Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 37 - 208 | 3e-16 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 365 - 443 | 6.3e-06 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 476 - 543 | 1.1e-10 | GAG-pre-integrase domain |
| rve | PF00665 | 558 - 656 | 1.3e-14 | Integrase core domain |
| SH3_retrovirus | PF25597 | 730 - 791 | 4.5e-24 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 960 - 1203 | 2.4e-70 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2217 |
| AarI | CACCTGC | 2 cut(s) | 817, 2599 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 870, 3624 |
| Acc16I | TGCGCA | 1 cut(s) | 113 |
| Acc36I | ACCTGC | 2 cut(s) | 817, 2599 |
| AccB1I | GGYRCC | 8 cut(s) | 473, 653, 1109, 1169, 3680, 4493, 4499, 4553 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2716, 3821 |
| AccI | GTMKAC | 3 cut(s) | 1652, 2541, 2940 |
| AccII | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| AccIII | TCCGGA | 1 cut(s) | 3889 |
| AclI | AACGTT | 2 cut(s) | 619, 3232 |
| AcoI | YGGCCR | 2 cut(s) | 700, 3613 |
| AcsI | RAATTY | 8 cut(s) | 43, 1179, 1598, 1831, 1892, 2858, 3298, 4376 |
| AcuI | CTGAAG | 1 cut(s) | 3833 |
| AcyI | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| AfaI | GTAC | 5 cut(s) | 382, 1235, 1915, 3511, 3988 |
| AflIII | ACRYGT | 4 cut(s) | 1489, 1952, 2314, 2804 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 796, 3045 |
| AjiI | CACGTC | 2 cut(s) | 728, 2315 |
| AjnI | CCWGG | 5 cut(s) | 320, 880, 898, 1201, 3732 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 247, 279 |
| Alw21I | GWGCWC | 3 cut(s) | 94, 3956, 4206 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 3995, 4025, 4583 |
| Ama87I | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| Aor13HI | TCCGGA | 1 cut(s) | 3889 |
| AoxI | GGCC | 7 cut(s) | 700, 1408, 1905, 2061, 2428, 3107, 3613 |
| ApoI | RAATTY | 8 cut(s) | 43, 1179, 1598, 1831, 1892, 2858, 3298, 4376 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2070 |
| AspA2I | CCTAGG | 1 cut(s) | 1618 |
| AspLEI | GCGC | 6 cut(s) | 114, 476, 1112, 3981, 4146, 4502 |
| AsuC2I | CCSGG | 2 cut(s) | 796, 3186 |
| AsuII | TTCGAA | 1 cut(s) | 1793 |
| AvaI | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| AvaII | GGWCC | 8 cut(s) | 524, 843, 872, 1199, 2553, 2635, 3415, 3473 |
| AvrII | CCTAGG | 1 cut(s) | 1618 |
| BaeGI | GKGCMC | 4 cut(s) | 966, 3449, 4312, 4535 |
| BamHI | GGATCC | 3 cut(s) | 1395, 2299, 2410 |
| BanI | GGYRCC | 8 cut(s) | 473, 653, 1109, 1169, 3680, 4493, 4499, 4553 |
| BanII | GRGCYC | 2 cut(s) | 3956, 4206 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 585, 617, 3683, 3715 |
| BauI | CACGAG | 5 cut(s) | 402, 561, 1155, 3261, 3946 |
