Mitochondrial protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 51 - 221 | 2.2e-17 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 351 - 429 | 5.6e-08 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 482 - 529 | 5e-10 | GAG-pre-integrase domain |
| rve | PF00665 | 544 - 642 | 3.1e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 716 - 777 | 1.4e-21 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 917 - 1158 | 2.9e-73 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2769 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 695 |
| AatII | GACGTC | 3 cut(s) | 730, 841, 1664 |
| Acc36I | ACCTGC | 3 cut(s) | 854, 2678, 3933 |
| AccB1I | GGYRCC | 2 cut(s) | 1184, 1542 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1050, 2584, 3686 |
| AccBSI | CCGCTC | 2 cut(s) | 1344, 4183 |
| AccI | GTMKAC | 1 cut(s) | 3698 |
| AccII | CGCG | 1 cut(s) | 423 |
| AccIII | TCCGGA | 2 cut(s) | 3531, 3754 |
| AclI | AACGTT | 1 cut(s) | 78 |
| AclWI | GGATC | 8 cut(s) | 262, 275, 544, 1085, 1348, 1361, 3056, 3746 |
| AcoI | YGGCCR | 1 cut(s) | 2862 |
| AcsI | RAATTY | 6 cut(s) | 1612, 1781, 1805, 2419, 2690, 2723 |
| AcuI | CTGAAG | 2 cut(s) | 675, 2043 |
| AcvI | CACGTG | 1 cut(s) | 2594 |
| AcyI | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| AfaI | GTAC | 4 cut(s) | 1020, 1121, 3433, 3782 |
| AflIII | ACRYGT | 5 cut(s) | 811, 2175, 2290, 2591, 3079 |
| AhlI | ACTAGT | 1 cut(s) | 302 |
| AjnI | CCWGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2976, 3008, 4059, 4091 |
| AleI | CACNNNNGTG | 1 cut(s) | 405 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 252, 284 |
| Alw21I | GWGCWC | 3 cut(s) | 985, 3550, 3712 |
| Alw26I | GTCTC | 8 cut(s) | 681, 992, 1982, 2353, 2506, 3463, 3491, 3846 |
| Alw44I | GTGCAC | 1 cut(s) | 3546 |
| AlwI | GGATC | 8 cut(s) | 262, 275, 544, 1085, 1348, 1361, 3056, 3746 |
| Ama87I | CYCGRG | 2 cut(s) | 603, 1345 |
| Aor13HI | TCCGGA | 2 cut(s) | 3531, 3754 |
| AoxI | GGCC | 9 cut(s) | 360, 766, 967, 1366, 2862, 2972, 3120, 3177, 3688 |
| ApaLI | GTGCAC | 1 cut(s) | 3546 |
| ApoI | RAATTY | 6 cut(s) | 1612, 1781, 1805, 2419, 2690, 2723 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1286, 1318, 1942, 1974, 3794, 3826 |
| AseI | ATTAAT | 2 cut(s) | 2052, 3239 |
| AspA2I | CCTAGG | 1 cut(s) | 3125 |
| AspLEI | GCGC | 1 cut(s) | 3099 |
| AspS9I | GGNCC | 7 cut(s) | 379, 566, 866, 2761, 3121, 3338, 3797 |
| AsuHPI | GGTGA | 8 cut(s) | 461, 656, 1910, 2449, 2500, 2932, 3559, 3706 |
| AsuII | TTCGAA | 1 cut(s) | 258 |
| AvaI | CYCGRG | 2 cut(s) | 603, 1345 |
| AvaII | GGWCC | 6 cut(s) | 379, 566, 866, 2761, 3338, 3797 |
| AvrII | CCTAGG | 1 cut(s) | 3125 |
