Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000889

Physical Location & Seq

Genomic Coordinates Forward (+)

18914045 .. 18915001

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGAATAATGTTAACGACTTGGCCGTCATGAGCATGGTCTTTGGGGCTCAGCTGCTCGGCACCGCCGTCTTTCTGGTTAGCACAGATAGCGGGAGAGGGGACTTGAAGTTGATGTTCCCAACAGTTGGAGTCTTTTTTATCACCATATACACAATCTGGGCAATGACGAGAGGTCTCGGTTTCAACCACTATGGTTTCAACCACAAGGCACGCACCCTTGTGGTGCTAGGAATTATCAGAGCCGAGATCCTCTCGAACTTGGTTTACTCTTTCCGCTGCGAATTCAAGAGTATAGAGGAATGGCTAGAGGACTGTGAGATATTGTGGTTGGGACATTTGCTAAGAGATTTGGGGTTTAAACAGAGGAAGGCTATGCCTCTGTATTGTGATAATAAAGCTGCAATTGAAATTGCACACAATCTTGTTCAACATGATCGTACTAAGCATGTGGAGGTAGATCAACACTTCATTAAGGAGAAATTAGATGGACAAGTCATTTATTTCCCGTTTGTCCTTATAGAGGAGCAGTTAGTTGATATTCTTACAAAGGCTCTCTCAGCTAAGGCATTTCGTGACTCACTTGACAAGTTGGGCATTTGCGATTTGTATACGTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

208

Amino Acids

23.64

Weight (kDa)