| BbsI | GAAGAC | 5 cut(s) | 926, 1022, 1656, 2248, 3515 |
| Bbv12I | GWGCWC | 3 cut(s) | 94, 3956, 4206 |
| BbvCI | CCTCAGC | 1 cut(s) | 2511 |
| BceAI | ACGGC | 4 cut(s) | 687, 2480, 3710, 3885 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 443, 477, 2681, 2715, 2846, 2880 |
| BciT130I | CCWGG | 5 cut(s) | 322, 882, 900, 1203, 3734 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BclI | TGATCA | 1 cut(s) | 235 |
| BcnI | CCSGG | 2 cut(s) | 796, 3186 |
| BfaI | CTAG | 4 cut(s) | 1440, 1520, 1619, 3513 |
| BfmI | CTRYAG | 2 cut(s) | 4266, 4440 |
| BfoI | RGCGCY | 3 cut(s) | 477, 1113, 4503 |
| BfuAI | ACCTGC | 2 cut(s) | 817, 2599 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BlnI | CCTAGG | 1 cut(s) | 1618 |
| Bme1390I | CCNGG | 7 cut(s) | 322, 796, 882, 900, 1203, 3186, 3734 |
| Bme18I | GGWCC | 8 cut(s) | 524, 843, 872, 1199, 2553, 2635, 3415, 3473 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 796, 3045 |
| BmeT110I | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| BmgBI | CACGTC | 2 cut(s) | 728, 2315 |
| BmrFI | CCNGG | 7 cut(s) | 322, 796, 882, 900, 1203, 3186, 3734 |
| BmrI | ACTGGG | 3 cut(s) | 2025, 4393, 4518 |
| BmsI | GCATC | 6 cut(s) | 1301, 1489, 2603, 3320, 3859, 4095 |
| BmuI | ACTGGG | 3 cut(s) | 2025, 4393, 4518 |
| BoxI | GACNNNNGTC | 1 cut(s) | 183 |
| BpiI | GAAGAC | 5 cut(s) | 926, 1022, 1656, 2248, 3515 |
| BpmI | CTGGAG | 1 cut(s) | 871 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2511 |
| Bpu14I | TTCGAA | 1 cut(s) | 1793 |
| BpuEI | CTTGAG | 2 cut(s) | 2648, 3967 |
| BpuMI | CCSGG | 2 cut(s) | 796, 3186 |
| BsaHI | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| BsaI | GGTCTC | 1 cut(s) | 530 |
| BsaWI | WCCGGW | 2 cut(s) | 2039, 3889 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 13, 43, 2517, 2547, 3777, 3807 |
| Bse118I | RCCGGY | 4 cut(s) | 2550, 2632, 4496, 4556 |
| Bse3DI | GCAATG | 2 cut(s) | 1097, 3087 |
| BseAI | TCCGGA | 1 cut(s) | 3889 |
| BseBI | CCWGG | 5 cut(s) | 322, 882, 900, 1203, 3734 |
| BseGI | GGATG | 8 cut(s) | 815, 1333, 1354, 1525, 1759, 2432, 2463, 3391 |
| BseMI | GCAATG | 2 cut(s) | 1097, 3087 |
| BseMII | CTCAG | 7 cut(s) | 107, 596, 2525, 2588, 3548, 3637, 4367 |
| BseRI | GAGGAG | 9 cut(s) | 885, 913, 1012, 2148, 2469, 2499, 3249, 3686, 4213 |
| BseSI | GKGCMC | 4 cut(s) | 966, 3449, 4312, 4535 |
| BseYI | CCCAGC | 2 cut(s) | 3601, 4583 |
| BsgI | GTGCAG | 6 cut(s) | 789, 1032, 1059, 1394, 4413, 4581 |
| Bsh1236I | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| Bsh1285I | CGRYCG | 2 cut(s) | 67, 3898 |
| BshFI | GGCC | 7 cut(s) | 702, 1410, 1907, 2063, 2430, 3109, 3615 |
