI CAGTG 2 cut(s) 468, 498
Cac8I GCNNGC 1 cut(s) 806
CaiI CAGNNNCTG 1 cut(s) 152
CciI TCATGA 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 14, 51, 538, 795
Csp6I GTAC 3 cut(s) 47, 85, 414
CviAII CATG 5 cut(s) 59, 115, 191, 429, 635
CviJI RGCY 9 cut(s) 44, 63, 149, 260, 306, 494, 778, 796, 804
CviKI_1 RGCY 9 cut(s) 44, 63, 149, 260, 306, 494, 778, 796, 804
CviQI GTAC 3 cut(s) 47, 85, 414
DdeI CTNAG 3 cut(s) 75, 409, 743
DpnI GATC 3 cut(s) 96, 369, 714
DpnII GATC 3 cut(s) 94, 367, 712
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 735
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 3 cut(s) 14, 51, 538
Eco57I CTGAAG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 5 cut(s) 62, 118, 194, 432, 638
FaqI GGGAC 1 cut(s) 544
FatI CATG 5 cut(s) 58, 114, 190, 428, 634
FauI CCCGC 1 cut(s) 801
Fnu4HI GCNGC 2 cut(s) 147, 504
Fsp4HI GCNGC 2 cut(s) 147, 504
FspBI CTAG 1 cut(s) 465
GluI GCNGC 2 cut(s) 147, 504
GsuI CTGGAG 2 cut(s) 126, 539
HaeIII GGCC 3 cut(s) 63, 494, 796
HapII CCGG 3 cut(s) 363, 611, 793
Hin1II CATG 5 cut(s) 62, 118, 194, 432, 638
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 5 cut(s) 166, 271, 350, 381, 526
HpaII CCGG 3 cut(s) 363, 611, 793
HphI GGTGA 2 cut(s) 163, 724
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 5 cut(s) 78, 210, 355, 525, 744
Hpy188III TCNNGA 3 cut(s) 191, 371, 536
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 68, 232, 402, 506, 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 3 cut(s) 75, 409, 743
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 5 cut(s) 62, 118, 194, 432, 638
Kzo9I GATC 3 cut(s) 94, 367, 712
LmnI GCTCC 1 cut(s) 710
Lsp1109I GCAGC 2 cut(s) 158, 490
LweI GCATC 2 cut(s) 112, 411
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 575
MalI GATC 3 cut(s) 96, 369, 714
MboI GATC 3 cut(s) 94, 367, 712
MboII GAAGA 5 cut(s) 89, 179, 266, 721, 758
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 2 cut(s) 94, 367
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 4 cut(s) 224, 332, 488, 684
MlyI GAGTC 2 cut(s) 175, 520
MmeI TCCRAC 2 cut(s) 263, 630
MnlI CCTC 4 cut(s) 64, 195, 431, 561
Mph1103I ATGCAT 1 cut(s) 548
MseI TTAA 2 cut(s) 39, 71
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 3 cut(s) 363, 611, 793
MspR9I CCNGG 3 cut(s) 364, 611, 793
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 2 cut(s) 232, 546
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 3 cut(s) 364, 611, 793
NdeII GATC 3 cut(s) 94, 367, 712
NlaIII CATG 5 cut(s) 62, 118, 194, 432, 638
NlaIV GGNNCC 3 cut(s) 15, 199, 369
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 638
PagI TCATGA 1 cut(s) 190
PciI ACATGT 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PctI GAATGC 2 cut(s) 232, 546
PfeI GAWTC 3 cut(s) 271, 350, 381
PflMI CCANNNNNTGG 2 cut(s) 256, 570
PkrI GCNGC 2 cut(s) 148, 505
PleI GAGTC 2 cut(s) 174, 520
PpsI GAGTC 2 cut(s) 174, 520
PscI ACATGT 1 cut(s) 634
Psp1406I AACGTT 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 15, 199, 369
PspPI GGNCC 4 cut(s) 14, 51, 538, 795
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 94, 367
RsaI GTAC 3 cut(s) 48, 86, 415
RsaNI GTAC 3 cut(s) 47, 85, 414
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 39, 71
SatI GCNGC 2 cut(s) 147, 504
Sau3AI GATC 3 cut(s) 94, 367, 712
Sau96I GGNCC 4 cut(s) 14, 51, 538, 795
SchI GAGTC 2 cut(s) 175, 520
ScrFI CCNGG 3 cut(s) 364, 611, 793
SduI GDGCHC 1 cut(s) 793
SfaNI GCATC 2 cut(s) 112, 411
SinI GGWCC 3 cut(s) 14, 51, 538
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 4 cut(s) 224, 332, 488, 684
SsiI CCGC 2 cut(s) 106, 808
SspMI CTAG 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 362, 609, 791
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 163
TasI AATT 4 cut(s) 224, 332, 488, 684
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 3 cut(s) 271, 350, 381
Tru1I TTAA 2 cut(s) 39, 71
Tru9I TTAA 2 cut(s) 39, 71
TscAI CASTG 2 cut(s) 475, 505
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 146, 503
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 17, 179, 417, 738
TspGWI ACGGA 2 cut(s) 283, 776
TspRI CASTG 2 cut(s) 475, 505
Van91I CCANNNNNTGG 2 cut(s) 256, 570
VpaK11BI GGWCC 3 cut(s) 14, 51, 538
XapI RAATTY 1 cut(s) 684
XceI RCATGY 1 cut(s) 638
XspI CTAG 1 cut(s) 465
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.