Rw3G024450

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000889
Physical Location & Seq
Forward (+)
31481723 .. 31482776
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024450.1

Sequence Viewer

Length: 753 bp
ATGGGTGATGAATTCAATGCCCTTCAGCAAGCTGGTACATGGACTCTTGTTCCACCCTCCTCTTCCATGAATATCTTACCCAATAAATGGGTTTTTCAGATCAAGCGGCGTTCTGATGGTTCGATAGAGCAGTATAAAACACTCTTAGTGGCAAATGGTTTCCATCAATGTGAAGGTGTTGATTATGGTGAGACTTTTAGTCTCGTTGTTAAGCATTCCACCATGCGCCTTATTCTTGCCATTGTTGTCAATTTCAGGTGGTCTGTTAAACAGTTAGATGTTCAAAACGCCTTTCTACATGGATTTCTCACTGAGGATGATCTGGGCAATCTTCATTATTTTTTGGGTATTGAAGTTCAACATTCTGCTGTTGGTCTCTCTCTTACTCAATCTAAATATGCTCTTGATCTCTTACTCCGCACATATATGATTGATGCCAAACCCTTTGCCACTCCAGCTGTTAGTGGGAAACGTTTGAGTATTCATGATGGTGATGCCTTATCTGATCCTACTATTTTTCGAAGTGTTGTCGGAGCCCTTCAATACCTTACAATCACACGTCCAGATATTGCCTTTGTTGTTAATCAAGTATGTCAATATTTACATAAACCTACTACCACACATTGGGTTGTAGTGAAGTGTATTCTCAGGTACATCAAGAAAACTCACAATCATGGTCTCCTTTATAGGCCTGGTTCTTTCAATATAAATGCTCTCTCTGATAAGGACTCTGCTGGCGATCCGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

250

Amino Acids

28.04

Weight (kDa)