| BaeGI | GKGCMC | 4 cut(s) | 136, 200, 2750, 3550 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1002, 1035 |
| BalI | TGGCCA | 1 cut(s) | 2864 |
| BamHI | GGATCC | 2 cut(s) | 267, 1353 |
| BanI | GGYRCC | 2 cut(s) | 1184, 1542 |
| BanII | GRGCYC | 1 cut(s) | 3712 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 940, 972 |
| BbrPI | CACGTG | 1 cut(s) | 2594 |
| BbsI | GAAGAC | 2 cut(s) | 48, 2269 |
| Bbv12I | GWGCWC | 3 cut(s) | 985, 3550, 3712 |
| BceAI | ACGGC | 3 cut(s) | 753, 954, 3517 |
| BciT130I | CCWGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| BclI | TGATCA | 2 cut(s) | 496, 3297 |
| BcoDI | GTCTC | 8 cut(s) | 681, 992, 1982, 2353, 2506, 3463, 3491, 3846 |
| BcuI | ACTAGT | 1 cut(s) | 302 |
| BfaI | CTAG | 8 cut(s) | 303, 1209, 1473, 1521, 1539, 3126, 3378, 3849 |
| BfmI | CTRYAG | 5 cut(s) | 2559, 2674, 3048, 3468, 3885 |
| BfoI | RGCGCY | 1 cut(s) | 3100 |
| BfuAI | ACCTGC | 3 cut(s) | 854, 2678, 3933 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 368, 1578, 3128 |
| BglII | AGATCT | 1 cut(s) | 3331 |
| BlnI | CCTAGG | 1 cut(s) | 3125 |
| BlpI | GCTNAGC | 1 cut(s) | 4184 |
| Bme1390I | CCNGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| Bme18I | GGWCC | 6 cut(s) | 379, 566, 866, 2761, 3338, 3797 |
| BmeT110I | CYCGRG | 2 cut(s) | 603, 1345 |
| BmgT120I | GGNCC | 7 cut(s) | 379, 566, 866, 2761, 3121, 3338, 3797 |
| BmiI | GGNNCC | 8 cut(s) | 269, 868, 1186, 1355, 1544, 2763, 3123, 3137 |
| BmrFI | CCNGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| BmrI | ACTGGG | 2 cut(s) | 130, 1018 |
| BmsI | GCATC | 6 cut(s) | 159, 1040, 1237, 2006, 3625, 3937 |
| BmuI | ACTGGG | 2 cut(s) | 130, 1018 |
| BpiI | GAAGAC | 2 cut(s) | 48, 2269 |
| BpmI | CTGGAG | 4 cut(s) | 705, 1086, 3726, 3835 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4184 |
| Bpu14I | TTCGAA | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 1 cut(s) | 1381 |
| BsaAI | YACGTR | 1 cut(s) | 2594 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2370 |
| BsaHI | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| BsaI | GGTCTC | 1 cut(s) | 1982 |
| BsaJI | CCNNGG | 8 cut(s) | 263, 357, 489, 757, 769, 844, 3125, 3166 |
| BsaWI | WCCGGW | 2 cut(s) | 3531, 3754 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1434, 1464, 2518, 2548 |
| Bse118I | RCCGGY | 1 cut(s) | 4173 |
| Bse1I | ACTGG | 9 cut(s) | 136, 1024, 1384, 1978, 2915, 2991, 3607, 3641, 3778 |
| Bse3DI | GCAATG | 2 cut(s) | 522, 638 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2370 |
| BseAI | TCCGGA | 2 cut(s) | 3531, 3754 |
| BseBI | CCWGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| BseDI | CCNNGG | 8 cut(s) | 263, 357, 489, 757, 769, 844, 3125, 3166 |