| BshNI | GGYRCC | 8 cut(s) | 473, 653, 1109, 1169, 3680, 4493, 4499, 4553 |
| BsiEI | CGRYCG | 2 cut(s) | 67, 3898 |
| BsiHKAI | GWGCWC | 3 cut(s) | 94, 3956, 4206 |
| BsiHKCI | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| BsmBI | CGTCTC | 4 cut(s) | 333, 360, 487, 995 |
| BsmI | GAATGC | 2 cut(s) | 3137, 3587 |
| BsnI | GGCC | 7 cut(s) | 702, 1410, 1907, 2063, 2430, 3109, 3615 |
| Bso31I | GGTCTC | 1 cut(s) | 530 |
| BsoBI | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| Bsp119I | TTCGAA | 1 cut(s) | 1793 |
| Bsp1286I | GDGCHC | 7 cut(s) | 94, 966, 3449, 3956, 4206, 4312, 4535 |
| Bsp13I | TCCGGA | 1 cut(s) | 3889 |
| Bsp19I | CCATGG | 3 cut(s) | 1462, 1930, 3820 |
| Bsp68I | TCGCGA | 1 cut(s) | 4056 |
| BspANI | GGCC | 7 cut(s) | 702, 1410, 1907, 2063, 2430, 3109, 3615 |
| BspCNI | CTCAG | 7 cut(s) | 106, 597, 2524, 2587, 3547, 3636, 4366 |
| BspEI | TCCGGA | 1 cut(s) | 3889 |
| BspFNI | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| BspHI | TCATGA | 1 cut(s) | 39 |
| BspMAI | CTGCAG | 2 cut(s) | 4270, 4444 |
| BspMI | ACCTGC | 2 cut(s) | 817, 2599 |
| BspT104I | TTCGAA | 1 cut(s) | 1793 |
| BspT107I | GGYRCC | 8 cut(s) | 473, 653, 1109, 1169, 3680, 4493, 4499, 4553 |
| BspTNI | GGTCTC | 1 cut(s) | 530 |
| BsrDI | GCAATG | 2 cut(s) | 1097, 3087 |
| BsrFI | RCCGGY | 4 cut(s) | 2550, 2632, 4496, 4556 |
| BssAI | RCCGGY | 4 cut(s) | 2550, 2632, 4496, 4556 |
| BssNAI | GTATAC | 2 cut(s) | 2542, 2941 |
| BssNI | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| BssSI | CACGAG | 5 cut(s) | 402, 561, 1155, 3261, 3946 |
| BssT1I | CCWWGG | 9 cut(s) | 276, 588, 1462, 1618, 1930, 2790, 3820, 3928, 4254 |
| Bst1107I | GTATAC | 2 cut(s) | 2542, 2941 |
| Bst2BI | CACGAG | 5 cut(s) | 402, 561, 1155, 3261, 3946 |
| Bst2UI | CCWGG | 5 cut(s) | 322, 882, 900, 1203, 3734 |
| Bst6I | CTCTTC | 6 cut(s) | 336, 642, 853, 3117, 3156, 3704 |
| BstACI | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 4092, 4436, 4568 |
| BstBI | TTCGAA | 1 cut(s) | 1793 |
| BstDSI | CCRYGG | 8 cut(s) | 697, 703, 745, 838, 1462, 1930, 3820, 4227 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4253 |
| BstF5I | GGATG | 8 cut(s) | 815, 1333, 1354, 1525, 1759, 2432, 2463, 3391 |
| BstFNI | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| BstH2I | RGCGCY | 3 cut(s) | 477, 1113, 4503 |
| BstHHI | GCGC | 6 cut(s) | 114, 476, 1112, 3981, 4146, 4502 |
| BstMCI | CGRYCG | 2 cut(s) | 67, 3898 |
| BstNI | CCWGG | 5 cut(s) | 322, 882, 900, 1203, 3734 |
| BstNSI | RCATGY | 7 cut(s) | 379, 1956, 2653, 2808, 3577, 4150, 4157 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 183 |
| BstSCI | CCNGG | 7 cut(s) | 320, 794, 880, 898, 1201, 3184, 3732 |
