Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 30 - 167 | 2.7e-14 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 316 - 393 | 5.6e-13 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 425 - 491 | 6.2e-11 | GAG-pre-integrase domain |
| rve | PF00665 | 508 - 606 | 7.2e-10 | Integrase core domain |
| SH3_retrovirus | PF25597 | 679 - 741 | 2.7e-21 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 880 - 1119 | 1.5e-69 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| ABC_tran | PF00005 | 1275 - 1377 | 1.7e-08 | ABC transporter |
| ABC2_membrane | PF01061 | 1523 - 1735 | 2.1e-57 | ABC-2 type transporter |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1581 |
| Acc36I | ACCTGC | 1 cut(s) | 2245 |
| AccB1I | GGYRCC | 3 cut(s) | 1427, 4305, 5246 |
| AccBSI | CCGCTC | 1 cut(s) | 521 |
| AccI | GTMKAC | 1 cut(s) | 5004 |
| AccII | CGCG | 2 cut(s) | 180, 4824 |
| AclWI | GGATC | 8 cut(s) | 61, 633, 646, 1236, 2587, 2600, 3381, 3791 |
| AcsI | RAATTY | 4 cut(s) | 813, 1693, 1742, 4964 |
| AcuI | CTGAAG | 3 cut(s) | 2628, 2894, 3479 |
| AcyI | GRCGYC | 1 cut(s) | 4306 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 716, 1019, 1289, 1424, 1909, 2231, 4130, 4514, 5243 |
| AflIII | ACRYGT | 4 cut(s) | 1748, 2179, 3886, 5323 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4131 |
| AjnI | CCWGG | 9 cut(s) | 86, 2048, 2334, 2938, 3020, 3920, 5044, 5174, 5236 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 192, 224, 1683, 1715, 2296, 2328, 4531, 4563 |
| Alw21I | GWGCWC | 1 cut(s) | 918 |
| Alw44I | GTGCAC | 1 cut(s) | 914 |
| AlwI | GGATC | 8 cut(s) | 61, 633, 646, 1236, 2587, 2600, 3381, 3791 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 350, 1733, 1865, 2006, 3046 |
| Ama87I | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| AoxI | GGCC | 8 cut(s) | 537, 1550, 1680, 3018, 3624, 4024, 5047, 5188 |
| ApaLI | GTGCAC | 1 cut(s) | 914 |
| ApoI | RAATTY | 4 cut(s) | 813, 1693, 1742, 4964 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2049, 2081 |
| AseI | ATTAAT | 1 cut(s) | 1944 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 18, 147, 531, 2613, 4843, 5264 |
| AspLEI | GCGC | 3 cut(s) | 303, 965, 4308 |
| AsuC2I | CCSGG | 8 cut(s) | 3505, 3506, 4031, 4032, 4346, 4347, 4515, 4516 |
| AsuII | TTCGAA | 1 cut(s) | 1390 |
| AvaI | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| BaeGI | GKGCMC | 1 cut(s) | 918 |
| BamHI | GGATCC | 2 cut(s) | 638, 2592 |
| BanI | GGYRCC | 3 cut(s) | 1427, 4305, 5246 |
| BauI | CACGAG | 3 cut(s) | 3125, 3146, 3843 |
| Bbv12I | GWGCWC | 1 cut(s) | 918 |
| BceAI | ACGGC | 5 cut(s) | 1944, 2831, 2917, 4064, 5035 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 4814, 4848, 5011, 5045 |
| BciT130I | CCWGG | 9 cut(s) | 88, 2050, 2336, 2940, 3022, 3922, 5046, 5176, 5238 |
| BclI | TGATCA | 4 cut(s) | 352, 2584, 3114, 3687 |
