Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 80 - 221 | 2.7e-15 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 355 - 432 | 2e-06 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 482 - 533 | 7.9e-10 | GAG-pre-integrase domain |
| rve | PF00665 | 548 - 646 | 1.9e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 720 - 780 | 4.5e-23 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 932 - 1172 | 2.4e-67 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1678, 3305 |
| Acc16I | TGCGCA | 1 cut(s) | 123 |
| AccB1I | GGYRCC | 4 cut(s) | 638, 2792, 3263, 3590 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1550, 2844, 3177 |
| AccBSI | CCGCTC | 1 cut(s) | 2777 |
| AccI | GTMKAC | 1 cut(s) | 1825 |
| AccII | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| AclI | AACGTT | 3 cut(s) | 370, 2951, 3142 |
| AcoI | YGGCCR | 5 cut(s) | 315, 706, 778, 3486, 3523 |
| AcsI | RAATTY | 3 cut(s) | 1637, 2138, 2285 |
| AcuI | CTGAAG | 4 cut(s) | 980, 3090, 3581, 3921 |
| AcyI | GRCGYC | 1 cut(s) | 2749 |
| AdeI | CACNNNGTG | 1 cut(s) | 1150 |
| AfaI | GTAC | 5 cut(s) | 100, 1133, 2832, 3421, 3678 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 842, 1550, 2279, 2844, 3031, 3177 |
| AflIII | ACRYGT | 1 cut(s) | 1922 |
| AjnI | CCWGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 143, 175, 277, 309 |
| Alw21I | GWGCWC | 4 cut(s) | 829, 835, 2594, 3866 |
| Alw26I | GTCTC | 6 cut(s) | 73, 163, 510, 580, 1468, 2301 |
| Ama87I | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| ApeKI | GCWGC | 8 cut(s) | 259, 683, 761, 764, 1007, 1013, 3686, 3932 |
| ApoI | RAATTY | 3 cut(s) | 1637, 2138, 2285 |
| AseI | ATTAAT | 2 cut(s) | 2064, 2987 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1394, 3047 |
| AspLEI | GCGC | 3 cut(s) | 124, 720, 1737 |
| AspS9I | GGNCC | 6 cut(s) | 554, 670, 860, 1348, 3383, 3463 |
| AsuII | TTCGAA | 1 cut(s) | 246 |
| AvaI | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| AvaII | GGWCC | 4 cut(s) | 554, 670, 1348, 3463 |
| BaeGI | GKGCMC | 2 cut(s) | 2601, 3595 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3565, 3598 |
| BalI | TGGCCA | 1 cut(s) | 317 |
| BanI | GGYRCC | 4 cut(s) | 638, 2792, 3263, 3590 |
| BanII | GRGCYC | 2 cut(s) | 829, 3866 |
| BauI | CACGAG | 2 cut(s) | 828, 2587 |
| Bbv12I | GWGCWC | 4 cut(s) | 829, 835, 2594, 3866 |
| BbvCI | CCTCAGC | 2 cut(s) | 864, 2763 |
| BbvI | GCAGC | 8 cut(s) | 271, 670, 748, 751, 994, 1000, 3673, 3919 |
| BceAI | ACGGC | 5 cut(s) | 229, 693, 765, 1408, 3510 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 136, 170, 2578, 2612, 3317, 3351 |
| BciT130I | CCWGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| BclI | TGATCA | 2 cut(s) | 2382, 3727 |
| BcoDI | GTCTC | 6 cut(s) | 73, 163, 510, 580, 1468, 2301 |
| BfaI | CTAG | 5 cut(s) | 1485, 1530, 1589, 3203, 3401 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3173 |
