RchiOBHm_Chr7g0210861

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000889
Physical Location & Seq
Forward (+)
28222342 .. 28224414
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18867

Sequence Viewer

Length: 1467 bp
ATGGTTGTAACTTCCATCACTCACCAAATTGAGCCAAGCTGTTACTCTCAAGCAGCCAAGCAACAGGAATGGCGTTCTGCCATGAGCACAGAATTCAATGCTCTCATTCAAGCTGGTACATGGCAGCTCGTTCCCTATGCACCTTCAATGAATGTCCTTCCCAACAAATGGGTCTTCTGCATCAAAAGGAAACCGGATGGTTCAGTGGAACGATACAAAGCTCGCCTCGTAGCCAAAGGCTTTCGGCAGCAAGAAGGAATTGACTATGGTGAAACATTCAGTCCGGATGTTTATATGCAGCAACCACAGGGCTTCATTGACCCCCAATTTCCTACCCATGTTTGTAAGCTCCGCCGTTCTCTCTATGGCCTCAAACAAGCACCTAGGGCCTGGTTTTCTTGTTTTTCTACTTATTTGGAGGACTTAGGTTTCACAGCATCTCAAGCAGACACTTCTCTATTTGCCTGTCATTCAGGCAATATCAAGCTTTATTTACTTATATATGTGGATGATATCCTCGTCACTGGCACACATGCTGATCACATCAGTACTCTTATCACCAATTTGAGTAAACTCTTCTCTATGAAAGATTTGGGTCCATTACACTCTTTCTTGGGCATTGAGGTTGTGCGGTCATCTCATGGACTTGCATTAACTCAGACCAAGTACACTTTAGATCTTCTACACCGCACAAACATGACAGATGCTAAACCTGTTTCAACTCCGGCAGCTACTGGCAAACGTTTGAGTCTCACTGATGGCACTCCTCTTCATGATGGTTCCCAATATCGGAGTGTTGTAGGAGCCTTGCAGTACCTAACACTCACTCGCCCTGATATATCATTTGTCGTTAATCAGGTATGCCAGTTTCTGCATTCTCCAACAAATATGCATTGGGTGTCTGTCAAACGGATTCTTCATTATCTCAAACACACACCTACCTATGGCTTGTTCTACACTCCAAGCAACTTCAAATTAACAGGTTATAGTGATTCTGATTATGCCGGGGATCCAGACACAAGAATCTCAACAGGTGGCACTTGCATCTACTTGGGTACAAACCTCATTTCATGGAGTTCTAAAAAGCAGAGTGGAGTGTCTCGTTCTAGCACAGAAACGGAGTATCGTCAATTGGCCTATACTGCTGCACATATTTCTTGGCTTCGGGCTCTATTTCGGGACCTATGCATTCCTCTCCAGTCTCCCACCTTATGGTGTGACAACATTAGTGCCATATCTCTTGCTTCCAACCCTGTTTTTCATACGAGAACAAGACATGTGGAAGTTGATTATCATTACATTAGGGAAAAGGTCGTTCGCAAGGAAATTCAAGTTGCCTATATATGCTCCCAAGATCAAATCGCGGATATCTTCACCAAAGGTCTGAGTTCATCTCGCTTCCACTATCTTCTTTCCAAGCTTCTTGTCCGTGCCCGGCCCATCAGCTTGCGGGGTGGGGGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

488

Amino Acids

54.97

Weight (kDa)

