pycom08g03730
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
2875398 .. 2878069
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03730.3

Sequence Viewer

Length: 1746 bp
ATGCAAAGCCAAATACAAGTGACTGAGCTGAAGAAAAAAAGAGCAAGTAAAACCTTTTGTATCGTACTTATAAAAGTGTTTAATTGTCAAAAAATGAAAATTACAATAATTTTTTTTGTAATTTTCAAGTTGTTAAAAAAAACATGTAGACAGGATTATGGTTCAATGGGTAAACAGTTATTGTTAAATAGGCACACGAAATATAATCGTTTATGCAATTACCCAATTAATAAACGGTTATACAGATATAAACATAAACGATTATGGATAAATAACTGCGATTACCCGTCTGTCATACCGGATGAGCATCTCAAGTGGCGTTGCAGGTCAATTAAAGTAAAGTTAGTAGTTGGTGTGCTGTCATATTCTGTCTTTCATTACCCTACCATTTATAAACGACAAGCGTTCAACTATTACTTGGTAATTTGTATTCAAACACTAGAATTTTCACATTATACCCATCATCATAAATTATATGTTAAAATAATTTCTAATTCCAAATCTCTATTTTTAAAGTTTATGTCGGCACCGCTTGTAAACATTTGTTCATTAATCATTTGCATCGTCTTCCATAGAAAAAAAATGAAAACTAAAAAAAAGAGCTTGAAAACTTTGAGTATTAATGATAAGGATAAAATAAAGGATAAAATGAATAGTATCAGGTTTGACTTTTTAATTTTTTCGTTAAAACTCTCTAGAAAAAACACTAGATCTGGTTTTACTTTTTTTTTTTTTTTTTGTAAGTGGTCTTTTTTTTTTTTTTTGGTAAAAATATTATATTTTATAACGTCATATAAATTTATACACTATTTTAAAATTAAAATTTATAACGACTTTGTGCAGGCTAACTCCAACTCACATCACAAAAATGAAGTAATTCTGTGTATAAAGGAGAAAAATATCATGACTTCATTGACCCTACCTTTTATAAAATTCTGTTTTTACTTTCCATTTTTATGTAAATTTTCATCTGGAGCATTTACCAAACTTGGAAAAAGGATTGAATGGCTGGGATATAATCGGAGACGACCAAGAATCCTTCTACGTTTATGGTCAAATAAGGAAACATGGAACTATACATTAAACTACGAGAAATTATTTCAACACTCTTTTCAACACGCCCTATACCCTTATTCTGATTCTTGCTTAAATAAGGACTATCACAAAGAAAATAGGCACTTAAGATACTTAAAGACCATGGTTTATTGGTTGCAAGGCCTGTGGAGTTTCCGATGGAAGAAATTAAACTTTTTTATAAAGAGGTGCTACTTAAGGATCCCGCCAAATACTGACATTCCGTACATGTACTTAGTCGGCAGCAGCCCCAGATGGATGCCGCTCTTCGAGTTGTTTGATATCTTAAATCTACTCCTACCAAGGTTTGTTCTTTCCATCAGACAACAAATTAAATCTAATTTGTGTGTTCTTGGGCAATTCATTGATTTCATAGTGAATGAAAAGATAGATAACAGTTTTTTTTGTCTTCAACCGAAGTCGAGTATAGAGTTGGAAGGTTTACAATTGCCGCATTATGGAGCATCTATTTTATATTGTGATAATCAGGCAACCTTACATATACGGGTGAATCCAGTTTTTCACAAGAGAACTCGGCACGTTGAGATGTATTATCATTTCATCATGGACAAGATAGTTGATGCTGATGTTTTTACGAAACCATTAGGCAAGAAAATGTTCTCGGTGATAGTACGCAAGTTGGGAGTTCTTGACATTTGCTCTCCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

582

Amino Acids

70.07

Weight (kDa)

