RchiOBHm_Chr3g0479941

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000889
Physical Location & Seq
Reverse (-)
25712458 .. 25713479
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44498

Sequence Viewer

Length: 369 bp
ATGCATGTCACTGATCTTTTGAAACACACGAACATGTTAGATGCCAAGCCTCTCTCTTCTCCGGCAGCAAGTGGAAAGCGCCCAAGTATTCATGAGGGTACCTTACTTTCATATCCAACTCAGTACCTAAGCACTGTTGGAGCTCTTCAGTATCTTACTTTGACAAGACCTGACATTGCATTTGCTGTCAATCAAGTCTGCAAGTATATGCATAGACCAACTACACTCCATTGGGTTGCAGTTAAAAGAATTCTTTGTTACTTGAAACACAGTCCCACTCACGGCCTATTCTATCAACCTAGCTCTCTCTCCATTACTGCTTTTCTTATGCAGATTATGCTGGAGATCCAGATGATCGCCATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase RVT_2

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

9.43

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 98
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 100, 125
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 22, 265
AluBI AGCT 2 cut(s) 143, 303
AluI AGCT 2 cut(s) 143, 303
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp718I GGTACC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 298
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 82
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 13, 345, 354
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 174
BssMI GATC 3 cut(s) 13, 345, 354
Bst4CI ACNGT 2 cut(s) 136, 272
Bst6I CTCTTC 2 cut(s) 61, 150
BstAPI GCANNNNNTGC 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 120, 128
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 3 cut(s) 16, 348, 357
BstMBI GATC 3 cut(s) 13, 345, 354
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstNSI RCATGY 2 cut(s) 8, 37
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 9, 132
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 99, 124
CviAII CATG 3 cut(s) 5, 34, 92
CviJI RGCY 4 cut(s) 49, 143, 285, 303
CviKI_1 RGCY 4 cut(s) 49, 143, 285, 303
CviQI GTAC 2 cut(s) 99, 124
DdeI CTNAG 2 cut(s) 120, 128
DpnI GATC 3 cut(s) 15, 347, 356
DpnII GATC 3 cut(s) 13, 345, 354
Eam1104I CTCTTC 2 cut(s) 61, 150
EarI CTCTTC 2 cut(s) 61, 150
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 249
EcoT22I ATGCAT 2 cut(s) 6, 213
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 3 cut(s) 8, 37, 95
FaqI GGGAC 1 cut(s) 258
FatI CATG 3 cut(s) 4, 33, 91
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 8, 37, 95
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HpaII CCGG 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 92, 349
HpyCH4III ACNGT 2 cut(s) 136, 272
HpyCH4V TGCA 6 cut(s) 4, 179, 201, 211, 239, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 120, 128
Hsp92II CATG 3 cut(s) 8, 37, 95
HspAI GCGC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 13, 345, 354
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 4 cut(s) 75, 183, 326, 362
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 7, 257
MalI GATC 3 cut(s) 15, 347, 356
MboI GATC 3 cut(s) 13, 345, 354
MboII GAAGA 2 cut(s) 48, 137
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 118, 140
MnlI CCTC 2 cut(s) 60, 88
Mph1103I ATGCAT 2 cut(s) 6, 213
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 32
MspI CCGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 337
NdeII GATC 3 cut(s) 13, 345, 354
NlaIII CATG 3 cut(s) 8, 37, 95
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 2 cut(s) 6, 213
NspI RCATGY 2 cut(s) 8, 37
PagI TCATGA 1 cut(s) 91
PciI ACATGT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 150
PkrI GCNGC 1 cut(s) 67
PscI ACATGT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 2 cut(s) 100, 125
RsaNI GTAC 2 cut(s) 99, 124
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 13, 345, 354
SduI GDGCHC 1 cut(s) 145
SetI ASST 6 cut(s) 104, 129, 145, 172, 301, 305
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 2 cut(s) 136, 272
TasI AATT 1 cut(s) 249
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 16, 139
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 80, 99
TspRI CASTG 2 cut(s) 16, 139
XapI RAATTY 1 cut(s) 249
XceI RCATGY 2 cut(s) 8, 37
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 2 cut(s) 6, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.