| BcnI | CCSGG | 8 cut(s) | 3505, 3506, 4031, 4032, 4346, 4347, 4515, 4516 |
| BfaI | CTAG | 4 cut(s) | 711, 1266, 1518, 4143 |
| BfmI | CTRYAG | 6 cut(s) | 296, 1377, 1464, 2134, 2567, 4878 |
| BfoI | RGCGCY | 2 cut(s) | 966, 4309 |
| BfuAI | ACCTGC | 1 cut(s) | 2245 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 899 |
| BglII | AGATCT | 4 cut(s) | 245, 3413, 4525, 4714 |
| BlpI | GCTNAGC | 1 cut(s) | 3194 |
| BmcAI | AGTACT | 2 cut(s) | 1330, 1586 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4131 |
| BmeT110I | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| BmrI | ACTGGG | 3 cut(s) | 1918, 2643, 5167 |
| BmuI | ACTGGG | 3 cut(s) | 1918, 2643, 5167 |
| BoxI | GACNNNNGTC | 1 cut(s) | 4649 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1643, 1675, 4600, 4632 |
| BpmI | CTGGAG | 6 cut(s) | 1041, 1328, 1542, 3715, 4415, 5028 |
| Bpu10I | CCTNAGC | 4 cut(s) | 555, 1818, 2754, 4869 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3194 |
| Bpu14I | TTCGAA | 1 cut(s) | 1390 |
| BpuEI | CTTGAG | 6 cut(s) | 252, 507, 534, 1544, 2385, 3270 |
| BpuMI | CCSGG | 8 cut(s) | 3505, 3506, 4031, 4032, 4346, 4347, 4515, 4516 |
| Bsa29I | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BsaAI | YACGTR | 1 cut(s) | 4453 |
| BsaBI | GATNNNNATC | 1 cut(s) | 357 |
| BsaHI | GRCGYC | 1 cut(s) | 4306 |
| BsaI | GGTCTC | 5 cut(s) | 467, 2649, 3251, 3278, 4139 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 3632, 3662, 4266, 4296, 4442, 4472, 4495, 4525 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 716, 1019, 1289, 1424, 1909, 2231, 4130, 4514, 5243 |
| Bse118I | RCCGGY | 1 cut(s) | 3626 |
| Bse3DI | GCAATG | 3 cut(s) | 721, 1389, 2607 |
| Bse8I | GATNNNNATC | 1 cut(s) | 357 |
| BseBI | CCWGG | 9 cut(s) | 88, 2050, 2336, 2940, 3022, 3922, 5046, 5176, 5238 |
| BseCI | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BseJI | GATNNNNATC | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 716, 1019, 1289, 1424, 1909, 2231, 4130, 4514, 5243 |
| BseMI | GCAATG | 3 cut(s) | 721, 1389, 2607 |
| BseMII | CTCAG | 8 cut(s) | 256, 569, 1641, 1809, 2243, 3208, 4631, 4883 |
| BseRI | GAGGAG | 5 cut(s) | 2365, 2652, 2953, 3003, 4916 |
| BseSI | GKGCMC | 1 cut(s) | 918 |
| BseYI | CCCAGC | 2 cut(s) | 2081, 5331 |
| BsgI | GTGCAG | 3 cut(s) | 614, 1851, 4192 |
| Bsh1236I | CGCG | 2 cut(s) | 180, 4824 |
| BshFI | GGCC | 8 cut(s) | 539, 1552, 1682, 3020, 3626, 4026, 5049, 5190 |
| BshNI | GGYRCC | 3 cut(s) | 1427, 4305, 5246 |
| BshVI | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BsiHKAI | GWGCWC | 1 cut(s) | 918 |
| BsiHKCI | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| BsiSI | CCGG | 7 cut(s) | 1334, 3505, 3627, 4031, 4346, 4515, 4836 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 716, 1019, 1289, 1424, 1909, 2231, 4130, 4514, 5243 |
