pycom15g35310

calcium-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
35239403 .. 35240164
762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g35310.2

Sequence Viewer

Length: 381 bp
ATGACCTTATTTTGTGACAACCAAGCTGCCATGCACATAGCATCAAACCCCGTCTTTCACGAGAGGACGAAGCATATTGAAGTCGACTGTCACTATGTCCGTGAACAAGTACAGTCGCAGGTGATTCAGACACATTATGTAAAAAGCTTCGATCAGCTGGCTGATATATTCACCAAACCTCTGGCTTCTCATCAGTTTCAAAGACTCCTCTCCAAGCTTGGATCCATCAACCTACTGGATCCAACCGGTTGTACAGAAGAAGAATTTACAATAATACAAGAGGAAAGTCTTTCCTATTTGCCTTCTCCAATTACATTTTCCACTGTGGTTCACTTGCACAATAACAATAGAGAAATCGACATACAAAGTGACAAAAAATGA
Functional Annotation

Protein Analysis

127

Amino Acids

14.53

Weight (kDa)

5.67

Isoelectric Point (pI)

66.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 84
AclWI GGATC 4 cut(s) 216, 229, 233, 246
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 2 cut(s) 111, 253
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 80, 200
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 4 cut(s) 26, 147, 157, 217
AluI AGCT 4 cut(s) 26, 147, 157, 217
AlwI GGATC 4 cut(s) 216, 229, 233, 246
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 263
AsiGI ACCGGT 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 133, 163
BamHI GGATCC 2 cut(s) 221, 238
BauI CACGAG 1 cut(s) 59
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 223, 240
BmsI GCATC 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 13
BshTI ACCGGT 1 cut(s) 245
BsiSI CCGG 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 251
Bsp143I GATC 3 cut(s) 151, 221, 238
BspLI GGNNCC 2 cut(s) 223, 240
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 4 cut(s) 216, 229, 233, 246
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 245
BssMI GATC 3 cut(s) 151, 221, 238
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 89, 114, 325
BstAUI TGTACA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 159
BstKTI GATC 3 cut(s) 154, 224, 241
BstMBI GATC 3 cut(s) 151, 221, 238
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 2 cut(s) 221, 238
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 221, 238
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 245
Csp6I GTAC 2 cut(s) 110, 252
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 26, 147, 157, 161, 185, 217
CviKI_1 RGCY 6 cut(s) 26, 147, 157, 161, 185, 217
CviQI GTAC 2 cut(s) 110, 252
DpnI GATC 3 cut(s) 153, 223, 240
DpnII GATC 3 cut(s) 151, 221, 238
FaeI CATG 1 cut(s) 34
FaiI YATR 7 cut(s) 32, 38, 75, 96, 138, 167, 362
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HapII CCGG 1 cut(s) 246
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 2 cut(s) 145, 215
HinfI GANTC 2 cut(s) 124, 204
HpaII CCGG 1 cut(s) 246
HphI GGTGA 2 cut(s) 133, 163
Hpy166II GTNNAC 3 cut(s) 85, 104, 331
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 3 cut(s) 85, 104, 331
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 3 cut(s) 89, 114, 325
HpyCH4V TGCA 2 cut(s) 34, 337
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 3 cut(s) 151, 221, 238
LpnPI CCDG 5 cut(s) 104, 143, 167, 221, 259
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 50
MaeIII GTNAC 3 cut(s) 14, 89, 368
MalI GATC 3 cut(s) 153, 223, 240
MboI GATC 3 cut(s) 151, 221, 238
MboII GAAGA 2 cut(s) 269, 272
MflI RGATCY 2 cut(s) 221, 238
MluCI AATT 2 cut(s) 263, 309
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 4 cut(s) 57, 189, 218, 274
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 246
NdeII GATC 3 cut(s) 151, 221, 238
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 223, 240
NmuCI GTSAC 3 cut(s) 14, 89, 368
PaqCI CACCTGC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 223, 240
PsuI RGATCY 2 cut(s) 221, 238
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 111, 253
RsaNI GTAC 2 cut(s) 110, 252
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 151, 221, 238
SchI GAGTC 1 cut(s) 198
SetI ASST 8 cut(s) 8, 28, 123, 149, 159, 181, 219, 234
SfaNI GCATC 1 cut(s) 50
Sse9I AATT 2 cut(s) 263, 309
TaaI ACNGT 3 cut(s) 89, 114, 325
TaqI TCGA 3 cut(s) 84, 150, 357
TasI AATT 2 cut(s) 263, 309
TatI WGTACW 2 cut(s) 109, 251
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 3 cut(s) 14, 89, 368
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 3 cut(s) 14, 89, 368
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 328
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.