Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000889

Physical Location & Seq

Genomic Coordinates Forward (+)

28710166 .. 28711884

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33302.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCACTCCAGTTTTCTATGAAAGACTTGCACTACTTTTTGGGAATAGAAGTGGTACCTCATGGCACTCAAGTTCATCTGACTCAAAGCAAGTATGCTGTTGACTTACTTCGCAAGACCAAGTTTCAAGATGTTAAGCCACTTTCCTCTCCTGCTGCTCATGGAAAACGTCTAAGTGTTAATGATGGTGATGTTCTTGTTGATCCGTCTGAGTACCGCAGTGTAGTTGGAGCTCTTCAATACTTGACCGTAACTCGTCATGATCTTGCATTTGCTGTTAACCAAGTCTACCAATATATGCATCGTCCTACAACTTCTCATTGGATGGCAGTCAAGAGAATTCTGCGTTTTGTGAAGTCTACTTATGATCATGGTTTGGTCTATTCTCCCGGTAATTTACAATTGCAAGCATTCTCTGATGCGGATTGTGCCGGTGAACCAGATGAGCGTCATTATACTGGCGGTCATTGTGAAGAACCCAGCAGCAGGACCAACCGTTTCTGTTCACAATTGTTTGAAGAGAAGTCAAGAGAAGCGCGCGAACCAAACAAGATCAAGACATGCACACTTCCTCAAGGTGTTGGCATGCTCGCACCAGACGAGGCAGAATATAGGCAATTAGCTTTGACAGCAGCAGAAATCTCTTGGCTCCGCTCTTTGTTTCGTGACTTACACGTTGCCTTGACTCCTCCTCGCTTATGGTGTGACAATGTAAGTGCTGTTTCTTTAGCCTCAAATCCGGTGTTCCATTCCCGTACGAAGCATGTTGAAGTAGACTATCACTACATTCGGGATAAAGTTGTTAGAAAGGAACTTTCAGTCGGCTTTGTGTGTAGTGAAGATCAGCTAGCTGATATCTTCACAAAAGGACTGCATCCTAAACGATTCAAAGTACTGGCATCCAAGCTTCCTGTGCGATCTCGCCCTGCAAGCTTGCGGGGGTGTAATAGACATAACTTATCCTCTCTTGCTTCTTCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

328

Amino Acids

36.99

Weight (kDa)