| BsmI | GAATGC | 3 cut(s) | 1078, 1293, 3534 |
| BsnI | GGCC | 8 cut(s) | 539, 1552, 1682, 3020, 3626, 4026, 5049, 5190 |
| Bso31I | GGTCTC | 5 cut(s) | 467, 2649, 3251, 3278, 4139 |
| BsoBI | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| Bsp119I | TTCGAA | 1 cut(s) | 1390 |
| Bsp1286I | GDGCHC | 1 cut(s) | 918 |
| Bsp1407I | TGTACA | 1 cut(s) | 1451 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3194 |
| BspANI | GGCC | 8 cut(s) | 539, 1552, 1682, 3020, 3626, 4026, 5049, 5190 |
| BspCNI | CTCAG | 8 cut(s) | 255, 568, 1642, 1810, 2242, 3207, 4630, 4882 |
| BspDI | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BspFNI | CGCG | 2 cut(s) | 180, 4824 |
| BspHI | TCATGA | 5 cut(s) | 355, 486, 3301, 3799, 4641 |
| BspMAI | CTGCAG | 1 cut(s) | 300 |
| BspMI | ACCTGC | 1 cut(s) | 2245 |
| BspPI | GGATC | 8 cut(s) | 61, 633, 646, 1236, 2587, 2600, 3381, 3791 |
| BspQI | GCTCTTC | 2 cut(s) | 1002, 1997 |
| BspT104I | TTCGAA | 1 cut(s) | 1390 |
| BspT107I | GGYRCC | 3 cut(s) | 1427, 4305, 5246 |
| BspTNI | GGTCTC | 5 cut(s) | 467, 2649, 3251, 3278, 4139 |
| BsrBI | CCGCTC | 1 cut(s) | 521 |
| BsrDI | GCAATG | 3 cut(s) | 721, 1389, 2607 |
| BsrFI | RCCGGY | 1 cut(s) | 3626 |
| BsrGI | TGTACA | 1 cut(s) | 1451 |
| BssAI | RCCGGY | 1 cut(s) | 3626 |
| BssNI | GRCGYC | 1 cut(s) | 4306 |
| BssSI | CACGAG | 3 cut(s) | 3125, 3146, 3843 |
| BssT1I | CCWWGG | 6 cut(s) | 1288, 1979, 2505, 3241, 3355, 4759 |
| Bst2BI | CACGAG | 3 cut(s) | 3125, 3146, 3843 |
| Bst2UI | CCWGG | 9 cut(s) | 88, 2050, 2336, 2940, 3022, 3922, 5046, 5176, 5238 |
| BstACI | GRCGYC | 1 cut(s) | 4306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1084 |
| BstAUI | TGTACA | 1 cut(s) | 1451 |
| BstBAI | YACGTR | 1 cut(s) | 4453 |
| BstBI | TTCGAA | 1 cut(s) | 1390 |
| BstC8I | GCNNGC | 7 cut(s) | 1554, 2079, 2322, 2772, 2978, 3628, 3724 |
| BstDSI | CCRYGG | 1 cut(s) | 4080 |
| BstEII | GGTNACC | 1 cut(s) | 5222 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| BstFNI | CGCG | 2 cut(s) | 180, 4824 |
| BstH2I | RGCGCY | 2 cut(s) | 966, 4309 |
| BstHHI | GCGC | 3 cut(s) | 303, 965, 4308 |
| BstNI | CCWGG | 9 cut(s) | 88, 2050, 2336, 2940, 3022, 3922, 5046, 5176, 5238 |
| BstNSI | RCATGY | 4 cut(s) | 1752, 2183, 3890, 5327 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 4649 |
| BstPI | GGTNACC | 1 cut(s) | 5222 |
| BstSFI | CTRYAG | 6 cut(s) | 296, 1377, 1464, 2134, 2567, 4878 |
| BstSLI | GKGCMC | 1 cut(s) | 918 |
| BstSNI | TACGTA | 1 cut(s) | 4453 |
| BstUI | CGCG | 2 cut(s) | 180, 4824 |
| BstX2I | RGATCY | 7 cut(s) | 245, 638, 2592, 3413, 3783, 4525, 4714 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 445, 2512, 4081, 5142 |
| BstYI | RGATCY | 7 cut(s) | 245, 638, 2592, 3413, 3783, 4525, 4714 |
| Bsu15I | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BsuRI | GGCC | 8 cut(s) | 539, 1552, 1682, 3020, 3626, 4026, 5049, 5190 |