| BseJI | GATNNNNATC | 1 cut(s) | 2370 |
| BseMI | GCAATG | 2 cut(s) | 522, 638 |
| BseMII | CTCAG | 7 cut(s) | 206, 469, 661, 2347, 3502, 4198, 4313 |
| BseNI | ACTGG | 9 cut(s) | 136, 1024, 1384, 1978, 2915, 2991, 3607, 3641, 3778 |
| BseRI | GAGGAG | 3 cut(s) | 306, 1860, 3933 |
| BseSI | GKGCMC | 4 cut(s) | 136, 200, 2750, 3550 |
| BsgI | GTGCAG | 2 cut(s) | 882, 987 |
| Bsh1236I | CGCG | 1 cut(s) | 423 |
| BshFI | GGCC | 9 cut(s) | 362, 768, 969, 1368, 2864, 2974, 3122, 3179, 3690 |
| BshNI | GGYRCC | 2 cut(s) | 1184, 1542 |
| BsiHKAI | GWGCWC | 3 cut(s) | 985, 3550, 3712 |
| BsiHKCI | CYCGRG | 2 cut(s) | 603, 1345 |
| BsiSI | CCGG | 5 cut(s) | 442, 1369, 3532, 3755, 4174 |
| BslFI | GGGAC | 5 cut(s) | 825, 852, 1648, 2401, 2747 |
| BsmAI | GTCTC | 8 cut(s) | 681, 992, 1982, 2353, 2506, 3463, 3491, 3846 |
| BsmBI | CGTCTC | 4 cut(s) | 992, 2353, 2506, 3491 |
| BsmFI | GGGAC | 5 cut(s) | 825, 852, 1648, 2401, 2747 |
| BsmI | GAATGC | 2 cut(s) | 1893, 3387 |
| BsnI | GGCC | 9 cut(s) | 362, 768, 969, 1368, 2864, 2974, 3122, 3179, 3690 |
| Bso31I | GGTCTC | 1 cut(s) | 1982 |
| BsoBI | CYCGRG | 2 cut(s) | 603, 1345 |
| Bsp119I | TTCGAA | 1 cut(s) | 258 |
| Bsp1286I | GDGCHC | 6 cut(s) | 136, 200, 985, 2750, 3550, 3712 |
| Bsp13I | TCCGGA | 2 cut(s) | 3531, 3754 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4184 |
| Bsp19I | CCATGG | 1 cut(s) | 844 |
| BspANI | GGCC | 9 cut(s) | 362, 768, 969, 1368, 2864, 2974, 3122, 3179, 3690 |
| BspCNI | CTCAG | 7 cut(s) | 205, 468, 660, 2346, 3501, 4197, 4312 |
| BspEI | TCCGGA | 2 cut(s) | 3531, 3754 |
| BspFNI | CGCG | 1 cut(s) | 423 |
| BspHI | TCATGA | 1 cut(s) | 2323 |
| BspLI | GGNNCC | 8 cut(s) | 269, 868, 1186, 1355, 1544, 2763, 3123, 3137 |
| BspMAI | CTGCAG | 2 cut(s) | 3472, 3889 |
| BspMI | ACCTGC | 3 cut(s) | 854, 2678, 3933 |
| BspPI | GGATC | 8 cut(s) | 262, 275, 544, 1085, 1348, 1361, 3056, 3746 |
| BspQI | GCTCTTC | 1 cut(s) | 3920 |
| BspT104I | TTCGAA | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 1184, 1542 |
| BspTNI | GGTCTC | 1 cut(s) | 1982 |
| BsrBI | CCGCTC | 2 cut(s) | 1344, 4183 |
| BsrDI | GCAATG | 2 cut(s) | 522, 638 |
| BsrFI | RCCGGY | 1 cut(s) | 4173 |
| BsrI | ACTGG | 9 cut(s) | 136, 1024, 1384, 1978, 2915, 2991, 3607, 3641, 3778 |
| BssAI | RCCGGY | 1 cut(s) | 4173 |
| BssECI | CCNNGG | 8 cut(s) | 263, 357, 489, 757, 769, 844, 3125, 3166 |
| BssNAI | GTATAC | 1 cut(s) | 3699 |
| BssNI | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| BssT1I | CCWWGG | 4 cut(s) | 263, 489, 844, 3125 |
| Bst1107I | GTATAC | 1 cut(s) | 3699 |
| Bst2UI | CCWGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| Bst6I | CTCTTC | 5 cut(s) | 260, 877, 1288, 1989, 3920 |
