FvH4_6g33903

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000889
Physical Location & Seq
Reverse (-)
26841030 .. 26845523
4494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33903.t1

Sequence Viewer

Length: 900 bp
ATGGTGGATTTCAAAGCTATCAAAGGGAAGAGTGAAGCGTCTCAAATCTTGAGCTTCTACAGCATTGAAGGTAGAGATCTCTCAAAGGGTAATGTTTCCTTGACTAAGACTAAGGAAACTAGAGGTAAATTTGGTGTTGCTTTACATGTTGCTAACTTTACTGGTGGTGACACTTGGATAATTGATTCTGGGGCGTCAGATCATATGACCTATGATAAATCTTTCTTTGTGTCCATGTCATCTTCGTCTATCTCTCATGTCTCAAATGCAAATGGTGCATCTTTTCTAGTTTTAGGTATTGGGTCTGTTCAGGCTGCTATTGAAATTGCTCACAATCCTGTTCAACATGATCGCACAAAGCACGTGGAGGTAGATCGACATTTCATTAAAGAGAAGTTGGATGGTCAGATTATTTTCTTTCCTTTTGTTCCTTCTGAAGAACAATTAGCTGATATCCTTACGAAAGCTCTCTCAAGTAAAGCCTTTCATGACTCTCTTGACAAGTTGGGCATTGGTGATTTTTCTATACCTCAAATGGGAGTCTTAGGGGGTTCACTTTCTGTAAATGATGGACGCACGTTTTGGGTAATGATAGAGTACGGCGTCAAGGCTTCTTGGATCAAAGTGCTTCAAATTGGATATGGTACAATTCATTCTCTTACTGGCGATTTTAGAAGCAGTAGTGTCCAAGTTTTGAAAGTTATGGAGGAGGGGAAAGTTTATTTGTTGTTAGCAGATTACAAGTTATGGCTCTACACTCCTGAAACCATGAACCTTGTGAGGGTTGATGAAATTGATGGGATGCCATTAGGGCCTTTAAGTTTTGCGGTACACCATATTCCAACCTTTCTTTCTCCGAAGGATATTATTAAGGATTACAACTCCAAAGTACTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

300

Amino Acids

32.91

Weight (kDa)