| BsuTUI | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| BtgI | CCRYGG | 1 cut(s) | 4080 |
| BtsI | GCAGTG | 1 cut(s) | 4401 |
| BveI | ACCTGC | 1 cut(s) | 2245 |
| Cac8I | GCNNGC | 7 cut(s) | 1554, 2079, 2322, 2772, 2978, 3628, 3724 |
| CaiI | CAGNNNCTG | 5 cut(s) | 350, 1733, 1865, 2006, 3046 |
| CciI | TCATGA | 5 cut(s) | 355, 486, 3301, 3799, 4641 |
| CfoI | GCGC | 3 cut(s) | 303, 965, 4308 |
| Cfr10I | RCCGGY | 1 cut(s) | 3626 |
| Cfr9I | CCCGGG | 4 cut(s) | 3504, 4030, 4345, 4514 |
| ClaI | ATCGAT | 3 cut(s) | 205, 411, 1948 |
| CseI | GACGC | 1 cut(s) | 3654 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3337, 3372, 3554, 3589 |
| DinI | GGCGCC | 1 cut(s) | 4307 |
| DraI | TTTAAA | 3 cut(s) | 1176, 1401, 2500 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4131 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4131 |
| EciI | GGCGGA | 1 cut(s) | 228 |
| Eco105I | TACGTA | 1 cut(s) | 4453 |
| Eco130I | CCWWGG | 6 cut(s) | 1288, 1979, 2505, 3241, 3355, 4759 |
| Eco147I | AGGCCT | 2 cut(s) | 539, 1682 |
| Eco31I | GGTCTC | 5 cut(s) | 467, 2649, 3251, 3278, 4139 |
| Eco32I | GATATC | 4 cut(s) | 988, 2881, 3142, 3460 |
| Eco57I | CTGAAG | 3 cut(s) | 2628, 2894, 3479 |
| Eco88I | CYCGRG | 7 cut(s) | 3015, 3248, 3504, 4030, 4301, 4345, 4514 |
| Eco91I | GGTNACC | 1 cut(s) | 5222 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| EcoO109I | RGGNCCY | 3 cut(s) | 560, 2234, 3224 |
| EcoO65I | GGTNACC | 1 cut(s) | 5222 |
| EcoRI | GAATTC | 1 cut(s) | 1742 |
| EcoRII | CCWGG | 9 cut(s) | 86, 2048, 2334, 2938, 3020, 3920, 5044, 5174, 5236 |
| EcoRV | GATATC | 4 cut(s) | 988, 2881, 3142, 3460 |
| EcoT14I | CCWWGG | 6 cut(s) | 1288, 1979, 2505, 3241, 3355, 4759 |
| EcoT22I | ATGCAT | 3 cut(s) | 397, 4596, 4864 |
| EgeI | GGCGCC | 1 cut(s) | 4307 |
| EheI | GGCGCC | 1 cut(s) | 4307 |
| ErhI | CCWWGG | 6 cut(s) | 1288, 1979, 2505, 3241, 3355, 4759 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1398, 1430, 2730, 2762, 4410, 4442 |
| FauI | CCCGC | 3 cut(s) | 185, 3458, 5314 |
| FauNDI | CATATG | 2 cut(s) | 397, 3324 |
| FbaI | TGATCA | 4 cut(s) | 352, 2584, 3114, 3687 |
| FblI | GTMKAC | 1 cut(s) | 5004 |
| FspBI | CTAG | 4 cut(s) | 711, 1266, 1518, 4143 |
| GlaI | GCGC | 3 cut(s) | 302, 964, 4307 |
| GsaI | CCCAGC | 2 cut(s) | 2085, 5335 |
| GsuI | CTGGAG | 6 cut(s) | 1041, 1328, 1542, 3715, 4415, 5028 |
| HaeII | RGCGCY | 2 cut(s) | 966, 4309 |
| HaeIII | GGCC | 8 cut(s) | 539, 1552, 1682, 3020, 3626, 4026, 5049, 5190 |
| HapII | CCGG | 7 cut(s) | 1334, 3505, 3627, 4031, 4346, 4515, 4836 |
| HgaI | GACGC | 1 cut(s) | 3654 |
| HhaI | GCGC | 3 cut(s) | 303, 965, 4308 |
| Hin1I | GRCGYC | 1 cut(s) | 4306 |
| Hin6I | GCGC | 3 cut(s) | 301, 963, 4306 |
| HinP1I | GCGC | 3 cut(s) | 301, 963, 4306 |