9.13

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 40 - 95 7.2e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 97 - 243 1.2e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 168, 1212
AccII CGCG 1 cut(s) 1364
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 5 cut(s) 352, 631, 688, 1364, 1450
AclI AACGTT 1 cut(s) 742
AclWI GGATC 2 cut(s) 1004, 1017
AcsI RAATTY 2 cut(s) 92, 1326
AfaI GTAC 5 cut(s) 118, 550, 668, 815, 1057
AfiI CCNNNNNNNGG 4 cut(s) 168, 789, 944, 1212
AflIII ACRYGT 1 cut(s) 1276
AgsI TTSAA 6 cut(s) 97, 110, 147, 720, 973, 1331
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 9 cut(s) 39, 113, 127, 221, 349, 487, 731, 1420, 1446
AluI AGCT 9 cut(s) 39, 113, 127, 221, 349, 487, 731, 1420, 1446
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 3 cut(s) 755, 1104, 1206
AlwI GGATC 2 cut(s) 1004, 1017
AlwNI CAGNNNCTG 2 cut(s) 734, 871
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 4 cut(s) 367, 387, 1134, 1436
ApeKI GCWGC 6 cut(s) 53, 124, 247, 298, 728, 1145
ApoI RAATTY 2 cut(s) 92, 1326
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 387, 596, 1180, 1437
AsuC2I CCSGG 2 cut(s) 1006, 1435
AsuHPI GGTGA 4 cut(s) 14, 281, 550, 1366
AvaII GGWCC 2 cut(s) 596, 1180
AvrII CCTAGG 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 1435
BamHI GGATCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 1171
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 6 cut(s) 65, 136, 259, 310, 740, 1132
BccI CCATC 5 cut(s) 23, 191, 752, 770, 1448
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 391
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 2 cut(s) 1006, 1435
BcoDI GTCTC 3 cut(s) 755, 1104, 1206
BfaI CTAG 2 cut(s) 384, 1107
BglII AGATCT 1 cut(s) 676
BisI GCNGC 6 cut(s) 54, 125, 248, 299, 729, 1146
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 6 cut(s) 55, 126, 249, 300, 730, 1147
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 3 cut(s) 391, 1006, 1435
Bme18I GGWCC 2 cut(s) 596, 1180
BmgT120I GGNCC 4 cut(s) 387, 596, 1180, 1437
BmiI GGNNCC 5 cut(s) 597, 781, 805, 1011, 1181
BmrFI CCNGG 3 cut(s) 391, 1006, 1435
BmsI GCATC 4 cut(s) 189, 446, 694, 1053
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 1378, 1410
BpmI CTGGAG 1 cut(s) 1181
BpuEI CTTGAG 2 cut(s) 33, 426
BpuMI CCSGG 2 cut(s) 1006, 1435
BsaJI CCNNGG 2 cut(s) 383, 1005
BsaWI WCCGGW 2 cut(s) 193, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 789, 944, 1212
Bse1I ACTGG 4 cut(s) 529, 739, 865, 1198
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 383, 1005
BseGI GGATG 3 cut(s) 202, 292, 514
BseLI CCNNNNNNNGG 4 cut(s) 168, 789, 944, 1212
BseMII CTCAG 2 cut(s) 671, 1376
BseNI ACTGG 4 cut(s) 529, 739, 865, 1198
BseRI GAGGAG 1 cut(s) 756
BseSI GKGCMC 1 cut(s) 1435
BseXI GCAGC 6 cut(s) 65, 136, 259, 310, 740, 1132
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 1 cut(s) 1364
BshFI GGCC 4 cut(s) 369, 389, 1136, 1438
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 5 cut(s) 194, 284, 725, 1005, 1435
BslFI GGGAC 1 cut(s) 1193
BslI CCNNNNNNNGG 4 cut(s) 168, 789, 944, 1212
BsmAI GTCTC 3 cut(s) 755, 1104, 1206
BsmFI GGGAC 1 cut(s) 1193
BsmI GAATGC 2 cut(s) 874, 1188
BsnI GGCC 4 cut(s) 369, 389, 1136, 1438
Bsp1286I GDGCHC 3 cut(s) 89, 1171, 1435
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 4 cut(s) 538, 676, 1009, 1354
BspACI CCGC 5 cut(s) 352, 631, 688, 1364, 1450
BspANI GGCC 4 cut(s) 369, 389, 1136, 1438
