RchiOBHm_Chr2g0153961

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000889
Physical Location & Seq
Reverse (-)
71168650 .. 71170470
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52302

Sequence Viewer

Length: 741 bp
ATGATTAATGCCAAACCCTTTGCCACTCCAGCTGTTAGTGGTAAACTTTTGAGTATTCATGATGGTGATGCCTTATCTGATCCTACTGTTTTTCAAAGTGTTGTCGAAGCCCTTCAATACCTCACAATCACACATCCAGATATTTTCTTTGTTGTTAATCAAGTATGTCAATTTTTACATAAACCTACTAACACACATTGGGTTGCAGTGAAGCGTATTCTCAGGTACATCAAGAAAACTCACAATCATGGTCTCCTTTATAGGCCTGGTTCTCTCAATATAAATGCTTTCTCTGATGCGGACTATGCTGGAGATCCGGATGACCGAATATCTACCGGTGGCTCTTGCATCTATTTGGGTCCTAATCTAATCTCTTGGTCTTCTACGAAACAAGGAGGTGTCTCTCGATCAAGCACAGAAGCTGAATATCGTCAGCTAGCTTATACGGCAGCAACCATTTCATGGTTTAGACATCTATTCAAATACTTCAAATTGCCTCTCTCATGTCCCACTTTATGGTGTGACAATATCAGCGCTCTTTCTCTAGCATCTAATCCAGTATTTCACAGCCGTACTCTCCATGTAGAGGTAGATTATCACTATGTACGTGAAAAGGTGGTTCGTCGTGAGCTTACAGTTCGTTATCTCTGCACAACTGATATGATTGCAGATCTATTTATCAAAGGTTTGCCATCCGCTAGATTCTCTTCTCTAGTTCTCAAGCTTCCTATTCGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

246

Amino Acids

27.69

Weight (kDa)