| BglII | AGATCT | 1 cut(s) | 3376 |
| BlpI | GCTNAGC | 1 cut(s) | 3348 |
| Bme1390I | CCNGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| Bme18I | GGWCC | 4 cut(s) | 554, 670, 1348, 3463 |
| BmeT110I | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| BmgT120I | GGNCC | 6 cut(s) | 554, 670, 860, 1348, 3383, 3463 |
| BmiI | GGNNCC | 9 cut(s) | 152, 640, 1044, 2794, 2878, 3061, 3265, 3464, 3592 |
| BmrFI | CCNGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| BmrI | ACTGGG | 1 cut(s) | 3691 |
| BmuI | ACTGGG | 1 cut(s) | 3691 |
| BpmI | CTGGAG | 2 cut(s) | 1098, 2698 |
| Bpu10I | CCTNAGC | 2 cut(s) | 864, 2763 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3348 |
| Bpu14I | TTCGAA | 1 cut(s) | 246 |
| BpuEI | CTTGAG | 4 cut(s) | 570, 1035, 1173, 3877 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3972 |
| BsaHI | GRCGYC | 1 cut(s) | 2749 |
| BsaI | GGTCTC | 1 cut(s) | 510 |
| BsaWI | WCCGGW | 2 cut(s) | 2208, 2353 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 143, 173, 1295, 1325, 2482, 2512 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 842, 1550, 2279, 2844, 3031, 3177 |
| Bse118I | RCCGGY | 2 cut(s) | 731, 3791 |
| Bse1I | ACTGG | 6 cut(s) | 394, 1410, 1990, 2715, 3316, 3686 |
| Bse3DI | GCAATG | 4 cut(s) | 447, 699, 3342, 3624 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3972 |
| BseBI | CCWGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| BseJI | GATNNNNATC | 1 cut(s) | 3972 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 842, 1550, 2279, 2844, 3031, 3177 |
| BseMI | GCAATG | 4 cut(s) | 447, 699, 3342, 3624 |
| BseMII | CTCAG | 6 cut(s) | 421, 878, 2754, 3125, 3362, 3897 |
| BseNI | ACTGG | 6 cut(s) | 394, 1410, 1990, 2715, 3316, 3686 |
| BseRI | GAGGAG | 5 cut(s) | 13, 1035, 1038, 2115, 2780 |
| BseSI | GKGCMC | 2 cut(s) | 2601, 3595 |
| BseX3I | CGGCCG | 1 cut(s) | 778 |
| BseXI | GCAGC | 8 cut(s) | 271, 670, 748, 751, 994, 1000, 3673, 3919 |
| BseYI | CCCAGC | 1 cut(s) | 2251 |
| Bsh1236I | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| Bsh1285I | CGRYCG | 1 cut(s) | 781 |
| BshNI | GGYRCC | 4 cut(s) | 638, 2792, 3263, 3590 |
| BsiEI | CGRYCG | 1 cut(s) | 781 |
| BsiHKAI | GWGCWC | 4 cut(s) | 829, 835, 2594, 3866 |
| BsiHKCI | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| BsiSI | CCGG | 5 cut(s) | 732, 1381, 2209, 2354, 3792 |
| BslFI | GGGAC | 5 cut(s) | 1239, 3222, 3427, 3476, 3603 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 842, 1550, 2279, 2844, 3031, 3177 |
| BsmAI | GTCTC | 6 cut(s) | 73, 163, 510, 580, 1468, 2301 |
| BsmBI | CGTCTC | 3 cut(s) | 163, 580, 1468 |
| BsmFI | GGGAC | 5 cut(s) | 1239, 3222, 3427, 3476, 3603 |
| BsmI | GAATGC | 2 cut(s) | 1905, 2652 |
| Bso31I | GGTCTC | 1 cut(s) | 510 |
| BsoBI | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| Bsp119I | TTCGAA | 1 cut(s) | 246 |