BspCNI CTCAG 2 cut(s) 670, 1377
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 1 cut(s) 1364
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 5 cut(s) 597, 781, 805, 1011, 1181
BspPI GGATC 2 cut(s) 1004, 1017
BsrI ACTGG 4 cut(s) 529, 739, 865, 1198
BssECI CCNNGG 2 cut(s) 383, 1005
BssMI GATC 4 cut(s) 538, 676, 1009, 1354
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 391
Bst6I CTCTTC 2 cut(s) 581, 774
BstC8I GCNNGC 2 cut(s) 223, 1448
BstDEI CTNAG 3 cut(s) 424, 657, 1385
BstF5I GGATG 3 cut(s) 202, 292, 514
BstFNI CGCG 1 cut(s) 1364
BstKTI GATC 4 cut(s) 541, 679, 1012, 1357
BstMAI GTCTC 3 cut(s) 755, 1104, 1206
BstMBI GATC 4 cut(s) 538, 676, 1009, 1354
BstMWI GCNNNNNNNGC 3 cut(s) 386, 443, 1142
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 2 cut(s) 536, 1280
BstSCI CCNGG 3 cut(s) 389, 1004, 1433
BstSLI GKGCMC 1 cut(s) 1435
BstUI CGCG 1 cut(s) 1364
BstV1I GCAGC 6 cut(s) 65, 136, 259, 310, 740, 1132
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 676, 1009
BstYI RGATCY 2 cut(s) 676, 1009
BsuRI GGCC 4 cut(s) 369, 389, 1136, 1438
BtsCI GGATG 3 cut(s) 202, 292, 514
BtsIMutI CAGTG 3 cut(s) 210, 522, 753
Cac8I GCNNGC 2 cut(s) 223, 1448
CaiI CAGNNNCTG 2 cut(s) 734, 871
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 4 cut(s) 387, 596, 1180, 1437
Csp6I GTAC 5 cut(s) 117, 549, 667, 814, 1056
CspCI CAANNNNNGTGG 2 cut(s) 1260, 1295
CviAII CATG 9 cut(s) 82, 120, 338, 533, 641, 697, 773, 1071, 1277
CviQI GTAC 5 cut(s) 117, 549, 667, 814, 1056
DdeI CTNAG 3 cut(s) 424, 657, 1385
DpnI GATC 4 cut(s) 540, 678, 1011, 1356
DpnII GATC 4 cut(s) 538, 676, 1009, 1354
Eam1104I CTCTTC 2 cut(s) 581, 774
EarI CTCTTC 2 cut(s) 581, 774
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 1171
Eco32I GATATC 2 cut(s) 514, 1369
Eco47I GGWCC 2 cut(s) 596, 1180
EcoO109I RGGNCCY 2 cut(s) 387, 1180
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 389
EcoRV GATATC 2 cut(s) 514, 1369
EcoT14I CCWWGG 1 cut(s) 383
EcoT22I ATGCAT 2 cut(s) 894, 1190
EcoT38I GRGCYC 1 cut(s) 1171
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 9 cut(s) 85, 123, 341, 536, 644, 700, 776, 1074, 1280
FaqI GGGAC 1 cut(s) 1193
FatI CATG 9 cut(s) 81, 119, 337, 532, 640, 696, 772, 1070, 1276
FauI CCCGC 1 cut(s) 1443
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 6 cut(s) 54, 125, 248, 299, 729, 1146
FokI GGATG 3 cut(s) 209, 299, 521
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 6 cut(s) 54, 125, 248, 299, 729, 1146
FspBI CTAG 2 cut(s) 384, 1107
GluI GCNGC 6 cut(s) 54, 125, 248, 299, 729, 1146
GsuI CTGGAG 1 cut(s) 1181
HaeIII GGCC 4 cut(s) 369, 389, 1136, 1438
HapII CCGG 5 cut(s) 194, 284, 725, 1005, 1435
Hin1II CATG 9 cut(s) 85, 123, 341, 536, 644, 700, 776, 1074, 1280
HindIII AAGCTT 2 cut(s) 485, 1418
HinfI GANTC 4 cut(s) 748, 913, 992, 1023
HpaII CCGG 5 cut(s) 194, 284, 725, 1005, 1435
HphI GGTGA 4 cut(s) 14, 281, 550, 1366
Hpy166II GTNNAC 2 cut(s) 572, 669
Hpy188I TCNGA 4 cut(s) 660, 792, 997, 1386
Hpy188III TCNNGA 4 cut(s) 284, 773, 1013, 1178
Hpy8I GTNNAC 2 cut(s) 572, 669
HpyAV CCTTC 3 cut(s) 153, 167, 248
HpyCH4IV ACGT 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 443, 1142
HpyF3I CTNAG 3 cut(s) 424, 657, 1385
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 9 cut(s) 85, 123, 341, 536, 644, 700, 776, 1074, 1280
Kpn2I TCCGGA 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 4 cut(s) 538, 676, 1009, 1354
LmnI GCTCC 3 cut(s) 354, 803, 1352