9.18

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 462, 516
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 2 cut(s) 299, 696
AclWI GGATC 2 cut(s) 74, 308
AfaI GTAC 3 cut(s) 227, 574, 606
AfeI AGCGCT 1 cut(s) 535
AfiI CCNNNNNNNGG 3 cut(s) 462, 516, 586
AgeI ACCGGT 1 cut(s) 335
AgsI TTSAA 4 cut(s) 95, 116, 481, 490
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 6 cut(s) 32, 422, 436, 440, 631, 724
AluI AGCT 6 cut(s) 32, 422, 436, 440, 631, 724
Alw26I GTCTC 2 cut(s) 257, 406
AlwI GGATC 2 cut(s) 74, 308
AlwNI CAGNNNCTG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 316
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 449
AseI ATTAAT 1 cut(s) 6
AsiGI ACCGGT 1 cut(s) 335
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 77
AsuNHI GCTAGC 1 cut(s) 436
AvaII GGWCC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 461
BccI CCATC 2 cut(s) 56, 700
BceAI ACGGC 2 cut(s) 462, 555
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 257, 406
BfaI CTAG 4 cut(s) 437, 545, 699, 713
BfoI RGCGCY 1 cut(s) 537
BglII AGATCT 1 cut(s) 670
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 4 cut(s) 58, 286, 357, 557
BmtI GCTAGC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 2 cut(s) 12, 330
BpuEI CTTGAG 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 257
BsaWI WCCGGW 2 cut(s) 316, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 462, 516, 586
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 3 cut(s) 133, 325, 692
BseLI CCNNNNNNNGG 3 cut(s) 462, 516, 586
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 557
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 634
BshFI GGCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 335
BsiSI CCGG 2 cut(s) 317, 336
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 3 cut(s) 462, 516, 586
BsmAI GTCTC 2 cut(s) 257, 406
BsmFI GGGAC 1 cut(s) 492
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 79, 313, 407, 670
BspACI CCGC 2 cut(s) 299, 696
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 1 cut(s) 234
BspEI TCCGGA 1 cut(s) 316
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 360
BspOI GCTAGC 1 cut(s) 440
BspPI GGATC 2 cut(s) 74, 308
BspTNI GGTCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 557
BssAI RCCGGY 1 cut(s) 335
BssMI GATC 4 cut(s) 79, 313, 407, 670
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 88, 637
Bst6I CTCTTC 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 221
BstF5I GGATG 3 cut(s) 133, 325, 692
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 4 cut(s) 82, 316, 410, 673
BstMAI GTCTC 2 cut(s) 257, 406
BstMBI GATC 4 cut(s) 79, 313, 407, 670
BstMWI GCNNNNNNNGC 3 cut(s) 29, 305, 446
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 2 cut(s) 313, 670
BstYI RGATCY 2 cut(s) 313, 670
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 133, 325, 692
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 3 cut(s) 226, 573, 605
CspAI ACCGGT 1 cut(s) 335
CviAII CATG 6 cut(s) 59, 248, 462, 504, 581, 738
CviQI GTAC 3 cut(s) 226, 573, 605
DdeI CTNAG 1 cut(s) 221
DpnI GATC 4 cut(s) 81, 315, 409, 672
DpnII GATC 4 cut(s) 79, 313, 407, 670
Eam1104I CTCTTC 1 cut(s) 712
EarI CTCTTC 1 cut(s) 712
Eco147I AGGCCT 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 359
Eco47III AGCGCT 1 cut(s) 535
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 6 cut(s) 62, 251, 465, 507, 584, 741
FaqI GGGAC 1 cut(s) 492
FatI CATG 6 cut(s) 58, 247, 461, 503, 580, 737
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 3 cut(s) 120, 332, 679
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 4 cut(s) 437, 545, 699, 713
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 450
GsuI CTGGAG 2 cut(s) 12, 330
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 317, 336
HhaI GCGC 1 cut(s) 536
Hin1II CATG 6 cut(s) 62, 251, 465, 507, 584, 741
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 1 cut(s) 702
HpaII CCGG 2 cut(s) 317, 336
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 79, 295
Hpy188III TCNNGA 6 cut(s) 59, 137, 232, 317, 405, 626
Hpy8I GTNNAC 1 cut(s) 44
Hpy99I CGWCG 1 cut(s) 627
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 88, 637
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 5 cut(s) 206, 348, 651, 668, 737
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 305, 446
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 607
Hsp92II CATG 6 cut(s) 62, 251, 465, 507, 584, 741
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 79, 313, 407, 670
LpnPI CCDG 9 cut(s) 42, 150, 208, 252, 279, 294, 330, 349, 570
Lsp1109I GCAGC 1 cut(s) 461
LweI GCATC 4 cut(s) 58, 286, 357, 557
MaeI CTAG 4 cut(s) 437, 545, 699, 713
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 81, 315, 409, 672
MboI GATC 4 cut(s) 79, 313, 407, 670
MboII GAAGA 2 cut(s) 372, 699
MflI RGATCY 2 cut(s) 313, 670
MluCI AATT 2 cut(s) 170, 491
MnlI CCTC 4 cut(s) 131, 389, 507, 580
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 6, 156
MslI CAYNNNNRTG 2 cut(s) 63, 246
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 317, 336
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 29, 305, 446
NdeII GATC 4 cut(s) 79, 313, 407, 670
NheI GCTAGC 1 cut(s) 436
NlaIII CATG 6 cut(s) 62, 251, 465, 507, 584, 741
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 521
PagI TCATGA 1 cut(s) 58
PceI AGGCCT 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 702
PflMI CCANNNNNTGG 2 cut(s) 462, 516
PinAI ACCGGT 1 cut(s) 335
PkrI GCNGC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 608
PpuMI RGGWCCY 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 359
PspPPI RGGWCCY 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 313, 670
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 3 cut(s) 227, 574, 606
RsaNI GTAC 3 cut(s) 226, 573, 605
RseI CAYNNNNRTG 2 cut(s) 63, 246
SaqAI TTAA 2 cut(s) 6, 156
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 79, 313, 407, 670
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 267
SfaNI GCATC 4 cut(s) 58, 286, 357, 557
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 63, 246
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 2 cut(s) 170, 491
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 2 cut(s) 299, 696
SspMI CTAG 4 cut(s) 437, 545, 699, 713
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 88, 637
TaiI ACGT 1 cut(s) 610
TaqI TCGA 2 cut(s) 105, 406
TaqII GACCGA 1 cut(s) 339
TasI AATT 2 cut(s) 170, 491
TfiI GAWTC 1 cut(s) 702
Tru1I TTAA 2 cut(s) 6, 156
Tru9I TTAA 2 cut(s) 6, 156
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 2 cut(s) 47, 450
TspRI CASTG 1 cut(s) 213
Van91I CCANNNNNTGG 2 cut(s) 462, 516
VpaK11BI GGWCC 1 cut(s) 359
VspI ATTAAT 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 4 cut(s) 437, 545, 699, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.