6.15

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00820
fragaria_vesca	FvH4_2g11011 FvH4_2g23061 FvH4_3g33302 FvH4_4g01631 FvH4_5g39270 FvH4_6g33903
malus_domestica	MD00G1024600.v1.1 MD00G1084700.v1.1 MD02G1303700.v1.1 MD03G1056000.v1.1 MD04G1231400.v1.1 MD05G1050400.v1.1 MD09G1100700.v1.1 MD09G1214100.v1.1 MD11G1146000.v1.1 MD11G1197500.v1.1 MD12G1020900.v1.1 MD12G1052500.v1.1 MD12G1175300.v1.1 MD12G1185900.v1.1 MD13G1050200.v1.1 MD13G1157100.v1.1 MD14G1109000.v1.1 MD14G1189500.v1.1 MD14G1225200.v1.1 MD16G1247000.v1.1 MD16G1278000.v1.1 MD17G1115400.v1.1 MD17G1248200.v1.1
pyrus_communis	pycom02g18580 pycom03g02970 pycom03g07840 pycom05g12390 pycom05g14310 pycom07g14010 pycom07g17390 pycom08g03700 pycom08g03730 pycom12g14660 pycom14g19040 pycom15g04630 pycom15g35310 pycom17g24840 pycom520g01050
rosa_chinensis	RchiOBHm_Chr2g0093581 RchiOBHm_Chr2g0139021 RchiOBHm_Chr2g0153961 RchiOBHm_Chr3g0454851 RchiOBHm_Chr3g0479941 RchiOBHm_Chr5g0074721 RchiOBHm_Chr7g0182831 RchiOBHm_Chr7g0210861 RchiOBHm_Chr7g0238261
rosa_roxburghii	Rroxscaffold_1G00010990 Rroxscaffold_1G00042070 Rroxscaffold_2G00082160 Rroxscaffold_3G00266700
rosa_wichuraiana	Rw1G002370 Rw2G026000 Rw3G024450 Rw4G009390 Rw5G000900 Rw5G015970 Rw6G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	611
AciI	CCGC	3 cut(s)	66, 93, 277
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	128, 523
AgsI	TTSAA	6 cut(s)	109, 187, 202, 289, 410, 431
AhdI	GACNNNNNGTC	1 cut(s)	174
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	55, 401, 563
AluI	AGCT	3 cut(s)	55, 401, 563
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	55, 279, 401
ApoI	RAATTY	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	42, 266, 388
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	2 cut(s)	11, 53
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	230, 308
BisI	GCNGC	3 cut(s)	56, 280, 402
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	3 cut(s)	57, 281, 403
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 523
Bse3DI	GCAATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	128, 523
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	65, 573
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	3 cut(s)	42, 266, 388
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	116, 348
BslI	CCNNNNNNNGG	2 cut(s)	128, 523
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	116, 348
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	249, 436, 460
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	66, 93, 277
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	64, 572
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	171
BssMI	GATC	3 cut(s)	249, 436, 460
BssNAI	GTATAC	1 cut(s)	612
Bst1107I	GTATAC	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	127, 317
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	5 cut(s)	51, 344, 444, 559, 564
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstKTI	GATC	3 cut(s)	252, 439, 463
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	249, 436, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 560
BstNSI	RCATGY	1 cut(s)	452
BstV1I	GCAGC	3 cut(s)	42, 266, 388
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	4 cut(s)	31, 37, 434, 449
CviJI	RGCY	9 cut(s)	26, 50, 55, 245, 307, 374, 401, 554, 563
CviKI_1	RGCY	9 cut(s)	26, 50, 55, 245, 307, 374, 401, 554, 563
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	5 cut(s)	51, 344, 444, 559, 564
DpnI	GATC	3 cut(s)	251, 438, 462
DpnII	GATC	3 cut(s)	249, 436, 460
DraI	TTTAAA	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	4 cut(s)	34, 40, 437, 452
FaqI	GGGAC	2 cut(s)	116, 348
FatI	CATG	4 cut(s)	30, 36, 433, 448
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	3 cut(s)	56, 280, 402
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	3 cut(s)	56, 280, 402
FspBI	CTAG	2 cut(s)	230, 308
GluI	GCNGC	3 cut(s)	56, 280, 402
HaeIII	GGCC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	34, 40, 437, 452
HincII	GTYRAC	2 cut(s)	16, 618
HindII	GTYRAC	2 cut(s)	16, 618
HinfI	GANTC	2 cut(s)	132, 578
HpaI	GTTAAC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	4 cut(s)	16, 268, 612, 618
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	4 cut(s)	31, 256, 289, 575
Hpy8I	GTNNAC	4 cut(s)	16, 268, 612, 618
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	127, 317
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	2 cut(s)	404, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 560
HpyF3I	CTNAG	5 cut(s)	51, 344, 444, 559, 564
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	4 cut(s)	34, 40, 437, 452
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	249, 436, 460
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	2 cut(s)	62, 145
Lsp1109I	GCAGC	3 cut(s)	42, 266, 388
MaeI	CTAG	2 cut(s)	230, 308
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	3 cut(s)	251, 438, 462
MboI	GATC	3 cut(s)	249, 436, 460
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	5 cut(s)	234, 284, 405, 411, 482
MlyI	GAGTC	2 cut(s)	141, 572
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	9 cut(s)	92, 167, 263, 292, 304, 360, 390, 448, 517
MseI	TTAA	3 cut(s)	15, 360, 474
MslI	CAYNNNNRTG	2 cut(s)	35, 221
MspA1I	CMGCKG	2 cut(s)	55, 279
MssI	GTTTAAAC	1 cut(s)	361
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	90, 560
NdeII	GATC	3 cut(s)	249, 436, 460
NlaIII	CATG	4 cut(s)	34, 40, 437, 452
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	2 cut(s)	39, 271
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 66
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	57, 281, 403
PleI	GAGTC	2 cut(s)	140, 572
PmeI	GTTTAAAC	1 cut(s)	361
PpsI	GAGTC	2 cut(s)	140, 572
PspN4I	GGNNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	251, 283
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	2 cut(s)	35, 221
SaqAI	TTAA	3 cut(s)	15, 360, 474
SatI	GCNGC	3 cut(s)	56, 280, 402
Sau3AI	GATC	3 cut(s)	249, 436, 460
SchI	GAGTC	2 cut(s)	141, 572
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	6 cut(s)	57, 178, 403, 459, 565, 617
SmiMI	CAYNNNNRTG	2 cut(s)	35, 221
Sse9I	AATT	5 cut(s)	234, 284, 405, 411, 482
SsiI	CCGC	3 cut(s)	66, 93, 277
SspMI	CTAG	2 cut(s)	230, 308
TaaI	ACNGT	2 cut(s)	127, 317
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	1 cut(s)	257
TasI	AATT	5 cut(s)	234, 284, 405, 411, 482
Tru1I	TTAA	3 cut(s)	15, 360, 474
Tru9I	TTAA	3 cut(s)	15, 360, 474
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	3 cut(s)	55, 279, 401
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	20, 460
Van91I	CCANNNNNTGG	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	2 cut(s)	230, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.