| HincII | GTYRAC | 3 cut(s) | 2782, 3475, 4096 |
| HindII | GTYRAC | 3 cut(s) | 2782, 3475, 4096 |
| HindIII | AAGCTT | 9 cut(s) | 582, 1407, 1917, 2018, 2075, 2978, 4242, 4319, 4575 |
| HpaI | GTTAAC | 1 cut(s) | 4096 |
| HpaII | CCGG | 7 cut(s) | 1334, 3505, 3627, 4031, 4346, 4515, 4836 |
| HpyCH4IV | ACGT | 4 cut(s) | 1106, 3541, 4270, 4452 |
| HpySE526I | ACGT | 4 cut(s) | 1106, 3541, 4270, 4452 |
| Hsp92I | GRCGYC | 1 cut(s) | 4306 |
| HspAI | GCGC | 3 cut(s) | 301, 963, 4306 |
| KasI | GGCGCC | 1 cut(s) | 4305 |
| KroI | GCCGGC | 1 cut(s) | 3626 |
| KroNI | GCCGGC | 1 cut(s) | 3628 |
| Ksp22I | TGATCA | 4 cut(s) | 352, 2584, 3114, 3687 |
| KspAI | GTTAAC | 1 cut(s) | 4096 |
| LguI | GCTCTTC | 2 cut(s) | 1002, 1997 |
| MaeI | CTAG | 4 cut(s) | 711, 1266, 1518, 4143 |
| MaeII | ACGT | 4 cut(s) | 1106, 3541, 4270, 4452 |
| MbiI | CCGCTC | 1 cut(s) | 521 |
| MfeI | CAATTG | 1 cut(s) | 2857 |
| MflI | RGATCY | 7 cut(s) | 245, 638, 2592, 3413, 3783, 4525, 4714 |
| MhlI | GDGCHC | 1 cut(s) | 918 |
| Mly113I | GGCGCC | 1 cut(s) | 4306 |
| MlyI | GAGTC | 5 cut(s) | 950, 1867, 2243, 4007, 5035 |
| MmeI | TCCRAC | 4 cut(s) | 1681, 2875, 3351, 4562 |
| Mph1103I | ATGCAT | 3 cut(s) | 397, 4596, 4864 |
| MroNI | GCCGGC | 1 cut(s) | 3626 |
| MroXI | GAANNNNTTC | 6 cut(s) | 18, 147, 531, 2613, 4843, 5264 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1539, 3327, 4079, 4112, 5069 |
| MspA1I | CMGCKG | 7 cut(s) | 1803, 2040, 2264, 3693, 3767, 3852, 4696 |
| MspI | CCGG | 7 cut(s) | 1334, 3505, 3627, 4031, 4346, 4515, 4836 |
| MunI | CAATTG | 1 cut(s) | 2857 |
| Mva1269I | GAATGC | 3 cut(s) | 1078, 1293, 3534 |
| MvaI | CCWGG | 9 cut(s) | 88, 2050, 2336, 2940, 3022, 3922, 5046, 5176, 5238 |
| MvnI | CGCG | 2 cut(s) | 180, 4824 |
| NaeI | GCCGGC | 1 cut(s) | 3628 |
| NarI | GGCGCC | 1 cut(s) | 4306 |
| NciI | CCSGG | 8 cut(s) | 3505, 3506, 4031, 4032, 4346, 4347, 4515, 4516 |
| NdeI | CATATG | 2 cut(s) | 397, 3324 |
| NgoMIV | GCCGGC | 1 cut(s) | 3626 |
| NsiI | ATGCAT | 3 cut(s) | 397, 4596, 4864 |
| NspI | RCATGY | 4 cut(s) | 1752, 2183, 3890, 5327 |
| NspV | TTCGAA | 1 cut(s) | 1390 |
| PaeR7I | CTCGAG | 1 cut(s) | 3248 |
| PagI | TCATGA | 5 cut(s) | 355, 486, 3301, 3799, 4641 |
| PceI | AGGCCT | 2 cut(s) | 539, 1682 |
| PciI | ACATGT | 4 cut(s) | 1748, 2179, 3886, 5323 |
| PciSI | GCTCTTC | 2 cut(s) | 1002, 1997 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2704, 3538 |
| PctI | GAATGC | 3 cut(s) | 1078, 1293, 3534 |
| PdiI | GCCGGC | 1 cut(s) | 3628 |
| PdmI | GAANNNNTTC | 6 cut(s) | 18, 147, 531, 2613, 4843, 5264 |
| PflFI | GACNNNGTC | 2 cut(s) | 2641, 5228 |
| PfoI | TCCNGGA | 1 cut(s) | 5174 |
| PleI | GAGTC | 5 cut(s) | 950, 1867, 2243, 4007, 5035 |
| PluTI | GGCGCC | 1 cut(s) | 4309 |
| PpsI | GAGTC | 5 cut(s) | 950, 1867, 2243, 4007, 5035 |
| Ppu21I | YACGTR | 1 cut(s) | 4453 |