6.25

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 59 - 108 4.6e-11 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 827
AclWI GGATC 1 cut(s) 626
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 456
AcvI CACGTG 1 cut(s) 364
AcyI GRCGYC 2 cut(s) 194, 603
AfaI GTAC 4 cut(s) 599, 646, 831, 891
AfiI CCNNNNNNNGG 2 cut(s) 536, 781
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 6 cut(s) 13, 68, 323, 344, 632, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AluBI AGCT 4 cut(s) 17, 54, 449, 467
AluI AGCT 4 cut(s) 17, 54, 449, 467
Alw26I GTCTC 2 cut(s) 45, 265
AlwI GGATC 1 cut(s) 626
AoxI GGCC 1 cut(s) 812
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 2 cut(s) 564, 596
AspS9I GGNCC 1 cut(s) 812
AsuHPI GGTGA 2 cut(s) 179, 527
BbrPI CACGTG 1 cut(s) 364
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 395, 563, 791
BceAI ACGGC 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 45, 265
BfaI CTAG 2 cut(s) 120, 287
BfmI CTRYAG 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 811
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 891
BmgT120I GGNCC 1 cut(s) 812
BmsI GCATC 2 cut(s) 287, 792
BpuEI CTTGAG 2 cut(s) 70, 457
BsaAI YACGTR 1 cut(s) 364
BsaHI GRCGYC 2 cut(s) 194, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 536, 781
Bse1I ACTGG 2 cut(s) 166, 667
BseGI GGATG 2 cut(s) 406, 807
BseLI CCNNNNNNNGG 2 cut(s) 536, 781
BseNI ACTGG 2 cut(s) 166, 667
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 1 cut(s) 814
BslI CCNNNNNNNGG 2 cut(s) 536, 781
BsmAI GTCTC 2 cut(s) 45, 265
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 814
Bsp143I GATC 5 cut(s) 76, 199, 349, 373, 618
BspACI CCGC 1 cut(s) 827
BspANI GGCC 1 cut(s) 814
BspHI TCATGA 1 cut(s) 487
BspPI GGATC 1 cut(s) 626
BsrI ACTGG 2 cut(s) 166, 667
BssMI GATC 5 cut(s) 76, 199, 349, 373, 618
BssNI GRCGYC 2 cut(s) 194, 603
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 2 cut(s) 194, 603
BstAPI GCANNNNNTGC 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 364
BstDEI CTNAG 4 cut(s) 105, 111, 544, 893
BstF5I GGATG 2 cut(s) 406, 807
BstKTI GATC 5 cut(s) 79, 202, 352, 376, 621
BstMAI GTCTC 2 cut(s) 45, 265
BstMBI GATC 5 cut(s) 76, 199, 349, 373, 618
BstMWI GCNNNNNNNGC 3 cut(s) 60, 275, 811
BstNSI RCATGY 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 814
BtsCI GGATG 2 cut(s) 406, 807
CciI TCATGA 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 812
CseI GACGC 4 cut(s) 27, 183, 582, 592
Csp6I GTAC 4 cut(s) 598, 645, 830, 890
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 6 cut(s) 146, 235, 257, 347, 488, 769
CviJI RGCY 9 cut(s) 17, 54, 314, 449, 467, 482, 611, 751, 814
CviKI_1 RGCY 9 cut(s) 17, 54, 314, 449, 467, 482, 611, 751, 814
CviQI GTAC 4 cut(s) 598, 645, 830, 890
DdeI CTNAG 4 cut(s) 105, 111, 544, 893
DpnI GATC 5 cut(s) 78, 201, 351, 375, 620
DpnII GATC 5 cut(s) 76, 199, 349, 373, 618
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 454
Eco57I CTGAAG 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 812
EcoRV GATATC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 6 cut(s) 149, 238, 260, 350, 491, 772
FatI CATG 6 cut(s) 145, 234, 256, 346, 487, 768
FauNDI CATATG 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 413, 814
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 120, 287
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 814
HgaI GACGC 4 cut(s) 27, 183, 582, 592
Hin1I GRCGYC 2 cut(s) 194, 603
Hin1II CATG 6 cut(s) 149, 238, 260, 350, 491, 772
HinfI GANTC 3 cut(s) 185, 491, 540
HphI GGTGA 2 cut(s) 179, 527
Hpy166II GTNNAC 2 cut(s) 554, 832
Hpy188I TCNGA 4 cut(s) 199, 408, 436, 858
Hpy188III TCNNGA 4 cut(s) 49, 488, 497, 761
Hpy8I GTNNAC 2 cut(s) 554, 832
HpyAV CCTTC 3 cut(s) 62, 441, 853
HpyCH4IV ACGT 2 cut(s) 363, 578
HpyCH4V TGCA 2 cut(s) 269, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 275, 811
HpyF3I CTNAG 4 cut(s) 105, 111, 544, 893
HpySE526I ACGT 2 cut(s) 363, 578
Hsp92I GRCGYC 2 cut(s) 194, 603
Hsp92II CATG 6 cut(s) 149, 238, 260, 350, 491, 772
Kzo9I GATC 5 cut(s) 76, 199, 349, 373, 618
LpnPI CCDG 6 cut(s) 147, 174, 296, 351, 648, 774
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 287, 792
MaeI CTAG 2 cut(s) 120, 287
MaeII ACGT 2 cut(s) 363, 578
MaeIII GTNAC 1 cut(s) 167
MalI GATC 5 cut(s) 78, 201, 351, 375, 620
MboI GATC 5 cut(s) 76, 199, 349, 373, 618
MboII GAAGA 3 cut(s) 40, 234, 449
MflI RGATCY 1 cut(s) 76
MluCI AATT 7 cut(s) 128, 180, 324, 443, 633, 648, 792
MlyI GAGTC 2 cut(s) 485, 549
MmeI TCCRAC 2 cut(s) 378, 866
MnlI CCTC 6 cut(s) 116, 361, 540, 700, 703, 774
MseI TTAA 4 cut(s) 387, 818, 870, 898
MwoI GCNNNNNNNGC 3 cut(s) 60, 275, 811
NdeI CATATG 1 cut(s) 204
NdeII GATC 5 cut(s) 76, 199, 349, 373, 618
NlaIII CATG 6 cut(s) 149, 238, 260, 350, 491, 772
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 149
PagI TCATGA 1 cut(s) 487
PciI ACATGT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 2 cut(s) 485, 548
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
PpsI GAGTC 2 cut(s) 485, 548
Ppu21I YACGTR 1 cut(s) 364
PscI ACATGT 1 cut(s) 145
PspCI CACGTG 1 cut(s) 364
PspPI GGNCC 1 cut(s) 812
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 4 cut(s) 599, 646, 831, 891
RsaNI GTAC 4 cut(s) 598, 645, 830, 890
SaqAI TTAA 4 cut(s) 387, 818, 870, 898
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 5 cut(s) 76, 199, 349, 373, 618
Sau96I GGNCC 1 cut(s) 812
ScaI AGTACT 1 cut(s) 891
SchI GAGTC 2 cut(s) 485, 549
SfaNI GCATC 2 cut(s) 287, 792
SfcI CTRYAG 1 cut(s) 58
SmlI CTYRAG 2 cut(s) 49, 472
SmoI CTYRAG 2 cut(s) 49, 472
Sse9I AATT 7 cut(s) 128, 180, 324, 443, 633, 648, 792
SsiI CCGC 1 cut(s) 827
SspMI CTAG 2 cut(s) 120, 287
TaiI ACGT 2 cut(s) 366, 581
TaqI TCGA 1 cut(s) 376
TasI AATT 7 cut(s) 128, 180, 324, 443, 633, 648, 792
TatI WGTACW 1 cut(s) 889
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 4 cut(s) 387, 818, 870, 898
Tru9I TTAA 4 cut(s) 387, 818, 870, 898
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 5 cut(s) 373, 476, 641, 785, 804
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 149
XspI CTAG 2 cut(s) 120, 287
ZrmI AGTACT 1 cut(s) 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.