Lsp1109I GCAGC 6 cut(s) 65, 136, 259, 310, 740, 1132
LweI GCATC 4 cut(s) 189, 446, 694, 1053
MaeI CTAG 2 cut(s) 384, 1107
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 4 cut(s) 7, 41, 520, 1217
MalI GATC 4 cut(s) 540, 678, 1011, 1356
MboI GATC 4 cut(s) 538, 676, 1009, 1354
MboII GAAGA 7 cut(s) 166, 568, 671, 761, 908, 1363, 1400
MfeI CAATTG 1 cut(s) 1130
MflI RGATCY 2 cut(s) 676, 1009
MhlI GDGCHC 3 cut(s) 89, 1171, 1435
MluCI AATT 8 cut(s) 27, 92, 258, 326, 562, 974, 1130, 1326
MlyI GAGTC 1 cut(s) 757
MmeI TCCRAC 2 cut(s) 905, 1272
MnlI CCTC 8 cut(s) 236, 380, 412, 527, 616, 777, 1073, 1203
Mph1103I ATGCAT 2 cut(s) 894, 1190
MroI TCCGGA 1 cut(s) 283
MseI TTAA 3 cut(s) 653, 852, 977
MslI CAYNNNNRTG 1 cut(s) 695
MspI CCGG 5 cut(s) 194, 284, 725, 1005, 1435
MspR9I CCNGG 3 cut(s) 391, 1006, 1435
MunI CAATTG 1 cut(s) 1130
Mva1269I GAATGC 2 cut(s) 874, 1188
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 1 cut(s) 1364
MwoI GCNNNNNNNGC 3 cut(s) 386, 443, 1142
NciI CCSGG 2 cut(s) 1006, 1435
NdeII GATC 4 cut(s) 538, 676, 1009, 1354
NlaIII CATG 9 cut(s) 85, 123, 341, 536, 644, 700, 776, 1074, 1280
NlaIV GGNNCC 5 cut(s) 597, 781, 805, 1011, 1181
NmuCI GTSAC 2 cut(s) 520, 1217
NsiI ATGCAT 2 cut(s) 894, 1190
NspI RCATGY 2 cut(s) 536, 1280
PagI TCATGA 1 cut(s) 772
PciI ACATGT 1 cut(s) 1276
PctI GAATGC 2 cut(s) 874, 1188
PfeI GAWTC 3 cut(s) 913, 992, 1023
PflMI CCANNNNNTGG 2 cut(s) 168, 1212
PkrI GCNGC 6 cut(s) 55, 126, 249, 300, 730, 1147
PleI GAGTC 1 cut(s) 756
PpsI GAGTC 1 cut(s) 756
PpuMI RGGWCCY 1 cut(s) 1180
PscI ACATGT 1 cut(s) 1276
Psp1406I AACGTT 1 cut(s) 742
Psp5II RGGWCCY 1 cut(s) 1180
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 5 cut(s) 597, 781, 805, 1011, 1181
PspPI GGNCC 4 cut(s) 387, 596, 1180, 1437
PspPPI RGGWCCY 1 cut(s) 1180
PstNI CAGNNNCTG 2 cut(s) 734, 871
PsuI RGATCY 2 cut(s) 676, 1009
RsaI GTAC 5 cut(s) 118, 550, 668, 815, 1057
RsaNI GTAC 5 cut(s) 117, 549, 667, 814, 1056
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 3 cut(s) 653, 852, 977
SatI GCNGC 6 cut(s) 54, 125, 248, 299, 729, 1146
Sau3AI GATC 4 cut(s) 538, 676, 1009, 1354
Sau96I GGNCC 4 cut(s) 387, 596, 1180, 1437
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 3 cut(s) 391, 1006, 1435
SduI GDGCHC 3 cut(s) 89, 1171, 1435
SfaNI GCATC 4 cut(s) 189, 446, 694, 1053
SinI GGWCC 2 cut(s) 596, 1180
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 48, 441
SmoI CTYRAG 2 cut(s) 48, 441
Sse9I AATT 8 cut(s) 27, 92, 258, 326, 562, 974, 1130, 1326
SsiI CCGC 5 cut(s) 352, 631, 688, 1364, 1450
SspMI CTAG 2 cut(s) 384, 1107
StyD4I CCNGG 3 cut(s) 389, 1004, 1433
StyI CCWWGG 1 cut(s) 383
TaiI ACGT 1 cut(s) 745
TasI AATT 8 cut(s) 27, 92, 258, 326, 562, 974, 1130, 1326
TatI WGTACW 2 cut(s) 548, 666
TfiI GAWTC 3 cut(s) 913, 992, 1023
Tru1I TTAA 3 cut(s) 653, 852, 977
Tru9I TTAA 3 cut(s) 653, 852, 977
TscAI CASTG 3 cut(s) 210, 529, 760
TseFI GTSAC 2 cut(s) 520, 1217
TseI GCWGC 6 cut(s) 53, 124, 247, 298, 728, 1145
Tsp45I GTSAC 2 cut(s) 520, 1217
TspDTI ATGAA 8 cut(s) 164, 304, 599, 761, 908, 1059, 1250, 1380
TspGWI ACGGA 3 cut(s) 925, 1133, 1418
TspRI CASTG 3 cut(s) 210, 529, 760
Van91I CCANNNNNTGG 2 cut(s) 168, 1212
VpaK11BI GGWCC 2 cut(s) 596, 1180
XapI RAATTY 2 cut(s) 92, 1326
XceI RCATGY 2 cut(s) 536, 1280
XmaJI CCTAGG 1 cut(s) 383
XspI CTAG 2 cut(s) 384, 1107
ZrmI AGTACT 1 cut(s) 550
Zsp2I ATGCAT 2 cut(s) 894, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.