| PpuMI | RGGWCCY | 3 cut(s) | 560, 2234, 3224 |
| PscI | ACATGT | 4 cut(s) | 1748, 2179, 3886, 5323 |
| PshAI | GACNNNNGTC | 1 cut(s) | 4649 |
| PshBI | ATTAAT | 1 cut(s) | 1944 |
| PsiI | TTATAA | 1 cut(s) | 1581 |
| Psp5II | RGGWCCY | 3 cut(s) | 560, 2234, 3224 |
| Psp6I | CCWGG | 9 cut(s) | 86, 2048, 2334, 2938, 3020, 3920, 5044, 5174, 5236 |
| PspEI | GGTNACC | 1 cut(s) | 5222 |
| PspFI | CCCAGC | 2 cut(s) | 2081, 5331 |
| PspGI | CCWGG | 9 cut(s) | 86, 2048, 2334, 2938, 3020, 3920, 5044, 5174, 5236 |
| PspPPI | RGGWCCY | 3 cut(s) | 560, 2234, 3224 |
| PstI | CTGCAG | 1 cut(s) | 300 |
| PstNI | CAGNNNCTG | 5 cut(s) | 350, 1733, 1865, 2006, 3046 |
| PsuI | RGATCY | 7 cut(s) | 245, 638, 2592, 3413, 3783, 4525, 4714 |
| PsyI | GACNNNGTC | 2 cut(s) | 2641, 5228 |
| PvuII | CAGCTG | 4 cut(s) | 1803, 2040, 3693, 3767 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1539, 3327, 4079, 4112, 5069 |
| SapI | GCTCTTC | 2 cut(s) | 1002, 1997 |
| ScaI | AGTACT | 2 cut(s) | 1330, 1586 |
| SchI | GAGTC | 5 cut(s) | 950, 1867, 2243, 4007, 5035 |
| SduI | GDGCHC | 1 cut(s) | 918 |
| SfcI | CTRYAG | 6 cut(s) | 296, 1377, 1464, 2134, 2567, 4878 |
| SfoI | GGCGCC | 1 cut(s) | 4307 |
| Sfr274I | CTCGAG | 1 cut(s) | 3248 |
| SfuI | TTCGAA | 1 cut(s) | 1390 |
| SlaI | CTCGAG | 1 cut(s) | 3248 |
| SmaI | CCCGGG | 4 cut(s) | 3506, 4032, 4347, 4516 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1539, 3327, 4079, 4112, 5069 |
| SmlI | CTYRAG | 7 cut(s) | 267, 522, 549, 1523, 2400, 3248, 3285 |
| SmoI | CTYRAG | 7 cut(s) | 267, 522, 549, 1523, 2400, 3248, 3285 |
| SnaBI | TACGTA | 1 cut(s) | 4453 |
| SseBI | AGGCCT | 2 cut(s) | 539, 1682 |
| SspDI | GGCGCC | 1 cut(s) | 4305 |
| SspI | AATATT | 2 cut(s) | 2674, 4547 |
| SspMI | CTAG | 4 cut(s) | 711, 1266, 1518, 4143 |
| StuI | AGGCCT | 2 cut(s) | 539, 1682 |
| StyI | CCWWGG | 6 cut(s) | 1288, 1979, 2505, 3241, 3355, 4759 |
| TaiI | ACGT | 4 cut(s) | 1109, 3544, 4273, 4455 |
| TaqII | GACCGA | 2 cut(s) | 523, 4658 |
| TatI | WGTACW | 7 cut(s) | 1328, 1451, 1584, 1591, 3408, 4502, 4620 |
| TauI | GCSGC | 5 cut(s) | 227, 335, 5109, 5318, 5321 |
| TspGWI | ACGGA | 3 cut(s) | 871, 1885, 3917 |
| TspMI | CCCGGG | 4 cut(s) | 3504, 4030, 4345, 4514 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2641, 5228 |
| VneI | GTGCAC | 1 cut(s) | 914 |
| VspI | ATTAAT | 1 cut(s) | 1944 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1287 |
| XapI | RAATTY | 4 cut(s) | 813, 1693, 1742, 4964 |
| XceI | RCATGY | 4 cut(s) | 1752, 2183, 3890, 5327 |
| XhoI | CTCGAG | 1 cut(s) | 3248 |
| XmaI | CCCGGG | 4 cut(s) | 3504, 4030, 4345, 4514 |
| XmiI | GTMKAC | 1 cut(s) | 5004 |
| XmnI | GAANNNNTTC | 6 cut(s) | 18, 147, 531, 2613, 4843, 5264 |
| XspI | CTAG | 4 cut(s) | 711, 1266, 1518, 4143 |
| ZrmI | AGTACT | 2 cut(s) | 1330, 1586 |
| Zsp2I | ATGCAT | 3 cut(s) | 397, 4596, 4864 |