Rw2G026000

Flavin containing amine oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
39856927 .. 39857457
531 bp
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UTR
Exon/CDS
Intron
Rw2G026000.1

Sequence Viewer

Length: 390 bp
ATGCTTCACGCCAAACCTTTTCCATCACCAGCCAACTCCACAAAATCAGATCCTCTCTCCGGTGAGCCACTTCACGACCCTACCTCTTATCGTTCCATTGTCGGTGCTCTGCAATACTTAACTTGGACTCGACCCGATATAGCCCACTCTGTTAATCAATGGGCAGGTTGCCCAATTGATCGAAGATCCACCACAGGATTTTGTATATTCTTTGGCAACAATTTAGTCTCTTGGAGTGCCAAAAAGCAATCCACTGTTGCTCGCTCTTCCACCGAAGCAGAATATCGAGCCTTGGCTCTTGCTGTTGCCGAAACACTTTGGCTCTCCTTTCTCCTTCGTGACCTTCATGTTATGTTCCAAGAGCTCCTCAATTCCTCTGTGACAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.34

Weight (kDa)

7.85

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 44, 180
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 364
AluI AGCT 1 cut(s) 364
Alw21I GWGCWC 2 cut(s) 109, 366
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 44, 180
AsuHPI GGTGA 2 cut(s) 18, 74
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 109, 366
BccI CCATC 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 109, 366
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 109, 366
Bsp143I GATC 3 cut(s) 49, 178, 185
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 44, 180
BspQI GCTCTTC 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 49, 178, 185
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 52, 181, 188
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 3 cut(s) 49, 178, 185
BstX2I RGATCY 2 cut(s) 49, 185
BstYI RGATCY 2 cut(s) 49, 185
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 262
CviAII CATG 1 cut(s) 347
CviJI RGCY 7 cut(s) 32, 67, 143, 290, 296, 322, 364
CviKI_1 RGCY 7 cut(s) 32, 67, 143, 290, 296, 322, 364
DpnI GATC 3 cut(s) 51, 180, 187
DpnII GATC 3 cut(s) 49, 178, 185
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 350
FaiI YATR 5 cut(s) 140, 206, 348, 353, 388
FatI CATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 366
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 350
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 18, 74
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 74, 338
HpyAV CCTTC 2 cut(s) 344, 353
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 112
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 3 cut(s) 49, 178, 185
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 4 cut(s) 42, 73, 150, 180
MaeIII GTNAC 2 cut(s) 338, 379
MalI GATC 3 cut(s) 51, 180, 187
MboI GATC 3 cut(s) 49, 178, 185
MboII GAAGA 2 cut(s) 195, 258
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 2 cut(s) 49, 185
MhlI GDGCHC 2 cut(s) 109, 366
MluCI AATT 3 cut(s) 174, 220, 370
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 4 cut(s) 63, 94, 377, 385
MseI TTAA 2 cut(s) 119, 153
MspI CCGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 174
NdeII GATC 3 cut(s) 49, 178, 185
NlaIII CATG 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 338, 379
PciSI GCTCTTC 1 cut(s) 271
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 366
PsuI RGATCY 2 cut(s) 49, 185
SacI GAGCTC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 119, 153
Sau3AI GATC 3 cut(s) 49, 178, 185
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 109, 366
SetI ASST 5 cut(s) 19, 86, 169, 345, 366
Sse9I AATT 3 cut(s) 174, 220, 370
SstI GAGCTC 1 cut(s) 366
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 3 cut(s) 130, 181, 286
TasI AATT 3 cut(s) 174, 220, 370
Tru1I TTAA 2 cut(s) 119, 153
Tru9I TTAA 2 cut(s) 119, 153
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 338, 379
Tsp45I GTSAC 2 cut(s) 338, 379
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.