| BstACI | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstBAI | YACGTR | 1 cut(s) | 2594 |
| BstBI | TTCGAA | 1 cut(s) | 258 |
| BstDSI | CCRYGG | 3 cut(s) | 757, 769, 844 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 831 |
| BstFNI | CGCG | 1 cut(s) | 423 |
| BstH2I | RGCGCY | 1 cut(s) | 3100 |
| BstHHI | GCGC | 1 cut(s) | 3099 |
| BstMAI | GTCTC | 8 cut(s) | 681, 992, 1982, 2353, 2506, 3463, 3491, 3846 |
| BstNI | CCWGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| BstNSI | RCATGY | 7 cut(s) | 332, 815, 1914, 2179, 2294, 3083, 4277 |
| BstSCI | CCNGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| BstSFI | CTRYAG | 5 cut(s) | 2559, 2674, 3048, 3468, 3885 |
| BstSLI | GKGCMC | 4 cut(s) | 136, 200, 2750, 3550 |
| BstUI | CGCG | 1 cut(s) | 423 |
| BstV2I | GAAGAC | 2 cut(s) | 48, 2269 |
| BstX2I | RGATCY | 4 cut(s) | 267, 1353, 3331, 3751 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2799, 3954 |
| BstYI | RGATCY | 4 cut(s) | 267, 1353, 3331, 3751 |
| BstZ17I | GTATAC | 1 cut(s) | 3699 |
| BsuRI | GGCC | 9 cut(s) | 362, 768, 969, 1368, 2864, 2974, 3122, 3179, 3690 |
| BtgI | CCRYGG | 3 cut(s) | 757, 769, 844 |
| BtgZI | GCGATG | 1 cut(s) | 3356 |
| BtsI | GCAGTG | 2 cut(s) | 2649, 3720 |
| BveI | ACCTGC | 3 cut(s) | 854, 2678, 3933 |
| CciI | TCATGA | 1 cut(s) | 2323 |
| CfoI | GCGC | 1 cut(s) | 3099 |
| Cfr10I | RCCGGY | 1 cut(s) | 4173 |
| Cfr13I | GGNCC | 7 cut(s) | 379, 566, 866, 2761, 3121, 3338, 3797 |
| CsiI | ACCWGGT | 2 cut(s) | 2884, 3597 |
| Csp6I | GTAC | 4 cut(s) | 1019, 1120, 3432, 3781 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3423, 3458 |
| CviQI | GTAC | 4 cut(s) | 1019, 1120, 3432, 3781 |
| DraI | TTTAAA | 1 cut(s) | 1503 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 695 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 695 |
| EaeI | YGGCCR | 1 cut(s) | 2862 |
| Eam1104I | CTCTTC | 5 cut(s) | 260, 877, 1288, 1989, 3920 |
| EarI | CTCTTC | 5 cut(s) | 260, 877, 1288, 1989, 3920 |
| EciI | GGCGGA | 1 cut(s) | 2927 |
| Ecl136II | GAGCTC | 1 cut(s) | 3710 |
| Eco130I | CCWWGG | 4 cut(s) | 263, 489, 844, 3125 |
| Eco147I | AGGCCT | 1 cut(s) | 362 |
| Eco24I | GRGCYC | 1 cut(s) | 3712 |
| Eco31I | GGTCTC | 1 cut(s) | 1982 |
| Eco32I | GATATC | 1 cut(s) | 1339 |
| Eco47I | GGWCC | 6 cut(s) | 379, 566, 866, 2761, 3338, 3797 |
| Eco53kI | GAGCTC | 1 cut(s) | 3710 |
| Eco57I | CTGAAG | 2 cut(s) | 675, 2043 |
| Eco72I | CACGTG | 1 cut(s) | 2594 |
| Eco88I | CYCGRG | 2 cut(s) | 603, 1345 |
| EcoICRI | GAGCTC | 1 cut(s) | 3710 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 831 |
| EcoO109I | RGGNCCY | 2 cut(s) | 866, 3121 |
| EcoRI | GAATTC | 1 cut(s) | 2723 |