9.94

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 6 cut(s) 71, 393, 785, 828, 929, 1256
Acc36I ACCTGC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 1339
AccI GTMKAC 1 cut(s) 148
AciI CCGC 4 cut(s) 530, 1280, 1337, 1526
AclWI GGATC 2 cut(s) 1270, 1283
AcsI RAATTY 5 cut(s) 443, 797, 822, 932, 962
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 4 cut(s) 66, 1301, 1307, 1707
AfiI CCNNNNNNNGG 1 cut(s) 1532
AflII CTTAAG 2 cut(s) 1180, 1270
AflIII ACRYGT 2 cut(s) 143, 1302
AgsI TTSAA 9 cut(s) 127, 165, 409, 434, 607, 1004, 1103, 1115, 1487
AluBI AGCT 2 cut(s) 28, 603
AluI AGCT 2 cut(s) 28, 603
Alw26I GTCTC 1 cut(s) 1018
AlwI GGATC 2 cut(s) 1270, 1283
AoxI GGCC 1 cut(s) 1216
ApeKI GCWGC 2 cut(s) 1317, 1320
ApoI RAATTY 5 cut(s) 443, 797, 822, 932, 962
AseI ATTAAT 3 cut(s) 228, 551, 621
Asp700I GAANNNNTTC 2 cut(s) 876, 1691
AsuHPI GGTGA 2 cut(s) 1594, 1711
BamHI GGATCC 1 cut(s) 1275
BanI GGYRCC 1 cut(s) 526
BbsI GAAGAC 2 cut(s) 559, 1475
BbvI GCAGC 2 cut(s) 1329, 1332
BccI CCATC 4 cut(s) 468, 1227, 1323, 1400
BcoDI GTCTC 1 cut(s) 1018
BfaI CTAG 3 cut(s) 440, 696, 708
BfrI CTTAAG 2 cut(s) 1180, 1270
BfuAI ACCTGC 1 cut(s) 315
BglII AGATCT 1 cut(s) 710
BisI GCNGC 4 cut(s) 1318, 1321, 1337, 1526
BlsI GCNGC 4 cut(s) 1319, 1322, 1338, 1527
BmiI GGNNCC 2 cut(s) 528, 1277
BmsI GCATC 5 cut(s) 316, 570, 1323, 1547, 1645
BpiI GAAGAC 2 cut(s) 559, 1475
BpmI CTGGAG 1 cut(s) 993
BpuEI CTTGAG 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 1197, 1376
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 1532
Bse1I ACTGG 1 cut(s) 1589
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 1197, 1376
BseGI GGATG 2 cut(s) 307, 1338
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 1532
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 1589
BseXI GCAGC 2 cut(s) 1329, 1332
BseYI CCCAGC 1 cut(s) 1009
BsgI GTGCAG 1 cut(s) 860
BshFI GGCC 1 cut(s) 1218
BshNI GGYRCC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 1532
BsmAI GTCTC 1 cut(s) 1018
BsmBI CGTCTC 1 cut(s) 1018
BsnI GGCC 1 cut(s) 1218
Bsp143I GATC 2 cut(s) 710, 1275
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 4 cut(s) 530, 1280, 1337, 1526
BspANI GGCC 1 cut(s) 1218
BspCNI CTCAG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 2 cut(s) 528, 1277
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 2 cut(s) 1270, 1283
BspQI GCTCTTC 1 cut(s) 1346
BspT107I GGYRCC 1 cut(s) 526
BspTI CTTAAG 2 cut(s) 1180, 1270
BsrBI CCGCTC 1 cut(s) 1339
BsrI ACTGG 1 cut(s) 1589
BssECI CCNNGG 2 cut(s) 1197, 1376
BssMI GATC 2 cut(s) 710, 1275