| BstSFI | CTRYAG | 2 cut(s) | 4266, 4440 |
| BstSLI | GKGCMC | 4 cut(s) | 966, 3449, 4312, 4535 |
| BstUI | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| BstV2I | GAAGAC | 5 cut(s) | 926, 1022, 1656, 2248, 3515 |
| BstX2I | RGATCY | 4 cut(s) | 1395, 2299, 2410, 3466 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3292, 3577 |
| BstYI | RGATCY | 4 cut(s) | 1395, 2299, 2410, 3466 |
| BstZ17I | GTATAC | 2 cut(s) | 2542, 2941 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuRI | GGCC | 7 cut(s) | 702, 1410, 1907, 2063, 2430, 3109, 3615 |
| BtgI | CCRYGG | 8 cut(s) | 697, 703, 745, 838, 1462, 1930, 3820, 4227 |
| BtgZI | GCGATG | 2 cut(s) | 433, 2861 |
| BtrI | CACGTC | 2 cut(s) | 728, 2315 |
| BtsCI | GGATG | 8 cut(s) | 815, 1333, 1354, 1525, 1759, 2432, 2463, 3391 |
| BtsI | GCAGTG | 2 cut(s) | 151, 3855 |
| BtsIMutI | CAGTG | 9 cut(s) | 151, 540, 1494, 1851, 3549, 3855, 3906, 4461, 4533 |
| BtuMI | TCGCGA | 1 cut(s) | 4056 |
| BveI | ACCTGC | 2 cut(s) | 817, 2599 |
| CaiI | CAGNNNCTG | 3 cut(s) | 3995, 4025, 4583 |
| CciI | TCATGA | 1 cut(s) | 39 |
| CfoI | GCGC | 6 cut(s) | 114, 476, 1112, 3981, 4146, 4502 |
| Cfr10I | RCCGGY | 4 cut(s) | 2550, 2632, 4496, 4556 |
| Cfr42I | CCGCGG | 1 cut(s) | 841 |
| CseI | GACGC | 4 cut(s) | 920, 2198, 2964, 3627 |
| CsiI | ACCWGGT | 1 cut(s) | 3732 |
| Csp6I | GTAC | 5 cut(s) | 381, 1234, 1914, 3510, 3987 |
| CviQI | GTAC | 5 cut(s) | 381, 1234, 1914, 3510, 3987 |
| DinI | GGCGCC | 3 cut(s) | 475, 1111, 4501 |
| DraI | TTTAAA | 3 cut(s) | 1545, 1732, 1828 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 870, 3624 |
| DriI | GACNNNNNGTC | 2 cut(s) | 796, 3045 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 870, 3624 |
| EaeI | YGGCCR | 2 cut(s) | 700, 3613 |
| Eam1104I | CTCTTC | 6 cut(s) | 336, 642, 853, 3117, 3156, 3704 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 796, 3045 |
| EarI | CTCTTC | 6 cut(s) | 336, 642, 853, 3117, 3156, 3704 |
| EciI | GGCGGA | 1 cut(s) | 4068 |
| Ecl136II | GAGCTC | 2 cut(s) | 3954, 4204 |
| Eco130I | CCWWGG | 9 cut(s) | 276, 588, 1462, 1618, 1930, 2790, 3820, 3928, 4254 |
| Eco24I | GRGCYC | 2 cut(s) | 3956, 4206 |
| Eco31I | GGTCTC | 1 cut(s) | 530 |
| Eco32I | GATATC | 1 cut(s) | 3655 |
| Eco47I | GGWCC | 8 cut(s) | 524, 843, 872, 1199, 2553, 2635, 3415, 3473 |
| Eco53kI | GAGCTC | 2 cut(s) | 3954, 4204 |
| Eco57I | CTGAAG | 1 cut(s) | 3833 |
| Eco88I | CYCGRG | 4 cut(s) | 2420, 2690, 2724, 3838 |
| EcoICRI | GAGCTC | 2 cut(s) | 3954, 4204 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4253 |
| EcoO109I | RGGNCCY | 2 cut(s) | 843, 1906 |
| EcoRI | GAATTC | 2 cut(s) | 2858, 4376 |
| EcoRII | CCWGG | 5 cut(s) | 320, 880, 898, 1201, 3732 |
