Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000889

Physical Location & Seq

Genomic Coordinates Reverse (-)

1453536 .. 1457459

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTGGATTTGAAAGCTATCAAAGGGAAGAGTGAAGCGTCTCAAATCTTGCGCTTCTACGGCATTGAAGGTAGAGATCTCTCAAAGGGTAATGTTCCTTTGACTAAGACTAAGGAAACTAGAGGTAAATTTGGTGTTGCTTTACATGTTGCTAACTTTACTGGTGGTGACACTTGGATAATTGATTCTGGGGCGTCAGATCATATGACCTATGATAAATCGTTCTTTGTGTCCATGTCATCTTCGTCTATCTCTCATGTCTCAAATGCAAATGGTGCATCTTTTCCAGTTTTAGGTATTGGGTCTGTTCAGGCTGCTATTGAAATTGCTCACAATCCTGTTCAACATGATCGCACAAAGCACGTGGAGGTAGATCGACATTTCATTAAAGAGAAGTTGGATGGTCAGATTATTTTCTTTCCTTTTGTTCCTTCTGAAGAACAATTAGCTGATATCCTTACGAAAGCTCTCTTAAGTAAAGCCTTTCATGACTCTCTTGACAAGTTGGGCATTGGTGATTTGTATGCGCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

179

Amino Acids

19.39

Weight (kDa)

6.43

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	59 - 108	5.8e-12	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00820
fragaria_vesca	FvH4_2g11011 FvH4_2g23061 FvH4_3g33302 FvH4_4g01631 FvH4_5g39270 FvH4_6g33903
malus_domestica	MD00G1024600.v1.1 MD00G1084700.v1.1 MD02G1303700.v1.1 MD03G1056000.v1.1 MD04G1231400.v1.1 MD05G1050400.v1.1 MD09G1100700.v1.1 MD09G1214100.v1.1 MD11G1146000.v1.1 MD11G1197500.v1.1 MD12G1020900.v1.1 MD12G1052500.v1.1 MD12G1175300.v1.1 MD12G1185900.v1.1 MD13G1050200.v1.1 MD13G1157100.v1.1 MD14G1109000.v1.1 MD14G1189500.v1.1 MD14G1225200.v1.1 MD16G1247000.v1.1 MD16G1278000.v1.1 MD17G1115400.v1.1 MD17G1248200.v1.1
pyrus_communis	pycom02g18580 pycom03g02970 pycom03g07840 pycom05g12390 pycom05g14310 pycom07g14010 pycom07g17390 pycom08g03700 pycom08g03730 pycom12g14660 pycom14g19040 pycom15g04630 pycom15g35310 pycom17g24840 pycom520g01050
rosa_chinensis	RchiOBHm_Chr2g0093581 RchiOBHm_Chr2g0139021 RchiOBHm_Chr2g0153961 RchiOBHm_Chr3g0454851 RchiOBHm_Chr3g0479941 RchiOBHm_Chr5g0074721 RchiOBHm_Chr7g0182831 RchiOBHm_Chr7g0210861 RchiOBHm_Chr7g0238261
rosa_roxburghii	Rroxscaffold_1G00010990 Rroxscaffold_1G00042070 Rroxscaffold_2G00082160 Rroxscaffold_3G00266700
rosa_wichuraiana	Rw1G002370 Rw2G026000 Rw3G024450 Rw4G009390 Rw5G000900 Rw5G015970 Rw6G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflII	CTTAAG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	13, 68, 323, 344
AluBI	AGCT	3 cut(s)	17, 449, 467
AluI	AGCT	3 cut(s)	17, 449, 467
Alw26I	GTCTC	2 cut(s)	45, 265
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	54, 529
AsuHPI	GGTGA	2 cut(s)	179, 527
BbrPI	CACGTG	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	45, 265
BfaI	CTAG	1 cut(s)	120
BfrI	CTTAAG	1 cut(s)	472
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	166, 287
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	166, 287
BseXI	GCAGC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	45, 265
BsmBI	CGTCTC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	76, 199, 349, 373
BspHI	TCATGA	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	166, 287
BssMI	GATC	4 cut(s)	76, 199, 349, 373
BssNI	GRCGYC	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	105, 111
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	54, 529
BstKTI	GATC	4 cut(s)	79, 202, 352, 376
BstMAI	GTCTC	2 cut(s)	45, 265
BstMBI	GATC	4 cut(s)	76, 199, 349, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 275
BstNSI	RCATGY	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	54, 529
CseI	GACGC	2 cut(s)	27, 183
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	5 cut(s)	146, 235, 257, 347, 488
CviJI	RGCY	5 cut(s)	17, 314, 449, 467, 482
CviKI_1	RGCY	5 cut(s)	17, 314, 449, 467, 482
DdeI	CTNAG	2 cut(s)	105, 111
DpnI	GATC	4 cut(s)	78, 201, 351, 375
DpnII	GATC	4 cut(s)	76, 199, 349, 373
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	456
Eco72I	CACGTG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	5 cut(s)	149, 238, 260, 350, 491
FaiI	YATR	9 cut(s)	147, 204, 206, 213, 236, 258, 348, 489, 525
FatI	CATG	5 cut(s)	145, 234, 256, 346, 487
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	2 cut(s)	53, 528
GluI	GCNGC	1 cut(s)	315
HgaI	GACGC	2 cut(s)	27, 183
HhaI	GCGC	2 cut(s)	54, 529
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	149, 238, 260, 350, 491
Hin6I	GCGC	2 cut(s)	52, 527
HinP1I	GCGC	2 cut(s)	52, 527
HinfI	GANTC	2 cut(s)	185, 491
HphI	GGTGA	2 cut(s)	179, 527
Hpy188I	TCNGA	3 cut(s)	199, 408, 436
Hpy188III	TCNNGA	2 cut(s)	488, 497
HpyAV	CCTTC	2 cut(s)	62, 441
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	269, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 275
HpyF3I	CTNAG	2 cut(s)	105, 111
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	5 cut(s)	149, 238, 260, 350, 491
HspAI	GCGC	2 cut(s)	52, 527
Kzo9I	GATC	4 cut(s)	76, 199, 349, 373
LpnPI	CCDG	5 cut(s)	147, 174, 296, 300, 351
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	78, 201, 351, 375
MboI	GATC	4 cut(s)	76, 199, 349, 373
MboII	GAAGA	3 cut(s)	40, 234, 449
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	4 cut(s)	128, 180, 324, 443
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	2 cut(s)	116, 361
MseI	TTAA	3 cut(s)	387, 473, 535
MspCI	CTTAAG	1 cut(s)	472
MwoI	GCNNNNNNNGC	2 cut(s)	60, 275
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	4 cut(s)	76, 199, 349, 373
NlaIII	CATG	5 cut(s)	149, 238, 260, 350, 491
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	487
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	485
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	364
PscI	ACATGT	1 cut(s)	145
PspCI	CACGTG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	387, 473, 535
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	76, 199, 349, 373
SchI	GAGTC	1 cut(s)	485
SetI	ASST	9 cut(s)	19, 73, 127, 212, 298, 366, 372, 451, 469
SfaNI	GCATC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	4 cut(s)	128, 180, 324, 443
SspMI	CTAG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	128, 180, 324, 443
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	387, 473, 535
Tru9I	TTAA	3 cut(s)	387, 473, 535
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	373, 476
Vha464I	CTTAAG	1 cut(s)	472
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.