BssT1I CCWWGG 2 cut(s) 1197, 1376
Bst4CI ACNGT 3 cut(s) 177, 237, 1472
Bst6I CTCTTC 1 cut(s) 1346
BstAFI CTTAAG 2 cut(s) 1180, 1270
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 2 cut(s) 24, 1309
BstDSI CCRYGG 1 cut(s) 1197
BstF5I GGATG 2 cut(s) 307, 1338
BstKTI GATC 2 cut(s) 713, 1278
BstMAI GTCTC 1 cut(s) 1018
BstMBI GATC 2 cut(s) 710, 1275
BstNSI RCATGY 2 cut(s) 147, 1306
BstV1I GCAGC 2 cut(s) 1329, 1332
BstV2I GAAGAC 2 cut(s) 559, 1475
BstX2I RGATCY 2 cut(s) 710, 1275
BstYI RGATCY 2 cut(s) 710, 1275
BsuRI GGCC 1 cut(s) 1218
BtgI CCRYGG 1 cut(s) 1197
BtsCI GGATG 2 cut(s) 307, 1338
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 843
CciI TCATGA 1 cut(s) 903
Csp6I GTAC 4 cut(s) 65, 1300, 1306, 1706
CspCI CAANNNNNGTGG 2 cut(s) 1202, 1237
CviAII CATG 6 cut(s) 144, 904, 1068, 1198, 1303, 1639
CviJI RGCY 7 cut(s) 9, 28, 603, 845, 1009, 1218, 1323
CviKI_1 RGCY 7 cut(s) 9, 28, 603, 845, 1009, 1218, 1323
CviQI GTAC 4 cut(s) 65, 1300, 1306, 1706
DdeI CTNAG 2 cut(s) 24, 1309
DpnI GATC 2 cut(s) 712, 1277
DpnII GATC 2 cut(s) 710, 1275
DraI TTTAAA 2 cut(s) 513, 814
Eam1104I CTCTTC 1 cut(s) 1346
EarI CTCTTC 1 cut(s) 1346
Eco130I CCWWGG 2 cut(s) 1197, 1376
Eco147I AGGCCT 1 cut(s) 1218
Eco32I GATATC 1 cut(s) 1357
Eco57I CTGAAG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 2 cut(s) 1197, 1376
ErhI CCWWGG 2 cut(s) 1197, 1376
Esp3I CGTCTC 1 cut(s) 1018
FaeI CATG 6 cut(s) 147, 907, 1071, 1201, 1306, 1642
FatI CATG 6 cut(s) 143, 903, 1067, 1197, 1302, 1638
FauI CCCGC 1 cut(s) 1287
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 1318, 1321, 1337, 1526
FokI GGATG 2 cut(s) 314, 1345
Fsp4HI GCNGC 4 cut(s) 1318, 1321, 1337, 1526
FspBI CTAG 3 cut(s) 440, 696, 708
GluI GCNGC 4 cut(s) 1318, 1321, 1337, 1526
GsaI CCCAGC 1 cut(s) 1013
GsuI CTGGAG 1 cut(s) 993
HaeIII GGCC 1 cut(s) 1218
HapII CCGG 1 cut(s) 299
Hin1II CATG 6 cut(s) 147, 907, 1071, 1201, 1306, 1642
HinfI GANTC 3 cut(s) 1035, 1139, 1585
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 1594, 1711
Hpy166II GTNNAC 4 cut(s) 149, 173, 538, 1517
Hpy188I TCNGA 4 cut(s) 1023, 1138, 1232, 1397
Hpy188III TCNNGA 4 cut(s) 696, 904, 972, 1724
Hpy8I GTNNAC 4 cut(s) 149, 173, 538, 1517
HpyAV CCTTC 2 cut(s) 1049, 1505
HpyCH4III ACNGT 3 cut(s) 177, 237, 1472
HpyCH4IV ACGT 3 cut(s) 788, 1045, 1614
HpyCH4V TGCA 6 cut(s) 4, 216, 324, 561, 841, 1213
HpyF3I CTNAG 2 cut(s) 24, 1309
HpySE526I ACGT 3 cut(s) 788, 1045, 1614
Hsp92II CATG 6 cut(s) 147, 907, 1071, 1201, 1306, 1642
Kzo9I GATC 2 cut(s) 710, 1275
LguI GCTCTTC 1 cut(s) 1346
LmnI GCTCC 2 cut(s) 974, 1535
