pycom17g24840

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000889
Physical Location & Seq
Forward (+)
23031620 .. 23031868
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g24840.1

Sequence Viewer

Length: 249 bp
ATGTCCCTTTTCTGTGACAATCAGGCTGCAATGCACATTGCTTCCAACCCAGTTTTTCATGAGAGAACCAAGCACATTGAAGTCGATTGTCACTATGTTCGTACACAAGTTCAATCTCAGGTTATCCAAACGCATTTTGTAAGGAGCTCGAATCAACTTGCGGACCTATTCACAAAATCATTGGTCTCTCATCAGTTTCAGCTTCTTCTTGGCAAGCTTGGATCTATCAACCTTTTGGATCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_8 Exo_endo_phos

Protein Analysis

83

Amino Acids

9.3

Weight (kDa)

7.01

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AclWI GGATC 3 cut(s) 229, 233, 246
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 80, 113
AluBI AGCT 4 cut(s) 147, 202, 217, 245
AluI AGCT 4 cut(s) 147, 202, 217, 245
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 3 cut(s) 229, 233, 246
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 2 cut(s) 36, 36
BseMI GCAATG 2 cut(s) 36, 36
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 190
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 221, 238
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 3 cut(s) 229, 233, 246
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 36, 36
BsrI ACTGG 1 cut(s) 50
BssMI GATC 2 cut(s) 221, 238
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 117
BstKTI GATC 2 cut(s) 224, 241
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 221, 238
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 221, 238
BstYI RGATCY 2 cut(s) 221, 238
Cac8I GCNNGC 1 cut(s) 215
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 59
CviJI RGCY 5 cut(s) 26, 147, 202, 217, 245
CviKI_1 RGCY 5 cut(s) 26, 147, 202, 217, 245
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 223, 240
DpnII GATC 2 cut(s) 221, 238
Ecl136II GAGCTC 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 1 cut(s) 62
FaiI YATR 2 cut(s) 60, 96
FatI CATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 29, 34
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 221, 238
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 3 cut(s) 8, 63, 104
Lsp1109I GCAGC 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 14, 89
MalI GATC 2 cut(s) 223, 240
MboI GATC 2 cut(s) 221, 238
MboII GAAGA 1 cut(s) 197
MflI RGATCY 2 cut(s) 221, 238
MhlI GDGCHC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 69
NdeII GATC 2 cut(s) 221, 238
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 14, 89
PagI TCATGA 1 cut(s) 58
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 2 cut(s) 221, 238
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SacI GAGCTC 1 cut(s) 149
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 221, 238
Sau96I GGNCC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 149
SetI ASST 7 cut(s) 123, 149, 168, 204, 219, 234, 247
SinI GGWCC 1 cut(s) 163
SsiI CCGC 1 cut(s) 161
SstI GAGCTC 1 cut(s) 149
TaqI TCGA 2 cut(s) 84, 149
TfiI GAWTC 1 cut(s) 151
TseFI GTSAC 2 cut(s) 14, 89
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 2 cut(s) 14, 89
TspDTI ATGAA 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.