7.15

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 13 - 105 2.2e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 87, 624
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 2 cut(s) 106, 418
AclI AACGTT 1 cut(s) 472
AclWI GGATC 2 cut(s) 500, 734
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 2 cut(s) 37, 653
AfiI CCNNNNNNNGG 2 cut(s) 87, 624
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 6 cut(s) 16, 284, 353, 359, 542, 703
AhdI GACNNNNNGTC 1 cut(s) 198
AjiI CACGTC 1 cut(s) 560
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 2 cut(s) 32, 458
AluI AGCT 2 cut(s) 32, 458
Alw26I GTCTC 4 cut(s) 185, 206, 380, 683
AlwI GGATC 2 cut(s) 500, 734
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 1 cut(s) 689
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 17, 200, 503
AsuII TTCGAA 1 cut(s) 520
BanII GRGCYC 1 cut(s) 538
BccI CCATC 3 cut(s) 110, 171, 482
BciT130I CCWGG 1 cut(s) 693
BcoDI GTCTC 4 cut(s) 185, 206, 380, 683
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 693
BmeRI GACNNNNNGTC 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 424, 484
BpmI CTGGAG 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 520
BsaI GGTCTC 2 cut(s) 380, 683
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 624
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 693
BseGI GGATG 2 cut(s) 322, 751
BseLI CCNNNNNNNGG 2 cut(s) 87, 624
BseMII CTCAG 2 cut(s) 303, 661
BseRI GAGGAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 691
BsiSI CCGG 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 87, 624
BsmAI GTCTC 4 cut(s) 185, 206, 380, 683
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 691
Bso31I GGTCTC 2 cut(s) 380, 683
Bsp119I TTCGAA 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 538
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 5 cut(s) 99, 319, 406, 505, 739
BspACI CCGC 2 cut(s) 106, 418
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 2 cut(s) 304, 660
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 535
BspPI GGATC 2 cut(s) 500, 734
BspT104I TTCGAA 1 cut(s) 520
BspTNI GGTCTC 2 cut(s) 380, 683
BssMI GATC 5 cut(s) 99, 319, 406, 505, 739
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 30, 736
BstDEI CTNAG 3 cut(s) 145, 312, 647
BstF5I GGATG 2 cut(s) 322, 751
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 102, 322, 409, 508, 742
BstMAI GTCTC 4 cut(s) 185, 206, 380, 683
BstMBI GATC 5 cut(s) 99, 319, 406, 505, 739
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 691
BsuRI GGCC 1 cut(s) 691
BtrI CACGTC 1 cut(s) 560
BtsCI GGATG 2 cut(s) 322, 751
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 30, 736
CciI TCATGA 1 cut(s) 484
CfoI GCGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 36, 652
CviAII CATG 6 cut(s) 39, 67, 223, 299, 485, 674
CviJI RGCY 4 cut(s) 32, 458, 536, 691
CviKI_1 RGCY 4 cut(s) 32, 458, 536, 691
CviQI GTAC 2 cut(s) 36, 652
DdeI CTNAG 3 cut(s) 145, 312, 647
DpnI GATC 5 cut(s) 101, 321, 408, 507, 741
DpnII GATC 5 cut(s) 99, 319, 406, 505, 739
DriI GACNNNNNGTC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 380, 683
Eco57I CTGAAG 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 538
FaeI CATG 6 cut(s) 42, 70, 226, 302, 488, 677
FatI CATG 6 cut(s) 38, 66, 222, 298, 484, 673
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 1 cut(s) 691
HapII CCGG 1 cut(s) 743
HhaI GCGC 1 cut(s) 228
Hin1II CATG 6 cut(s) 42, 70, 226, 302, 488, 677
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 43, 728
HpaII CCGG 1 cut(s) 743
HphI GGTGA 3 cut(s) 17, 200, 503
Hpy188I TCNGA 5 cut(s) 99, 115, 505, 533, 721
Hpy188III TCNNGA 5 cut(s) 404, 485, 563, 658, 743
HpyAV CCTTC 3 cut(s) 32, 167, 548
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 2 cut(s) 472, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 145, 312, 647
HpySE526I ACGT 2 cut(s) 472, 559
Hsp92II CATG 6 cut(s) 42, 70, 226, 302, 488, 677
HspAI GCGC 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 742
Kzo9I GATC 5 cut(s) 99, 319, 406, 505, 739
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 9 cut(s) 18, 241, 308, 468, 576, 634, 678, 705, 720
LweI GCATC 2 cut(s) 424, 484
MaeII ACGT 2 cut(s) 472, 559
MalI GATC 5 cut(s) 101, 321, 408, 507, 741
MboI GATC 5 cut(s) 99, 319, 406, 505, 739
MboII GAAGA 2 cut(s) 54, 323
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 2 cut(s) 11, 250
MlyI GAGTC 2 cut(s) 37, 722
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 3 cut(s) 67, 70, 307
MroI TCCGGA 1 cut(s) 742
MseI TTAA 3 cut(s) 210, 267, 582
MslI CAYNNNNRTG 4 cut(s) 168, 425, 489, 672
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 1 cut(s) 693
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 5 cut(s) 99, 319, 406, 505, 739
NlaIII CATG 6 cut(s) 42, 70, 226, 302, 488, 677
NlaIV GGNNCC 1 cut(s) 535
NspV TTCGAA 1 cut(s) 520
PagI TCATGA 1 cut(s) 484
PceI AGGCCT 1 cut(s) 691
PctI GAATGC 1 cut(s) 214
PflMI CCANNNNNTGG 2 cut(s) 87, 624
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 2 cut(s) 37, 722
PpsI GAGTC 2 cut(s) 37, 722
Psp1406I AACGTT 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PspN4I GGNNCC 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 37, 653
RsaNI GTAC 2 cut(s) 36, 652
RseI CAYNNNNRTG 4 cut(s) 168, 425, 489, 672
SaqAI TTAA 3 cut(s) 210, 267, 582
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 5 cut(s) 99, 319, 406, 505, 739
SchI GAGTC 2 cut(s) 37, 722
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 34, 178, 260, 460, 475, 549, 562, 613, 653
SfaNI GCATC 2 cut(s) 424, 484
SfuI TTCGAA 1 cut(s) 520
SmiMI CAYNNNNRTG 4 cut(s) 168, 425, 489, 672
Sse9I AATT 2 cut(s) 11, 250
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 2 cut(s) 106, 418
SspI AATATT 1 cut(s) 599
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 2 cut(s) 475, 562
TaqI TCGA 2 cut(s) 122, 520
TasI AATT 2 cut(s) 11, 250
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 3 cut(s) 210, 267, 582
Tru9I TTAA 3 cut(s) 210, 267, 582
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 4 cut(s) 24, 83, 323, 473
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 2 cut(s) 87, 624
XapI RAATTY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.