| EcoRII | CCWGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| EcoRV | GATATC | 1 cut(s) | 1339 |
| EcoT14I | CCWWGG | 4 cut(s) | 263, 489, 844, 3125 |
| EcoT22I | ATGCAT | 5 cut(s) | 330, 1999, 3004, 3618, 4279 |
| EcoT38I | GRGCYC | 1 cut(s) | 3712 |
| ErhI | CCWWGG | 4 cut(s) | 263, 489, 844, 3125 |
| Esp3I | CGTCTC | 4 cut(s) | 992, 2353, 2506, 3491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4086, 4118 |
| FaqI | GGGAC | 5 cut(s) | 825, 852, 1648, 2401, 2747 |
| FauI | CCCGC | 5 cut(s) | 416, 2737, 3770, 4016, 4185 |
| FauNDI | CATATG | 1 cut(s) | 175 |
| FbaI | TGATCA | 2 cut(s) | 496, 3297 |
| FblI | GTMKAC | 1 cut(s) | 3698 |
| FriOI | GRGCYC | 1 cut(s) | 3712 |
| FspBI | CTAG | 8 cut(s) | 303, 1209, 1473, 1521, 1539, 3126, 3378, 3849 |
| GlaI | GCGC | 1 cut(s) | 3098 |
| GsuI | CTGGAG | 4 cut(s) | 705, 1086, 3726, 3835 |
| HaeII | RGCGCY | 1 cut(s) | 3100 |
| HaeIII | GGCC | 9 cut(s) | 362, 768, 969, 1368, 2864, 2974, 3122, 3179, 3690 |
| HapII | CCGG | 5 cut(s) | 442, 1369, 3532, 3755, 4174 |
| HhaI | GCGC | 1 cut(s) | 3099 |
| Hin1I | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| Hin6I | GCGC | 1 cut(s) | 3097 |
| HinP1I | GCGC | 1 cut(s) | 3097 |
| HincII | GTYRAC | 2 cut(s) | 1011, 3595 |
| HindII | GTYRAC | 2 cut(s) | 1011, 3595 |
| HindIII | AAGCTT | 1 cut(s) | 4160 |
| HpaII | CCGG | 5 cut(s) | 442, 1369, 3532, 3755, 4174 |
| HphI | GGTGA | 8 cut(s) | 461, 656, 1910, 2449, 2500, 2932, 3559, 3706 |
| Hpy99I | CGWCG | 2 cut(s) | 732, 915 |
| HpyCH4IV | ACGT | 7 cut(s) | 78, 727, 838, 1661, 2593, 3430, 3484 |
| HpySE526I | ACGT | 7 cut(s) | 78, 727, 838, 1661, 2593, 3430, 3484 |
| Hsp92I | GRCGYC | 3 cut(s) | 727, 838, 1661 |
| HspAI | GCGC | 1 cut(s) | 3097 |
| Kpn2I | TCCGGA | 2 cut(s) | 3531, 3754 |
| KroI | GCCGGC | 1 cut(s) | 4173 |
| KroNI | GCCGGC | 1 cut(s) | 4175 |
| Ksp22I | TGATCA | 2 cut(s) | 496, 3297 |
| LguI | GCTCTTC | 1 cut(s) | 3920 |
| LmnI | GCTCC | 5 cut(s) | 829, 1045, 1067, 1217, 3707 |
| LweI | GCATC | 6 cut(s) | 159, 1040, 1237, 2006, 3625, 3937 |
| MabI | ACCWGGT | 2 cut(s) | 2884, 3597 |
| MaeI | CTAG | 8 cut(s) | 303, 1209, 1473, 1521, 1539, 3126, 3378, 3849 |
| MaeII | ACGT | 7 cut(s) | 78, 727, 838, 1661, 2593, 3430, 3484 |
| MaeIII | GTNAC | 9 cut(s) | 662, 920, 938, 1373, 2178, 2338, 2587, 2920, 4054 |
| MbiI | CCGCTC | 2 cut(s) | 1344, 4183 |
| MflI | RGATCY | 4 cut(s) | 267, 1353, 3331, 3751 |
| MhlI | GDGCHC | 6 cut(s) | 136, 200, 985, 2750, 3550, 3712 |
| MlsI | TGGCCA | 1 cut(s) | 2864 |
| MluNI | TGGCCA | 1 cut(s) | 2864 |
| MlyI | GAGTC | 9 cut(s) | 524, 1055, 1452, 1470, 2515, 3305, 3728, 4217, 4247 |
| MmeI | TCCRAC | 2 cut(s) | 544, 2490 |
| Mox20I | TGGCCA | 1 cut(s) | 2864 |
