Rw6G031570

Flavin containing amine oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000889
Physical Location & Seq
Reverse (-)
55633455 .. 55634733
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G031570.1

Sequence Viewer

Length: 708 bp
ATGATTGGTGCCAAGCCTTGCACAACTCTATCTTCATCTTCCAAACTGGATCTCTCTGGTACTCCTCTTTCTAATCCTACCAAGTATCGATCATTAGTTGGTGCTTTACAATACTTAACCTGGACTAGGCCAGATATTTCTTTTGCTGTTGGACAACTTTGTCAGTTCATGCACGCCCCTCAAGACATTCACCTACAAGCTGCTAAGCGTGTTCTACGATACCTCAAGGGTACACTACATCACAGTCTTCAATTCTCCAAAGGAGACCTTGTTCTACATGGTTATTCTGATGCTGATTGGGCAGGCTGCCCTATTGATCGCCGTTCCATCACTGGCTATTGTATCTTCCTAGGCTCCAATCTTATCTCTTGGTCCTCCAAGAAACAACACACTGTCTCTCGATCTTCTACAGAGTCTGAATATAGTGCCTTGGCTCAGGCTGCTACTGAAGTTGTCTGGATCTGCAAACTGCTTCGTGACCATCACTTTCATATTGATATGGACTACCACTACATCCGTGAAATGGTTCTCAGCAAGTTCATCCATGTATCTTATCTGTCCACCCTGCATCAACCTGCTGATCTCTTCACCAAGGAACAATCAGCTTCTGGGAACGGTTTTGAGGAGACATTCTTGCATCATTCCAGCTGCATCTATGCAGAAAGGGCCAGAGAAACTCGAAGATATGATTTTATACTTCAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Amino_oxidase NAD_binding_8

Protein Analysis

235

Amino Acids

26.72

Weight (kDa)