| EcoRV | GATATC | 1 cut(s) | 3655 |
| EcoT14I | CCWWGG | 9 cut(s) | 276, 588, 1462, 1618, 1930, 2790, 3820, 3928, 4254 |
| EcoT22I | ATGCAT | 3 cut(s) | 3139, 3753, 4365 |
| EcoT38I | GRGCYC | 2 cut(s) | 3956, 4206 |
| EgeI | GGCGCC | 3 cut(s) | 475, 1111, 4501 |
| EheI | GGCGCC | 3 cut(s) | 475, 1111, 4501 |
| ErhI | CCWWGG | 9 cut(s) | 276, 588, 1462, 1618, 1930, 2790, 3820, 3928, 4254 |
| Esp3I | CGTCTC | 4 cut(s) | 333, 360, 487, 995 |
| FauI | CCCGC | 8 cut(s) | 833, 845, 883, 1095, 2475, 2674, 4091, 4320 |
| FbaI | TGATCA | 1 cut(s) | 235 |
| FblI | GTMKAC | 3 cut(s) | 1652, 2541, 2940 |
| FokI | GGATG | 8 cut(s) | 802, 1340, 1341, 1512, 1766, 2419, 2450, 3398 |
| FriOI | GRGCYC | 2 cut(s) | 3956, 4206 |
| FspBI | CTAG | 4 cut(s) | 1440, 1520, 1619, 3513 |
| FspI | TGCGCA | 1 cut(s) | 113 |
| GlaI | GCGC | 6 cut(s) | 113, 475, 1111, 3980, 4145, 4501 |
| GsaI | CCCAGC | 2 cut(s) | 3605, 4587 |
| GsuI | CTGGAG | 1 cut(s) | 871 |
| HaeII | RGCGCY | 3 cut(s) | 477, 1113, 4503 |
| HaeIII | GGCC | 7 cut(s) | 702, 1410, 1907, 2063, 2430, 3109, 3615 |
| HgaI | GACGC | 4 cut(s) | 920, 2198, 2964, 3627 |
| HhaI | GCGC | 6 cut(s) | 114, 476, 1112, 3981, 4146, 4502 |
| Hin1I | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| Hin6I | GCGC | 6 cut(s) | 112, 474, 1110, 3979, 4144, 4500 |
| HinP1I | GCGC | 6 cut(s) | 112, 474, 1110, 3979, 4144, 4500 |
| HincII | GTYRAC | 6 cut(s) | 188, 442, 953, 2854, 3730, 4165 |
| HindII | GTYRAC | 6 cut(s) | 188, 442, 953, 2854, 3730, 4165 |
| HindIII | AAGCTT | 3 cut(s) | 594, 1866, 2067 |
| HpaI | GTTAAC | 1 cut(s) | 3730 |
| Hpy99I | CGWCG | 4 cut(s) | 1805, 2958, 3621, 4121 |
| HpyAV | CCTTC | 9 cut(s) | 110, 843, 1001, 1539, 2526, 3152, 3457, 3857, 4291 |
| Hsp92I | GRCGYC | 6 cut(s) | 5, 474, 931, 1110, 3619, 4500 |
| HspAI | GCGC | 6 cut(s) | 112, 474, 1110, 3979, 4144, 4500 |
| KasI | GGCGCC | 3 cut(s) | 473, 1109, 4499 |
| Kpn2I | TCCGGA | 1 cut(s) | 3889 |
| KroI | GCCGGC | 1 cut(s) | 4496 |
| KroNI | GCCGGC | 1 cut(s) | 4498 |
| Ksp22I | TGATCA | 1 cut(s) | 235 |
| KspAI | GTTAAC | 1 cut(s) | 3730 |
| KspI | CCGCGG | 1 cut(s) | 841 |
| LmnI | GCTCC | 8 cut(s) | 34, 790, 890, 3262, 3951, 3959, 4081, 4580 |
| LweI | GCATC | 6 cut(s) | 1301, 1489, 2603, 3320, 3859, 4095 |
| MabI | ACCWGGT | 1 cut(s) | 3732 |
| MaeI | CTAG | 4 cut(s) | 1440, 1520, 1619, 3513 |
| MfeI | CAATTG | 2 cut(s) | 2970, 3103 |
| MflI | RGATCY | 4 cut(s) | 1395, 2299, 2410, 3466 |
| MhlI | GDGCHC | 7 cut(s) | 94, 966, 3449, 3956, 4206, 4312, 4535 |
| Mly113I | GGCGCC | 3 cut(s) | 474, 1110, 4500 |
| MlyI | GAGTC | 4 cut(s) | 785, 1097, 1223, 1419 |
| MmeI | TCCRAC | 6 cut(s) | 516, 1824, 2460, 3586, 4373, 4428 |