| Bsp1286I | GDGCHC | 6 cut(s) | 829, 835, 2594, 2601, 3595, 3866 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3348 |
| Bsp19I | CCATGG | 2 cut(s) | 270, 2757 |
| Bsp68I | TCGCGA | 1 cut(s) | 594 |
| BspCNI | CTCAG | 6 cut(s) | 420, 877, 2755, 3124, 3361, 3898 |
| BspFNI | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| BspHI | TCATGA | 2 cut(s) | 3724, 3964 |
| BspLI | GGNNCC | 9 cut(s) | 152, 640, 1044, 2794, 2878, 3061, 3265, 3464, 3592 |
| BspT104I | TTCGAA | 1 cut(s) | 246 |
| BspT107I | GGYRCC | 4 cut(s) | 638, 2792, 3263, 3590 |
| BspTNI | GGTCTC | 1 cut(s) | 510 |
| BsrBI | CCGCTC | 1 cut(s) | 2777 |
| BsrDI | GCAATG | 4 cut(s) | 447, 699, 3342, 3624 |
| BsrFI | RCCGGY | 2 cut(s) | 731, 3791 |
| BsrI | ACTGG | 6 cut(s) | 394, 1410, 1990, 2715, 3316, 3686 |
| BssAI | RCCGGY | 2 cut(s) | 731, 3791 |
| BssNI | GRCGYC | 1 cut(s) | 2749 |
| BssSI | CACGAG | 2 cut(s) | 828, 2587 |
| BssT1I | CCWWGG | 3 cut(s) | 270, 850, 2757 |
| Bst2BI | CACGAG | 2 cut(s) | 828, 2587 |
| Bst2UI | CCWGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| Bst6I | CTCTTC | 3 cut(s) | 13, 40, 2616 |
| BstACI | GRCGYC | 1 cut(s) | 2749 |
| BstBI | TTCGAA | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 9 cut(s) | 120, 592, 706, 2072, 2164, 2928, 2932, 3497, 3737 |
| BstDEI | CTNAG | 6 cut(s) | 407, 864, 2763, 3111, 3348, 3906 |
| BstDSI | CCRYGG | 7 cut(s) | 270, 709, 781, 1038, 2277, 2741, 2757 |
| BstFNI | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| BstHHI | GCGC | 3 cut(s) | 124, 720, 1737 |
| BstMAI | GTCTC | 6 cut(s) | 73, 163, 510, 580, 1468, 2301 |
| BstMCI | CGRYCG | 1 cut(s) | 781 |
| BstNI | CCWGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| BstNSI | RCATGY | 3 cut(s) | 122, 1926, 2166 |
| BstSCI | CCNGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| BstSLI | GKGCMC | 2 cut(s) | 2601, 3595 |
| BstUI | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| BstV1I | GCAGC | 8 cut(s) | 271, 670, 748, 751, 994, 1000, 3673, 3919 |
| BstX2I | RGATCY | 4 cut(s) | 1365, 3376, 3550, 3842 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 313, 923, 1154 |
| BstYI | RGATCY | 4 cut(s) | 1365, 3376, 3550, 3842 |
| BstZI | CGGCCG | 1 cut(s) | 778 |
| BtgI | CCRYGG | 7 cut(s) | 270, 709, 781, 1038, 2277, 2741, 2757 |
| BtsI | GCAGTG | 5 cut(s) | 225, 1306, 1479, 2046, 3002 |
| BtuMI | TCGCGA | 1 cut(s) | 594 |
| Cac8I | GCNNGC | 9 cut(s) | 120, 592, 706, 2072, 2164, 2928, 2932, 3497, 3737 |
| CciI | TCATGA | 2 cut(s) | 3724, 3964 |
| CfoI | GCGC | 3 cut(s) | 124, 720, 1737 |
| Cfr10I | RCCGGY | 2 cut(s) | 731, 3791 |
| Cfr13I | GGNCC | 6 cut(s) | 554, 670, 860, 1348, 3383, 3463 |
| CseI | GACGC | 2 cut(s) | 1450, 2738 |
| CsiI | ACCWGGT | 1 cut(s) | 922 |
| Csp6I | GTAC | 5 cut(s) | 99, 1132, 2831, 3420, 3677 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 307, 342 |
