FvH4_5g39270

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000889
Physical Location & Seq
Forward (+)
29010918 .. 29011882
965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39270.t1

Sequence Viewer

Length: 486 bp
ATGCTCTTCTTCCAAACAAATGGGTCTATCGCTCTGCTGCGATTAATGTTGGGCATTGAGGTAGAACGGTCTTCTAAAGGTCTGGCCCTCACTCAAACCAAATACACCATGGACCTTCGTCATTGCACCAACATGCTGGATGCTTCTCCTATGTCTACACCATCGAGTGGGAAAAGATTAAGCATCACAGATGGCACCTCTCTACCAGATGGCACTCAATATCGGAGCGTTGTGGGTGCTCTACAATATTTAGCACTTACACGTCCTGATATCTCATATGCCGTCAATCAGGTATGCCAGTTTCTGCATTCTCCCACCAATGTTCATTGGGTAGCTGTCAAGCGTATTTTGCACTATCTCAAACATACACCTACATGTGGGTTATGTTACACTCCTAGTAGCCTTCACTTGATTGGATATAGTGATTCTGATTATGCTGGAGATTTGGATACCCGAATTTCTACTGGCGGCACTTGCAACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

162

Amino Acids

17.66

Weight (kDa)

8.3

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 155
AciI CCGC 1 cut(s) 468
AcsI RAATTY 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 167, 377
AflIII ACRYGT 2 cut(s) 260, 374
AjiI CACGTC 1 cut(s) 263
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 304
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 456
AseI ATTAAT 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 85, 112
AvaII GGWCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 24
BccI CCATC 3 cut(s) 169, 185, 203
BceAI ACGGC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 442
BfaI CTAG 1 cut(s) 396
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 2 cut(s) 38, 469
BlsI GCNGC 2 cut(s) 39, 470
Bme18I GGWCC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 85, 112
BmiI GGNNCC 1 cut(s) 196
BmsI GCATC 2 cut(s) 130, 192
BoxI GACNNNNGTC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 377
Bse1I ACTGG 2 cut(s) 298, 469
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 167, 377
BseMI GCAATG 1 cut(s) 121
BseNI ACTGG 2 cut(s) 298, 469
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 167, 377
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 241
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 468
BspANI GGCC 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 2 cut(s) 298, 469
BssECI CCNNGG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 349, 474
BstNSI RCATGY 2 cut(s) 136, 378
BstPAI GACNNNNGTC 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 63
BstXI CCANNNNNNTGG 2 cut(s) 20, 136
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 304
Cfr13I GGNCC 2 cut(s) 85, 112
CviAII CATG 3 cut(s) 109, 133, 375
CviJI RGCY 3 cut(s) 86, 335, 402
CviKI_1 RGCY 3 cut(s) 86, 335, 402
DdeI CTNAG 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 108
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 3 cut(s) 112, 136, 378
FatI CATG 3 cut(s) 108, 132, 374
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 38, 469
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 38, 469
FspBI CTAG 1 cut(s) 396
GluI GCNGC 2 cut(s) 38, 469
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 3 cut(s) 112, 136, 378
HinfI GANTC 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 225, 430
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 125, 413
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 4 cut(s) 126, 307, 352, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 474
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 3 cut(s) 112, 136, 378
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 8 cut(s) 68, 122, 219, 275, 279, 311, 423, 450
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 130, 192
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 386
MboII GAAGA 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 456
MnlI CCTC 3 cut(s) 52, 98, 208
MseI TTAA 2 cut(s) 44, 179
MslI CAYNNNNRTG 2 cut(s) 131, 373
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 349, 474
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 277
NlaIII CATG 3 cut(s) 112, 136, 378
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 2 cut(s) 136, 378
PciI ACATGT 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 11
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 2 cut(s) 39, 470
PscI ACATGT 1 cut(s) 374
PshAI GACNNNNGTC 1 cut(s) 117
PshBI ATTAAT 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 85, 112
PstNI CAGNNNCTG 1 cut(s) 304
RseI CAYNNNNRTG 2 cut(s) 131, 373
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 44, 179
SatI GCNGC 2 cut(s) 38, 469
Sau96I GGNCC 2 cut(s) 85, 112
SduI GDGCHC 1 cut(s) 241
SetI ASST 8 cut(s) 63, 82, 117, 200, 265, 294, 337, 373
SfaNI GCATC 2 cut(s) 130, 192
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 131, 373
Sse9I AATT 1 cut(s) 456
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 248
SspMI CTAG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 456
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 44, 179
Tru9I TTAA 2 cut(s) 44, 179
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 314
Van91I CCANNNNNTGG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 1 cut(s) 456
XceI RCATGY 2 cut(s) 136, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.