| Mph1103I | ATGCAT | 3 cut(s) | 3139, 3753, 4365 |
| MroI | TCCGGA | 1 cut(s) | 3889 |
| MroNI | GCCGGC | 1 cut(s) | 4496 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2070 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1692, 3572 |
| MspA1I | CMGCKG | 5 cut(s) | 840, 1046, 1073, 4025, 4237 |
| MspR9I | CCNGG | 7 cut(s) | 322, 796, 882, 900, 1203, 3186, 3734 |
| MunI | CAATTG | 2 cut(s) | 2970, 3103 |
| Mva1269I | GAATGC | 2 cut(s) | 3137, 3587 |
| MvaI | CCWGG | 5 cut(s) | 322, 882, 900, 1203, 3734 |
| MvnI | CGCG | 4 cut(s) | 687, 840, 3979, 4056 |
| NaeI | GCCGGC | 1 cut(s) | 4498 |
| NarI | GGCGCC | 3 cut(s) | 474, 1110, 4500 |
| NciI | CCSGG | 2 cut(s) | 796, 3186 |
| NcoI | CCATGG | 3 cut(s) | 1462, 1930, 3820 |
| NgoMIV | GCCGGC | 1 cut(s) | 4496 |
| NmeAIII | GCCGAG | 3 cut(s) | 637, 947, 2011 |
| NmuCI | GTSAC | 7 cut(s) | 563, 1226, 1442, 1492, 2659, 4189, 4448 |
| NruI | TCGCGA | 1 cut(s) | 4056 |
| NsbI | TGCGCA | 1 cut(s) | 113 |
| NsiI | ATGCAT | 3 cut(s) | 3139, 3753, 4365 |
| NspI | RCATGY | 7 cut(s) | 379, 1956, 2653, 2808, 3577, 4150, 4157 |
| NspV | TTCGAA | 1 cut(s) | 1793 |
| PaeI | GCATGC | 1 cut(s) | 4150 |
| PaeR7I | CTCGAG | 3 cut(s) | 2420, 2724, 3838 |
| PagI | TCATGA | 1 cut(s) | 39 |
| PaqCI | CACCTGC | 2 cut(s) | 817, 2599 |
| PciI | ACATGT | 2 cut(s) | 1952, 2804 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 450, 724, 1983, 3793 |
| PctI | GAATGC | 2 cut(s) | 3137, 3587 |
| PdiI | GCCGGC | 1 cut(s) | 4498 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2070 |
| PflFI | GACNNNGTC | 3 cut(s) | 200, 437, 497 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2716, 3821 |
| Ple19I | CGATCG | 1 cut(s) | 3898 |
| PleI | GAGTC | 4 cut(s) | 785, 1097, 1223, 1419 |
| PluTI | GGCGCC | 3 cut(s) | 477, 1113, 4503 |
| PpsI | GAGTC | 4 cut(s) | 785, 1097, 1223, 1419 |
| PpuMI | RGGWCCY | 1 cut(s) | 843 |
| PscI | ACATGT | 2 cut(s) | 1952, 2804 |
| PshAI | GACNNNNGTC | 1 cut(s) | 183 |
| PsiI | TTATAA | 1 cut(s) | 2217 |
| Psp124BI | GAGCTC | 2 cut(s) | 3956, 4206 |
| Psp1406I | AACGTT | 2 cut(s) | 619, 3232 |
| Psp5II | RGGWCCY | 1 cut(s) | 843 |
| Psp6I | CCWGG | 5 cut(s) | 320, 880, 898, 1201, 3732 |
| PspFI | CCCAGC | 2 cut(s) | 3601, 4583 |
| PspGI | CCWGG | 5 cut(s) | 320, 880, 898, 1201, 3732 |
| PspPPI | RGGWCCY | 1 cut(s) | 843 |
| PspXI | VCTCGAGB | 2 cut(s) | 2724, 3838 |
| PstI | CTGCAG | 2 cut(s) | 4270, 4444 |
| PstNI | CAGNNNCTG | 3 cut(s) | 3995, 4025, 4583 |
| PsuI | RGATCY | 4 cut(s) | 1395, 2299, 2410, 3466 |
| PsyI | GACNNNGTC | 3 cut(s) | 200, 437, 497 |
| PvuI | CGATCG | 1 cut(s) | 3898 |
| PvuII | CAGCTG | 2 cut(s) | 1046, 4237 |