9.08

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00820
fragaria_vesca	FvH4_2g11011 FvH4_2g23061 FvH4_3g33302 FvH4_4g01631 FvH4_5g39270 FvH4_6g33903
malus_domestica	MD00G1024600.v1.1 MD00G1084700.v1.1 MD02G1303700.v1.1 MD03G1056000.v1.1 MD04G1231400.v1.1 MD05G1050400.v1.1 MD09G1100700.v1.1 MD09G1214100.v1.1 MD11G1146000.v1.1 MD11G1197500.v1.1 MD12G1020900.v1.1 MD12G1052500.v1.1 MD12G1175300.v1.1 MD12G1185900.v1.1 MD13G1050200.v1.1 MD13G1157100.v1.1 MD14G1109000.v1.1 MD14G1189500.v1.1 MD14G1225200.v1.1 MD16G1247000.v1.1 MD16G1278000.v1.1 MD17G1115400.v1.1 MD17G1248200.v1.1
pyrus_communis	pycom02g18580 pycom03g02970 pycom03g07840 pycom05g12390 pycom05g14310 pycom07g14010 pycom07g17390 pycom08g03700 pycom08g03730 pycom12g14660 pycom14g19040 pycom15g04630 pycom15g35310 pycom17g24840 pycom520g01050
rosa_chinensis	RchiOBHm_Chr2g0093581 RchiOBHm_Chr2g0139021 RchiOBHm_Chr2g0153961 RchiOBHm_Chr3g0454851 RchiOBHm_Chr3g0479941 RchiOBHm_Chr5g0074721 RchiOBHm_Chr7g0182831 RchiOBHm_Chr7g0210861 RchiOBHm_Chr7g0238261
rosa_roxburghii	Rroxscaffold_1G00010990 Rroxscaffold_1G00042070 Rroxscaffold_2G00082160 Rroxscaffold_3G00266700
rosa_wichuraiana	Rw1G002370 Rw2G026000 Rw3G024450 Rw4G009390 Rw5G000900 Rw5G015970 Rw6G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	654
AccI	GTMKAC	3 cut(s)	288, 359, 774
AccII	CGCG	2 cut(s)	538, 540
AciI	CCGC	5 cut(s)	217, 422, 462, 652, 937
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	4 cut(s)	57, 215, 757, 894
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	5 cut(s)	128, 239, 518, 770, 889
AluBI	AGCT	6 cut(s)	233, 623, 847, 851, 907, 933
AluI	AGCT	6 cut(s)	233, 623, 847, 851, 907, 933
Alw21I	GWGCWC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	197
ApeKI	GCWGC	3 cut(s)	155, 483, 632
ApoI	RAATTY	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	538, 540
AspS9I	GGNCC	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	200, 446
AsuNHI	GCTAGC	1 cut(s)	847
AvaII	GGWCC	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	142, 495, 644
BccI	CCATC	2 cut(s)	179, 319
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	848
BisI	GCNGC	3 cut(s)	156, 484, 633
BlsI	GCNGC	3 cut(s)	157, 485, 634
BmcAI	AGTACT	1 cut(s)	894
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	2 cut(s)	57, 650
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	310, 409, 883, 908
BmtI	GCTAGC	1 cut(s)	851
BpuEI	CTTGAG	2 cut(s)	54, 558
BpuMI	CCSGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	10, 463, 900
BseGI	GGATG	3 cut(s)	330, 874, 899
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	10, 463, 900
BsePI	GCGCGC	1 cut(s)	536
BseRI	GAGGAG	2 cut(s)	678, 681
BseXI	GCAGC	3 cut(s)	142, 495, 644
BseYI	CCCAGC	1 cut(s)	479
Bsh1236I	CGCG	2 cut(s)	538, 540
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	390, 432, 740
BsiWI	CGTACG	1 cut(s)	755
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
BspACI	CCGC	5 cut(s)	217, 422, 462, 652, 937
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	538, 540
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	57, 650
BspOI	GCTAGC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	3 cut(s)	10, 463, 900
BssAI	RCCGGY	1 cut(s)	431
BssHII	GCGCGC	1 cut(s)	536
BssMI	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
Bst4CI	ACNGT	2 cut(s)	250, 497
Bst6I	CTCTTC	2 cut(s)	240, 513
BstC8I	GCNNGC	7 cut(s)	408, 538, 587, 591, 849, 931, 935
BstDEI	CTNAG	2 cut(s)	173, 210
BstF5I	GGATG	3 cut(s)	330, 874, 899
BstFNI	CGCG	2 cut(s)	538, 540
BstHHI	GCGC	2 cut(s)	538, 540
BstKTI	GATC	6 cut(s)	205, 265, 370, 555, 844, 920
BstMBI	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 629, 913, 930
BstNSI	RCATGY	3 cut(s)	564, 589, 767
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	2 cut(s)	538, 540
BstV1I	GCAGC	3 cut(s)	142, 495, 644
BtsCI	GGATG	3 cut(s)	330, 874, 899
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	7 cut(s)	408, 538, 587, 591, 849, 931, 935
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	2 cut(s)	538, 540
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	4 cut(s)	56, 214, 756, 893
CviAII	CATG	7 cut(s)	62, 161, 260, 371, 561, 586, 764
CviQI	GTAC	4 cut(s)	56, 214, 756, 893
DdeI	CTNAG	2 cut(s)	173, 210
DpnI	GATC	6 cut(s)	204, 264, 369, 554, 843, 919
DpnII	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
Eam1104I	CTCTTC	2 cut(s)	240, 513
EarI	CTCTTC	2 cut(s)	240, 513
Ecl136II	GAGCTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	235
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	339
