Rroxscaffold_1G00010990

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000889
Physical Location & Seq
Forward (+)
14021541 .. 14023574
2034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010990.1

Sequence Viewer

Length: 369 bp
ATGCAGCAACCACGGGGTTTCATTAATCCACAATTTCCTACCTATGTTTGTAAGCTCTGCAGTTCTCTCTATGGCCTCAAACAAGCACCTCGGGCTTGGTTTTCTTGTTTCTCTGCTTATTTGGAGGACTTGGGTTTCACAGAGCATCTCAAGAAGACTCTTATCTATTTGTTTATCATTCGGGCAATATCAAGTTTTATTTACTTATATATGTGGATGATATCCTTATCAGCGGCATACATACTTGATCACATCGGTACTCTTATCACTAATTTGAGTAAACTCTTCTCCATGAAAGATTTGGGTCCATTACACTATTTCTTGGGCATTGAGGCTGTGCGGTCCTCTCATGGCCTTGCTTTAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

9.05

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 1 - 121 8.4e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 233, 340
AfaI GTAC 1 cut(s) 259
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 2 cut(s) 73, 352
ApeKI GCWGC 1 cut(s) 4
AseI ATTAAT 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 305, 342
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 2 cut(s) 305, 342
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 16
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 2 cut(s) 5, 234
BlsI GCNGC 2 cut(s) 6, 235
Bme18I GGWCC 2 cut(s) 305, 342
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 2 cut(s) 305, 342
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 11, 89
BseDI CCNNGG 2 cut(s) 11, 89
BseGI GGATG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 75, 354
BsiHKCI CYCGRG 1 cut(s) 90
BsnI GGCC 2 cut(s) 75, 354
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 233, 340
BspANI GGCC 2 cut(s) 75, 354
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 11, 89
BssMI GATC 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 2 cut(s) 75, 354
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 305, 342
Csp6I GTAC 1 cut(s) 258
CviAII CATG 2 cut(s) 292, 350
CviJI RGCY 5 cut(s) 55, 75, 95, 335, 354
CviKI_1 RGCY 5 cut(s) 55, 75, 95, 335, 354
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 366
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 305, 342
Eco88I CYCGRG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 222
FaeI CATG 2 cut(s) 295, 353
FaiI YATR 9 cut(s) 45, 72, 208, 210, 212, 238, 242, 293, 351
FatI CATG 2 cut(s) 291, 349
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 5, 234
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 5, 234
GluI GCNGC 2 cut(s) 5, 234
HaeIII GGCC 2 cut(s) 75, 354
Hin1II CATG 2 cut(s) 295, 353
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 4, 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 2 cut(s) 295, 353
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 154
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 166, 277
MluCI AATT 2 cut(s) 32, 271
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 5 cut(s) 86, 99, 118, 325, 355
MseI TTAA 2 cut(s) 24, 362
MspA1I CMGCKG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 295, 353
NlaIV GGNNCC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 6, 235
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 2 cut(s) 305, 342
PstI CTGCAG 1 cut(s) 62
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 24, 362
SatI GCNGC 2 cut(s) 5, 234
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 2 cut(s) 305, 342
SchI GAGTC 1 cut(s) 151
SetI ASST 3 cut(s) 44, 57, 91
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 2 cut(s) 305, 342
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 32, 271
SsiI CCGC 2 cut(s) 233, 340
TasI AATT 2 cut(s) 32, 271
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 24, 362
Tru9I TTAA 2 cut(s) 24, 362
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 10, 308
VpaK11BI GGWCC 2 cut(s) 305, 342
VspI ATTAAT 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.