| RruI | TCGCGA | 1 cut(s) | 4056 |
| RsaI | GTAC | 5 cut(s) | 382, 1235, 1915, 3511, 3988 |
| RsaNI | GTAC | 5 cut(s) | 381, 1234, 1914, 3510, 3987 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1692, 3572 |
| SacI | GAGCTC | 2 cut(s) | 3956, 4206 |
| SacII | CCGCGG | 1 cut(s) | 841 |
| SchI | GAGTC | 4 cut(s) | 785, 1097, 1223, 1419 |
| ScrFI | CCNGG | 7 cut(s) | 322, 796, 882, 900, 1203, 3186, 3734 |
| SduI | GDGCHC | 7 cut(s) | 94, 966, 3449, 3956, 4206, 4312, 4535 |
| SexAI | ACCWGGT | 1 cut(s) | 3732 |
| SfaNI | GCATC | 6 cut(s) | 1301, 1489, 2603, 3320, 3859, 4095 |
| SfcI | CTRYAG | 2 cut(s) | 4266, 4440 |
| SfoI | GGCGCC | 3 cut(s) | 475, 1111, 4501 |
| Sfr274I | CTCGAG | 3 cut(s) | 2420, 2724, 3838 |
| Sfr303I | CCGCGG | 1 cut(s) | 841 |
| SfuI | TTCGAA | 1 cut(s) | 1793 |
| SgrBI | CCGCGG | 1 cut(s) | 841 |
| SinI | GGWCC | 8 cut(s) | 524, 843, 872, 1199, 2553, 2635, 3415, 3473 |
| SlaI | CTCGAG | 3 cut(s) | 2420, 2724, 3838 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1692, 3572 |
| SmlI | CTYRAG | 5 cut(s) | 2420, 2627, 2724, 3838, 3982 |
| SmoI | CTYRAG | 5 cut(s) | 2420, 2627, 2724, 3838, 3982 |
| SphI | GCATGC | 1 cut(s) | 4150 |
| SspDI | GGCGCC | 3 cut(s) | 473, 1109, 4499 |
| SspI | AATATT | 2 cut(s) | 1736, 2920 |
| SspMI | CTAG | 4 cut(s) | 1440, 1520, 1619, 3513 |
| SstI | GAGCTC | 2 cut(s) | 3956, 4206 |
| StyD4I | CCNGG | 7 cut(s) | 320, 794, 880, 898, 1201, 3184, 3732 |
| StyI | CCWWGG | 9 cut(s) | 276, 588, 1462, 1618, 1930, 2790, 3820, 3928, 4254 |
| TatI | WGTACW | 2 cut(s) | 1913, 3986 |
| TauI | GCSGC | 5 cut(s) | 120, 654, 3178, 4025, 4153 |
| TscAI | CASTG | 9 cut(s) | 158, 547, 1501, 1858, 3556, 3862, 3913, 4468, 4540 |
| TseFI | GTSAC | 7 cut(s) | 563, 1226, 1442, 1492, 2659, 4189, 4448 |
| Tsp45I | GTSAC | 7 cut(s) | 563, 1226, 1442, 1492, 2659, 4189, 4448 |
| TspRI | CASTG | 9 cut(s) | 158, 547, 1501, 1858, 3556, 3862, 3913, 4468, 4540 |
| Tth111I | GACNNNGTC | 3 cut(s) | 200, 437, 497 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2716, 3821 |
| VpaK11BI | GGWCC | 8 cut(s) | 524, 843, 872, 1199, 2553, 2635, 3415, 3473 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4253 |
| XapI | RAATTY | 8 cut(s) | 43, 1179, 1598, 1831, 1892, 2858, 3298, 4376 |
| XceI | RCATGY | 7 cut(s) | 379, 1956, 2653, 2808, 3577, 4150, 4157 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4234 |
| XhoI | CTCGAG | 3 cut(s) | 2420, 2724, 3838 |
| XmaJI | CCTAGG | 1 cut(s) | 1618 |
| XmiI | GTMKAC | 3 cut(s) | 1652, 2541, 2940 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2070 |
| XspI | CTAG | 4 cut(s) | 1440, 1520, 1619, 3513 |
| Zsp2I | ATGCAT | 3 cut(s) | 3139, 3753, 4365 |