| Mph1103I | ATGCAT | 5 cut(s) | 330, 1999, 3004, 3618, 4279 |
| MroI | TCCGGA | 2 cut(s) | 3531, 3754 |
| MroNI | GCCGGC | 1 cut(s) | 4173 |
| MscI | TGGCCA | 1 cut(s) | 2864 |
| MslI | CAYNNNNRTG | 5 cut(s) | 405, 1650, 2654, 4248, 4315 |
| Msp20I | TGGCCA | 1 cut(s) | 2864 |
| MspA1I | CMGCKG | 1 cut(s) | 65 |
| MspI | CCGG | 5 cut(s) | 442, 1369, 3532, 3755, 4174 |
| MspR9I | CCNGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| Mva1269I | GAATGC | 2 cut(s) | 1893, 3387 |
| MvaI | CCWGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| MvnI | CGCG | 1 cut(s) | 423 |
| NaeI | GCCGGC | 1 cut(s) | 4175 |
| NcoI | CCATGG | 1 cut(s) | 844 |
| NdeI | CATATG | 1 cut(s) | 175 |
| NgoMIV | GCCGGC | 1 cut(s) | 4173 |
| NlaIV | GGNNCC | 8 cut(s) | 269, 868, 1186, 1355, 1544, 2763, 3123, 3137 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NmuCI | GTSAC | 5 cut(s) | 662, 920, 2178, 2920, 4054 |
| NsiI | ATGCAT | 5 cut(s) | 330, 1999, 3004, 3618, 4279 |
| NspI | RCATGY | 7 cut(s) | 332, 815, 1914, 2179, 2294, 3083, 4277 |
| NspV | TTCGAA | 1 cut(s) | 258 |
| OliI | CACNNNNGTG | 1 cut(s) | 405 |
| PaeI | GCATGC | 1 cut(s) | 4277 |
| PagI | TCATGA | 1 cut(s) | 2323 |
| PceI | AGGCCT | 1 cut(s) | 362 |
| PciI | ACATGT | 4 cut(s) | 811, 2175, 2290, 3079 |
| PciSI | GCTCTTC | 1 cut(s) | 3920 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1954, 2815 |
| PctI | GAATGC | 2 cut(s) | 1893, 3387 |
| PdiI | GCCGGC | 1 cut(s) | 4175 |
| PfeI | GAWTC | 2 cut(s) | 3191, 3857 |
| PflFI | GACNNNGTC | 1 cut(s) | 1479 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1050, 2584, 3686 |
| PfoI | TCCNGGA | 3 cut(s) | 832, 1093, 3812 |
| PleI | GAGTC | 9 cut(s) | 524, 1055, 1451, 1470, 2515, 3305, 3728, 4217, 4247 |
| PmaCI | CACGTG | 1 cut(s) | 2594 |
| PmlI | CACGTG | 1 cut(s) | 2594 |
| PpsI | GAGTC | 9 cut(s) | 524, 1055, 1451, 1470, 2515, 3305, 3728, 4217, 4247 |
| Ppu21I | YACGTR | 1 cut(s) | 2594 |
| PpuMI | RGGWCCY | 1 cut(s) | 866 |
| PscI | ACATGT | 4 cut(s) | 811, 2175, 2290, 3079 |
| PshBI | ATTAAT | 2 cut(s) | 2052, 3239 |
| PsiI | TTATAA | 1 cut(s) | 2769 |
| Psp124BI | GAGCTC | 1 cut(s) | 3712 |
| Psp1406I | AACGTT | 1 cut(s) | 78 |
| Psp5II | RGGWCCY | 1 cut(s) | 866 |
| Psp6I | CCWGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| PspCI | CACGTG | 1 cut(s) | 2594 |
| PspGI | CCWGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| PspN4I | GGNNCC | 8 cut(s) | 269, 868, 1186, 1355, 1544, 2763, 3123, 3137 |
| PspPI | GGNCC | 7 cut(s) | 379, 566, 866, 2761, 3121, 3338, 3797 |
| PspPPI | RGGWCCY | 1 cut(s) | 866 |
| PstI | CTGCAG | 2 cut(s) | 3472, 3889 |
| PsuI | RGATCY | 4 cut(s) | 267, 1353, 3331, 3751 |
| PsyI | GACNNNGTC | 1 cut(s) | 1479 |