Lsp1109I GCAGC 2 cut(s) 1329, 1332
LweI GCATC 5 cut(s) 316, 570, 1323, 1547, 1645
MaeI CTAG 3 cut(s) 440, 696, 708
MaeII ACGT 3 cut(s) 788, 1045, 1614
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 712, 1277
MbiI CCGCTC 1 cut(s) 1339
MboI GATC 2 cut(s) 710, 1275
MboII GAAGA 5 cut(s) 43, 559, 1249, 1333, 1475
MfeI CAATTG 1 cut(s) 1520
MflI RGATCY 2 cut(s) 710, 1275
MmeI TCCRAC 2 cut(s) 876, 1488
MnlI CCTC 1 cut(s) 1254
MroXI GAANNNNTTC 2 cut(s) 876, 1691
MslI CAYNNNNRTG 2 cut(s) 867, 955
MspCI CTTAAG 2 cut(s) 1180, 1270
MspI CCGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 1520
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 2 cut(s) 710, 1275
NlaIII CATG 6 cut(s) 147, 907, 1071, 1201, 1306, 1642
NlaIV GGNNCC 2 cut(s) 528, 1277
NmeAIII GCCGAG 1 cut(s) 1588
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 2 cut(s) 147, 1306
PagI TCATGA 1 cut(s) 903
PceI AGGCCT 1 cut(s) 1218
PciI ACATGT 2 cut(s) 143, 1302
PciSI GCTCTTC 1 cut(s) 1346
PdmI GAANNNNTTC 2 cut(s) 876, 1691
PfeI GAWTC 3 cut(s) 1035, 1139, 1585
PkrI GCNGC 4 cut(s) 1319, 1322, 1338, 1527
PscI ACATGT 2 cut(s) 143, 1302
PshBI ATTAAT 3 cut(s) 228, 551, 621
PsiI TTATAA 6 cut(s) 71, 393, 785, 828, 929, 1256
PspFI CCCAGC 1 cut(s) 1009
PspN4I GGNNCC 2 cut(s) 528, 1277
PsuI RGATCY 2 cut(s) 710, 1275
RsaI GTAC 4 cut(s) 66, 1301, 1307, 1707
RsaNI GTAC 4 cut(s) 65, 1300, 1306, 1706
RseI CAYNNNNRTG 2 cut(s) 867, 955
SapI GCTCTTC 1 cut(s) 1346
SatI GCNGC 4 cut(s) 1318, 1321, 1337, 1526
Sau3AI GATC 2 cut(s) 710, 1275
SfaNI GCATC 5 cut(s) 316, 570, 1323, 1547, 1645
SmiMI CAYNNNNRTG 2 cut(s) 867, 955
SmlI CTYRAG 3 cut(s) 311, 1180, 1270
SmoI CTYRAG 3 cut(s) 311, 1180, 1270
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 4 cut(s) 530, 1280, 1337, 1526
SspI AATATT 1 cut(s) 774
SspMI CTAG 3 cut(s) 440, 696, 708
StuI AGGCCT 1 cut(s) 1218
StyI CCWWGG 2 cut(s) 1197, 1376
TaaI ACNGT 3 cut(s) 177, 237, 1472
TaiI ACGT 3 cut(s) 791, 1048, 1617
TaqI TCGA 2 cut(s) 1344, 1496
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 2 cut(s) 1339, 1528
TfiI GAWTC 3 cut(s) 1035, 1139, 1585
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 1317, 1320
Tsp45I GTSAC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 1287
Vha464I CTTAAG 2 cut(s) 1180, 1270
VspI ATTAAT 3 cut(s) 228, 551, 621
XapI RAATTY 5 cut(s) 443, 797, 822, 932, 962
XbaI TCTAGA 1 cut(s) 695
XceI RCATGY 2 cut(s) 147, 1306
XmiI GTMKAC 1 cut(s) 148
XmnI GAANNNNTTC 2 cut(s) 876, 1691
XspI CTAG 3 cut(s) 440, 696, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.