EcoRV	GATATC	1 cut(s)	856
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	235
FaeI	CATG	7 cut(s)	65, 164, 263, 374, 564, 589, 767
FatI	CATG	7 cut(s)	61, 160, 259, 370, 560, 585, 763
FauI	CCCGC	1 cut(s)	930
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	3 cut(s)	288, 359, 774
Fnu4HI	GCNGC	3 cut(s)	156, 484, 633
FokI	GGATG	3 cut(s)	337, 861, 886
FriOI	GRGCYC	1 cut(s)	235
Fsp4HI	GCNGC	3 cut(s)	156, 484, 633
FspBI	CTAG	1 cut(s)	848
GlaI	GCGC	2 cut(s)	537, 539
GluI	GCNGC	3 cut(s)	156, 484, 633
GsaI	CCCAGC	1 cut(s)	483
HapII	CCGG	3 cut(s)	390, 432, 740
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	538, 540
Hin1II	CATG	7 cut(s)	65, 164, 263, 374, 564, 589, 767
Hin6I	GCGC	2 cut(s)	536, 538
HinP1I	GCGC	2 cut(s)	536, 538
HincII	GTYRAC	2 cut(s)	103, 280
HindII	GTYRAC	2 cut(s)	103, 280
HindIII	AAGCTT	2 cut(s)	905, 931
HinfI	GANTC	3 cut(s)	82, 685, 885
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	390, 432, 740
HphI	GGTGA	2 cut(s)	200, 446
Hpy166II	GTNNAC	7 cut(s)	103, 280, 289, 360, 437, 506, 775
Hpy188I	TCNGA	3 cut(s)	81, 211, 418
Hpy188III	TCNNGA	7 cut(s)	128, 260, 334, 528, 556, 665, 791
Hpy8I	GTNNAC	7 cut(s)	103, 280, 289, 360, 437, 506, 775
HpyCH4III	ACNGT	2 cut(s)	250, 497
HpyCH4IV	ACGT	2 cut(s)	169, 675
HpyCH4V	TGCA	7 cut(s)	31, 269, 301, 406, 564, 874, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 629, 913, 930
HpyF3I	CTNAG	2 cut(s)	173, 210
HpySE526I	ACGT	2 cut(s)	169, 675
Hsp92II	CATG	7 cut(s)	65, 164, 263, 374, 564, 589, 767
HspAI	GCGC	2 cut(s)	536, 538
KpnI	GGTACC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	2 cut(s)	230, 654
Lsp1109I	GCAGC	3 cut(s)	142, 495, 644
LweI	GCATC	4 cut(s)	310, 409, 883, 908
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	2 cut(s)	169, 675
MaeIII	GTNAC	3 cut(s)	250, 665, 704
MalI	GATC	6 cut(s)	204, 264, 369, 554, 843, 919
MbiI	CCGCTC	1 cut(s)	654
MboI	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
MboII	GAAGA	6 cut(s)	227, 485, 530, 850, 851, 966
MfeI	CAATTG	2 cut(s)	401, 509
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	5 cut(s)	339, 394, 401, 509, 617
MlyI	GAGTC	2 cut(s)	76, 679
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	69, 157, 582, 595, 699, 702, 742, 973
Mph1103I	ATGCAT	1 cut(s)	303
MseI	TTAA	3 cut(s)	135, 180, 279
MspI	CCGG	3 cut(s)	390, 432, 740
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	2 cut(s)	401, 509
Mva1269I	GAATGC	1 cut(s)	410
MvnI	CGCG	2 cut(s)	538, 540
MwoI	GCNNNNNNNGC	4 cut(s)	428, 629, 913, 930
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
NheI	GCTAGC	1 cut(s)	847
NlaIII	CATG	7 cut(s)	65, 164, 263, 374, 564, 589, 767
NlaIV	GGNNCC	2 cut(s)	57, 650
NmuCI	GTSAC	2 cut(s)	665, 704
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	3 cut(s)	564, 589, 767
PaeI	GCATGC	1 cut(s)	589
PagI	TCATGA	1 cut(s)	259
PauI	GCGCGC	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	885
Pfl23II	CGTACG	1 cut(s)	755
PkrI	GCNGC	3 cut(s)	157, 485, 634
PleI	GAGTC	2 cut(s)	76, 679
PpsI	GAGTC	2 cut(s)	76, 679
Psp124BI	GAGCTC	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	479
PspLI	CGTACG	1 cut(s)	755
PspN4I	GGNNCC	2 cut(s)	57, 650
PspPI	GGNCC	1 cut(s)	489
PteI	GCGCGC	1 cut(s)	536
RsaI	GTAC	4 cut(s)	57, 215, 757, 894
RsaNI	GTAC	4 cut(s)	56, 214, 756, 893
SacI	GAGCTC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	135, 180, 279
SatI	GCNGC	3 cut(s)	156, 484, 633
Sau3AI	GATC	6 cut(s)	202, 262, 367, 552, 841, 917
Sau96I	GGNCC	1 cut(s)	489
ScaI	AGTACT	1 cut(s)	894
SchI	GAGTC	2 cut(s)	76, 679
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	4 cut(s)	310, 409, 883, 908
SinI	GGWCC	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	69, 573
SmoI	CTYRAG	2 cut(s)	69, 573
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	5 cut(s)	339, 394, 401, 509, 617
SsiI	CCGC	5 cut(s)	217, 422, 462, 652, 937
SspMI	CTAG	1 cut(s)	848
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	250, 497
TaiI	ACGT	2 cut(s)	172, 678
TasI	AATT	5 cut(s)	339, 394, 401, 509, 617
TatI	WGTACW	1 cut(s)	892
TfiI	GAWTC	1 cut(s)	885
Tru1I	TTAA	3 cut(s)	135, 180, 279
Tru9I	TTAA	3 cut(s)	135, 180, 279
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	665, 704
TseI	GCWGC	3 cut(s)	155, 483, 632
Tsp45I	GTSAC	2 cut(s)	665, 704
TspDTI	ATGAA	2 cut(s)	35, 65
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	3 cut(s)	564, 589, 767
XmiI	GTMKAC	3 cut(s)	288, 359, 774
XspI	CTAG	1 cut(s)	848
ZrmI	AGTACT	1 cut(s)	894
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.