8.49

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 8
AclWI GGATC 2 cut(s) 57, 467
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 61, 232
AfiI CCNNNNNNNGG 2 cut(s) 126, 523
AgsI TTSAA 2 cut(s) 251, 701
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 3 cut(s) 200, 605, 648
AluI AGCT 3 cut(s) 200, 605, 648
Alw26I GTCTC 3 cut(s) 258, 400, 620
AlwI GGATC 2 cut(s) 57, 467
AlwNI CAGNNNCTG 2 cut(s) 416, 608
AoxI GGCC 2 cut(s) 128, 666
ApeKI GCWGC 4 cut(s) 200, 306, 440, 648
Asp700I GAANNNNTTC 1 cut(s) 525
AspA2I CCTAGG 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 372, 666
AsuHPI GGTGA 2 cut(s) 182, 580
AvaII GGWCC 1 cut(s) 372
AvrII CCTAGG 1 cut(s) 349
BanI GGYRCC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 187, 293, 427, 635
BccI CCATC 2 cut(s) 335, 489
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 258, 400, 620
BfaI CTAG 2 cut(s) 126, 350
BfmI CTRYAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 4 cut(s) 201, 307, 441, 649
BlnI CCTAGG 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 4 cut(s) 202, 308, 442, 650
Bme1390I CCNGG 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 372, 666
BmiI GGNNCC 2 cut(s) 10, 355
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 4 cut(s) 280, 577, 646, 660
BpiI GAAGAC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 165, 209
Bsa29I ATCGAT 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 349, 429, 591
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 523
Bse1I ACTGG 2 cut(s) 51, 337
BseBI CCWGG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 3 cut(s) 349, 429, 591
BseGI GGATG 2 cut(s) 513, 540
BseLI CCNNNNNNNGG 2 cut(s) 126, 523
BseMII CTCAG 2 cut(s) 449, 544
BseNI ACTGG 2 cut(s) 51, 337
BseRI GAGGAG 2 cut(s) 54, 638
BseXI GCAGC 4 cut(s) 187, 293, 427, 635
BshFI GGCC 2 cut(s) 130, 668
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 126, 523
BsmAI GTCTC 3 cut(s) 258, 400, 620
BsnI GGCC 2 cut(s) 130, 668
Bso31I GGTCTC 1 cut(s) 258
Bsp143I GATC 6 cut(s) 49, 89, 316, 401, 459, 580
Bsp1720I GCTNAGC 1 cut(s) 204
BspANI GGCC 2 cut(s) 130, 668
BspCNI CTCAG 2 cut(s) 448, 543
BspDI ATCGAT 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 10, 355
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 2 cut(s) 57, 467
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 258
BsrI ACTGG 2 cut(s) 51, 337
BssECI CCNNGG 3 cut(s) 349, 429, 591
BssMI GATC 6 cut(s) 49, 89, 316, 401, 459, 580
BssT1I CCWWGG 3 cut(s) 349, 429, 591
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 245, 394, 617
Bst6I CTCTTC 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 174, 304
BstDEI CTNAG 3 cut(s) 204, 435, 530
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 513, 540
BstKTI GATC 6 cut(s) 52, 92, 319, 404, 462, 583
BstMAI GTCTC 3 cut(s) 258, 400, 620
BstMBI GATC 6 cut(s) 49, 89, 316, 401, 459, 580
BstMWI GCNNNNNNNGC 3 cut(s) 299, 440, 665
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 4 cut(s) 187, 293, 427, 635
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 49, 459
BstYI RGATCY 2 cut(s) 49, 459
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 2 cut(s) 130, 668
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 2 cut(s) 513, 540
BtsIMutI CAGTG 2 cut(s) 330, 390
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 174, 304
CaiI CAGNNNCTG 2 cut(s) 416, 608
Cfr13I GGNCC 2 cut(s) 372, 666
ClaI ATCGAT 1 cut(s) 88
Csp6I GTAC 2 cut(s) 60, 231
CviAII CATG 3 cut(s) 169, 278, 545
CviQI GTAC 2 cut(s) 60, 231
DdeI CTNAG 3 cut(s) 204, 435, 530
DpnI GATC 6 cut(s) 51, 91, 318, 403, 461, 582
DpnII GATC 6 cut(s) 49, 89, 316, 401, 459, 580
DrdI GACNNNNNNGTC 1 cut(s) 159
DseDI GACNNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Eco130I CCWWGG 3 cut(s) 349, 429, 591
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 3 cut(s) 349, 429, 591
ErhI CCWWGG 3 cut(s) 349, 429, 591
FaeI CATG 3 cut(s) 172, 281, 548
FaiI YATR 9 cut(s) 170, 279, 423, 492, 500, 546, 657, 687, 695
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 3 cut(s) 168, 277, 544
Fnu4HI GCNGC 4 cut(s) 201, 307, 441, 649
FokI GGATG 2 cut(s) 500, 527
Fsp4HI GCNGC 4 cut(s) 201, 307, 441, 649
FspBI CTAG 2 cut(s) 126, 350
GluI GCNGC 4 cut(s) 201, 307, 441, 649
HaeIII GGCC 2 cut(s) 130, 668
Hin1II CATG 3 cut(s) 172, 281, 548
HinfI GANTC 1 cut(s) 413
HphI GGTGA 2 cut(s) 182, 580
Hpy166II GTNNAC 2 cut(s) 233, 561
Hpy188I TCNGA 2 cut(s) 289, 418
Hpy188III TCNNGA 4 cut(s) 182, 399, 457, 476
Hpy8I GTNNAC 2 cut(s) 233, 561
HpyCH4III ACNGT 3 cut(s) 245, 394, 617
HpyCH4V TGCA 7 cut(s) 21, 172, 465, 568, 637, 651, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 440, 665
HpyF3I CTNAG 3 cut(s) 204, 435, 530
Hsp92II CATG 3 cut(s) 172, 281, 548
Kzo9I GATC 6 cut(s) 49, 89, 316, 401, 459, 580
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 4 cut(s) 187, 293, 427, 635
LweI GCATC 4 cut(s) 280, 577, 646, 660
MaeI CTAG 2 cut(s) 126, 350
MaeIII GTNAC 1 cut(s) 476
MalI GATC 6 cut(s) 51, 91, 318, 403, 461, 582
MboI GATC 6 cut(s) 49, 89, 316, 401, 459, 580
MboII GAAGA 7 cut(s) 24, 30, 239, 337, 396, 577, 693
MflI RGATCY 2 cut(s) 49, 459
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 5 cut(s) 75, 189, 233, 385, 616
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 299, 440, 665
NdeII GATC 6 cut(s) 49, 89, 316, 401, 459, 580
NlaIII CATG 3 cut(s) 172, 281, 548
NlaIV GGNNCC 2 cut(s) 10, 355
NmuCI GTSAC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 525
PkrI GCNGC 4 cut(s) 202, 308, 442, 650
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 10, 355
PspPI GGNCC 2 cut(s) 372, 666
PstNI CAGNNNCTG 2 cut(s) 416, 608
PsuI RGATCY 2 cut(s) 49, 459
PvuII CAGCTG 1 cut(s) 648
RsaI GTAC 2 cut(s) 61, 232
RsaNI GTAC 2 cut(s) 60, 231
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 4 cut(s) 201, 307, 441, 649
Sau3AI GATC 6 cut(s) 49, 89, 316, 401, 459, 580
Sau96I GGNCC 2 cut(s) 372, 666
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 121
SetI ASST 8 cut(s) 122, 195, 202, 225, 270, 577, 607, 650
SfaNI GCATC 4 cut(s) 280, 577, 646, 660
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 180, 224
SmoI CTYRAG 2 cut(s) 180, 224
Sse9I AATT 1 cut(s) 251
SspMI CTAG 2 cut(s) 126, 350
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 3 cut(s) 349, 429, 591
TaaI ACNGT 3 cut(s) 245, 394, 617
TaqI TCGA 3 cut(s) 88, 400, 679
TasI AATT 1 cut(s) 251
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 337, 397
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 4 cut(s) 200, 306, 440, 648
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 4 cut(s) 24, 157, 479, 529
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 337, 397
VpaK11BI GGWCC 1 cut(s) 372
XagI CCTNNNNNAGG 1 cut(s) 124
XmaJI CCTAGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 126, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.