| RsaI | GTAC | 4 cut(s) | 1020, 1121, 3433, 3782 |
| RsaNI | GTAC | 4 cut(s) | 1019, 1120, 3432, 3781 |
| RseI | CAYNNNNRTG | 5 cut(s) | 405, 1650, 2654, 4248, 4315 |
| SacI | GAGCTC | 1 cut(s) | 3712 |
| SapI | GCTCTTC | 1 cut(s) | 3920 |
| Sau96I | GGNCC | 7 cut(s) | 379, 566, 866, 2761, 3121, 3338, 3797 |
| SchI | GAGTC | 9 cut(s) | 524, 1055, 1452, 1470, 2515, 3305, 3728, 4217, 4247 |
| ScrFI | CCNGG | 9 cut(s) | 364, 834, 1095, 2886, 3167, 3599, 3705, 3814, 4064 |
| SduI | GDGCHC | 6 cut(s) | 136, 200, 985, 2750, 3550, 3712 |
| SexAI | ACCWGGT | 2 cut(s) | 2884, 3597 |
| SfaNI | GCATC | 6 cut(s) | 159, 1040, 1237, 2006, 3625, 3937 |
| SfcI | CTRYAG | 5 cut(s) | 2559, 2674, 3048, 3468, 3885 |
| SfuI | TTCGAA | 1 cut(s) | 258 |
| SinI | GGWCC | 6 cut(s) | 379, 566, 866, 2761, 3338, 3797 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 405, 1650, 2654, 4248, 4315 |
| SmlI | CTYRAG | 1 cut(s) | 1396 |
| SmoI | CTYRAG | 1 cut(s) | 1396 |
| SpeI | ACTAGT | 1 cut(s) | 302 |
| SphI | GCATGC | 1 cut(s) | 4277 |
| SseBI | AGGCCT | 1 cut(s) | 362 |
| SspI | AATATT | 1 cut(s) | 3967 |
| SspMI | CTAG | 8 cut(s) | 303, 1209, 1473, 1521, 1539, 3126, 3378, 3849 |
| SstI | GAGCTC | 1 cut(s) | 3712 |
| StuI | AGGCCT | 1 cut(s) | 362 |
| StyD4I | CCNGG | 9 cut(s) | 362, 832, 1093, 2884, 3165, 3597, 3703, 3812, 4062 |
| StyI | CCWWGG | 4 cut(s) | 263, 489, 844, 3125 |
| TaiI | ACGT | 7 cut(s) | 81, 730, 841, 1664, 2596, 3433, 3487 |
| TaqI | TCGA | 8 cut(s) | 258, 2056, 2110, 2519, 2543, 2834, 4023, 4029 |
| TaqII | GACCGA | 2 cut(s) | 396, 1469 |
| TatI | WGTACW | 1 cut(s) | 1119 |
| TauI | GCSGC | 1 cut(s) | 3097 |
| TfiI | GAWTC | 2 cut(s) | 3191, 3857 |
| TseFI | GTSAC | 5 cut(s) | 662, 920, 2178, 2920, 4054 |
| Tsp45I | GTSAC | 5 cut(s) | 662, 920, 2178, 2920, 4054 |
| TspGWI | ACGGA | 3 cut(s) | 1316, 1850, 2156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1479 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1050, 2584, 3686 |
| VneI | GTGCAC | 1 cut(s) | 3546 |
| VpaK11BI | GGWCC | 6 cut(s) | 379, 566, 866, 2761, 3338, 3797 |
| VspI | ATTAAT | 2 cut(s) | 2052, 3239 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 831 |
| XapI | RAATTY | 6 cut(s) | 1612, 1781, 1805, 2419, 2690, 2723 |
| XbaI | TCTAGA | 1 cut(s) | 1472 |
| XceI | RCATGY | 7 cut(s) | 332, 815, 1914, 2179, 2294, 3083, 4277 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 788, 2013, 2581 |
| XmaJI | CCTAGG | 1 cut(s) | 3125 |
| XmiI | GTMKAC | 1 cut(s) | 3698 |
| XspI | CTAG | 8 cut(s) | 303, 1209, 1473, 1521, 1539, 3126, 3378, 3849 |
| ZraI | GACGTC | 3 cut(s) | 728, 839, 1662 |
| Zsp2I | ATGCAT | 5 cut(s) | 330, 1999, 3004, 3618, 4279 |