| CviQI | GTAC | 5 cut(s) | 99, 1132, 2831, 3420, 3677 |
| DdeI | CTNAG | 6 cut(s) | 407, 864, 2763, 3111, 3348, 3906 |
| DraI | TTTAAA | 7 cut(s) | 1515, 1702, 1758, 1882, 2145, 2244, 2893 |
| DraIII | CACNNNGTG | 1 cut(s) | 1150 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1678, 3305 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1678, 3305 |
| EaeI | YGGCCR | 5 cut(s) | 315, 706, 778, 3486, 3523 |
| EagI | CGGCCG | 1 cut(s) | 778 |
| Eam1104I | CTCTTC | 3 cut(s) | 13, 40, 2616 |
| EarI | CTCTTC | 3 cut(s) | 13, 40, 2616 |
| Ecl136II | GAGCTC | 2 cut(s) | 827, 3864 |
| EclXI | CGGCCG | 1 cut(s) | 778 |
| Eco130I | CCWWGG | 3 cut(s) | 270, 850, 2757 |
| Eco147I | AGGCCT | 3 cut(s) | 626, 1001, 2934 |
| Eco24I | GRGCYC | 2 cut(s) | 829, 3866 |
| Eco31I | GGTCTC | 1 cut(s) | 510 |
| Eco47I | GGWCC | 4 cut(s) | 554, 670, 1348, 3463 |
| Eco52I | CGGCCG | 1 cut(s) | 778 |
| Eco53kI | GAGCTC | 2 cut(s) | 827, 3864 |
| Eco57I | CTGAAG | 4 cut(s) | 980, 3090, 3581, 3921 |
| Eco88I | CYCGRG | 4 cut(s) | 499, 1125, 2637, 3212 |
| EcoICRI | GAGCTC | 2 cut(s) | 827, 3864 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1348, 3463 |
| EcoRII | CCWGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| EcoT14I | CCWWGG | 3 cut(s) | 270, 850, 2757 |
| EcoT22I | ATGCAT | 2 cut(s) | 2011, 2098 |
| EcoT38I | GRGCYC | 2 cut(s) | 829, 3866 |
| ErhI | CCWWGG | 3 cut(s) | 270, 850, 2757 |
| Esp3I | CGTCTC | 3 cut(s) | 163, 580, 1468 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1379, 1411, 1595, 1627, 2886, 2918 |
| FaqI | GGGAC | 5 cut(s) | 1239, 3222, 3427, 3476, 3603 |
| FauI | CCCGC | 3 cut(s) | 760, 1623, 2678 |
| FbaI | TGATCA | 2 cut(s) | 2382, 3727 |
| FblI | GTMKAC | 1 cut(s) | 1825 |
| FriOI | GRGCYC | 2 cut(s) | 829, 3866 |
| FspBI | CTAG | 5 cut(s) | 1485, 1530, 1589, 3203, 3401 |
| FspI | TGCGCA | 1 cut(s) | 123 |
| GlaI | GCGC | 3 cut(s) | 123, 719, 1736 |
| GsaI | CCCAGC | 1 cut(s) | 2255 |
| GsuI | CTGGAG | 2 cut(s) | 1098, 2698 |
| HapII | CCGG | 5 cut(s) | 732, 1381, 2209, 2354, 3792 |
| HgaI | GACGC | 2 cut(s) | 1450, 2738 |
| HhaI | GCGC | 3 cut(s) | 124, 720, 1737 |
| Hin1I | GRCGYC | 1 cut(s) | 2749 |
| Hin6I | GCGC | 3 cut(s) | 122, 718, 1735 |
| HinP1I | GCGC | 3 cut(s) | 122, 718, 1735 |
| HincII | GTYRAC | 3 cut(s) | 235, 1826, 3917 |
| HindII | GTYRAC | 3 cut(s) | 235, 1826, 3917 |
| HindIII | AAGCTT | 3 cut(s) | 89, 992, 1604 |
| HpaII | CCGG | 5 cut(s) | 732, 1381, 2209, 2354, 3792 |
| Hpy99I | CGWCG | 3 cut(s) | 651, 3531, 3813 |
| HpyCH4IV | ACGT | 9 cut(s) | 370, 646, 1960, 2024, 2951, 3036, 3142, 3291, 3877 |
| HpyF3I | CTNAG | 6 cut(s) | 407, 864, 2763, 3111, 3348, 3906 |
| HpySE526I | ACGT | 9 cut(s) | 370, 646, 1960, 2024, 2951, 3036, 3142, 3291, 3877 |
| Hsp92I | GRCGYC | 1 cut(s) | 2749 |
| HspAI | GCGC | 3 cut(s) | 122, 718, 1735 |
| Ksp22I | TGATCA | 2 cut(s) | 2382, 3727 |
| LmnI | GCTCC | 9 cut(s) | 824, 838, 1027, 1048, 1079, 1316, 2882, 3861, 3869 |
| Lsp1109I | GCAGC | 8 cut(s) | 271, 670, 748, 751, 994, 1000, 3673, 3919 |
| MabI | ACCWGGT | 1 cut(s) | 922 |
| MaeI | CTAG | 5 cut(s) | 1485, 1530, 1589, 3203, 3401 |
| MaeII | ACGT | 9 cut(s) | 370, 646, 1960, 2024, 2951, 3036, 3142, 3291, 3877 |
| MbiI | CCGCTC | 1 cut(s) | 2777 |
| MfeI | CAATTG | 2 cut(s) | 940, 3013 |
| MflI | RGATCY | 4 cut(s) | 1365, 3376, 3550, 3842 |
| MhlI | GDGCHC | 6 cut(s) | 829, 835, 2594, 2601, 3595, 3866 |
| MlsI | TGGCCA | 1 cut(s) | 317 |
| MluNI | TGGCCA | 1 cut(s) | 317 |
| MlyI | GAGTC | 6 cut(s) | 512, 670, 3150, 3204, 3230, 3333 |
| MmeI | TCCRAC | 4 cut(s) | 1263, 2806, 3012, 3049 |
| Mox20I | TGGCCA | 1 cut(s) | 317 |
| Mph1103I | ATGCAT | 2 cut(s) | 2011, 2098 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1394, 3047 |
| MscI | TGGCCA | 1 cut(s) | 317 |
| MslI | CAYNNNNRTG | 8 cut(s) | 435, 678, 1152, 1554, 1662, 2826, 3482, 3729 |
| Msp20I | TGGCCA | 1 cut(s) | 317 |
| MspA1I | CMGCKG | 2 cut(s) | 1013, 2251 |
| MspI | CCGG | 5 cut(s) | 732, 1381, 2209, 2354, 3792 |
| MspR9I | CCNGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| MunI | CAATTG | 2 cut(s) | 940, 3013 |
| Mva1269I | GAATGC | 2 cut(s) | 1905, 2652 |
| MvaI | CCWGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| MvnI | CGCG | 4 cut(s) | 594, 720, 1461, 1735 |
| NcoI | CCATGG | 2 cut(s) | 270, 2757 |
| NlaIV | GGNNCC | 9 cut(s) | 152, 640, 1044, 2794, 2878, 3061, 3265, 3464, 3592 |
| NmuCI | GTSAC | 8 cut(s) | 926, 1196, 1558, 1574, 1598, 1789, 2020, 3307 |
| NruI | TCGCGA | 1 cut(s) | 594 |
| NsbI | TGCGCA | 1 cut(s) | 123 |
| NsiI | ATGCAT | 2 cut(s) | 2011, 2098 |
| NspI | RCATGY | 3 cut(s) | 122, 1926, 2166 |
| NspV | TTCGAA | 1 cut(s) | 246 |
| PaeI | GCATGC | 2 cut(s) | 122, 2166 |
| PagI | TCATGA | 2 cut(s) | 3724, 3964 |
| PasI | CCCWGGG | 2 cut(s) | 3094, 3171 |
| PceI | AGGCCT | 3 cut(s) | 626, 1001, 2934 |
| PciI | ACATGT | 1 cut(s) | 1922 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 162, 778, 1966, 3703 |
| PctI | GAATGC | 2 cut(s) | 1905, 2652 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1394, 3047 |
| PfeI | GAWTC | 7 cut(s) | 29, 440, 811, 1073, 1870, 2800, 2856 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1550, 2844, 3177 |
| PleI | GAGTC | 6 cut(s) | 512, 669, 3150, 3204, 3230, 3333 |
| PpsI | GAGTC | 6 cut(s) | 512, 669, 3150, 3204, 3230, 3333 |
| PpuMI | RGGWCCY | 2 cut(s) | 1348, 3463 |
| PscI | ACATGT | 1 cut(s) | 1922 |
| PshBI | ATTAAT | 2 cut(s) | 2064, 2987 |
| Psp124BI | GAGCTC | 2 cut(s) | 829, 3866 |
| Psp1406I | AACGTT | 3 cut(s) | 370, 2951, 3142 |
| Psp5II | RGGWCCY | 2 cut(s) | 1348, 3463 |
| Psp6I | CCWGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| PspFI | CCCAGC | 1 cut(s) | 2251 |
| PspGI | CCWGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| PspN4I | GGNNCC | 9 cut(s) | 152, 640, 1044, 2794, 2878, 3061, 3265, 3464, 3592 |
| PspPI | GGNCC | 6 cut(s) | 554, 670, 860, 1348, 3383, 3463 |
| PspPPI | RGGWCCY | 2 cut(s) | 1348, 3463 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 522, 554, 950, 982 |
| PsuI | RGATCY | 4 cut(s) | 1365, 3376, 3550, 3842 |
| PvuII | CAGCTG | 1 cut(s) | 2251 |
| RruI | TCGCGA | 1 cut(s) | 594 |
| RsaI | GTAC | 5 cut(s) | 100, 1133, 2832, 3421, 3678 |
| RsaNI | GTAC | 5 cut(s) | 99, 1132, 2831, 3420, 3677 |
| RseI | CAYNNNNRTG | 8 cut(s) | 435, 678, 1152, 1554, 1662, 2826, 3482, 3729 |
| SacI | GAGCTC | 2 cut(s) | 829, 3866 |
| SalI | GTCGAC | 1 cut(s) | 1824 |
| Sau96I | GGNCC | 6 cut(s) | 554, 670, 860, 1348, 3383, 3463 |
| SchI | GAGTC | 6 cut(s) | 512, 670, 3150, 3204, 3230, 3333 |
| ScrFI | CCNGG | 7 cut(s) | 822, 924, 2797, 3095, 3172, 3446, 3522 |
| SduI | GDGCHC | 6 cut(s) | 829, 835, 2594, 2601, 3595, 3866 |
| SexAI | ACCWGGT | 1 cut(s) | 922 |
| SfuI | TTCGAA | 1 cut(s) | 246 |
| SinI | GGWCC | 4 cut(s) | 554, 670, 1348, 3463 |
| SmiI | ATTTAAAT | 1 cut(s) | 1702 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 435, 678, 1152, 1554, 1662, 2826, 3482, 3729 |
| SmlI | CTYRAG | 4 cut(s) | 585, 1050, 1188, 3892 |
| SmoI | CTYRAG | 4 cut(s) | 585, 1050, 1188, 3892 |
| SphI | GCATGC | 2 cut(s) | 122, 2166 |
| SseBI | AGGCCT | 3 cut(s) | 626, 1001, 2934 |
| SspI | AATATT | 3 cut(s) | 1273, 1706, 2578 |
| SspMI | CTAG | 5 cut(s) | 1485, 1530, 1589, 3203, 3401 |
| SstI | GAGCTC | 2 cut(s) | 829, 3866 |
| StuI | AGGCCT | 3 cut(s) | 626, 1001, 2934 |
| StyD4I | CCNGG | 7 cut(s) | 820, 922, 2795, 3093, 3170, 3444, 3520 |
| StyI | CCWWGG | 3 cut(s) | 270, 850, 2757 |
| SwaI | ATTTAAAT | 1 cut(s) | 1702 |
| TaiI | ACGT | 9 cut(s) | 373, 649, 1963, 2027, 2954, 3039, 3145, 3294, 3880 |
| TaqI | TCGA | 7 cut(s) | 246, 1688, 1825, 1969, 2883, 2937, 3337 |
| TatI | WGTACW | 2 cut(s) | 1131, 2830 |
| TauI | GCSGC | 4 cut(s) | 780, 1013, 1170, 2812 |
| TfiI | GAWTC | 7 cut(s) | 29, 440, 811, 1073, 1870, 2800, 2856 |
| TseFI | GTSAC | 8 cut(s) | 926, 1196, 1558, 1574, 1598, 1789, 2020, 3307 |
| TseI | GCWGC | 8 cut(s) | 259, 683, 761, 764, 1007, 1013, 3686, 3932 |
| Tsp45I | GTSAC | 8 cut(s) | 926, 1196, 1558, 1574, 1598, 1789, 2020, 3307 |
| TspGWI | ACGGA | 2 cut(s) | 286, 3168 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1550, 2844, 3177 |
| VpaK11BI | GGWCC | 4 cut(s) | 554, 670, 1348, 3463 |
| VspI | ATTAAT | 2 cut(s) | 2064, 2987 |
| XapI | RAATTY | 3 cut(s) | 1637, 2138, 2285 |
| XbaI | TCTAGA | 2 cut(s) | 1484, 3202 |
| XceI | RCATGY | 3 cut(s) | 122, 1926, 2166 |
| XmiI | GTMKAC | 1 cut(s) | 1825 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1394, 3047 |
| XspI | CTAG | 5 cut(s) | 1485, 1530, 1589, 3203, 3401 |
| Zsp2I | ATGCAT | 2 cut(s) | 2011, 2098 |