Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Reverse (-)

251403 .. 251897

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGCGAGCACCAATCTCTAGTAACGTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTAGTTATTATCAGAGCAATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGTTTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAGCAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCGGACTTTGTGGTGAAGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAGTGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCTTCTATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAACAGCTTCAGGTATAAGATCCCCTTCACTATTCCCTTAATATTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

7.76

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	93 - 151	7.1e-13	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccII	CGCG	1 cut(s)	373
AciI	CCGC	2 cut(s)	84, 373
AclWI	GGATC	2 cut(s)	442, 457
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	2 cut(s)	213, 436
AfaI	GTAC	2 cut(s)	95, 334
AfiI	CCNNNNNNNGG	2 cut(s)	263, 431
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	4 cut(s)	75, 197, 224, 450
AluI	AGCT	4 cut(s)	75, 197, 224, 450
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	205, 350
AlwI	GGATC	2 cut(s)	442, 457
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BalI	TGGCCA	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	141, 391
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	261, 340
BceAI	ACGGC	4 cut(s)	97, 204, 220, 276
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	205, 350
BfaI	CTAG	2 cut(s)	54, 336
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	141, 391
Bpu10I	CCTNAGC	2 cut(s)	129, 225
BsaJI	CCNNGG	4 cut(s)	309, 351, 425, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 431
Bse1I	ACTGG	2 cut(s)	175, 424
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	4 cut(s)	309, 351, 425, 440
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	263, 431
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	195, 239, 351
BseNI	ACTGG	2 cut(s)	175, 424
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	373
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	263, 431
BsmAI	GTCTC	2 cut(s)	205, 350
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	434, 462
Bsp19I	CCATGG	3 cut(s)	309, 351, 425
BspACI	CCGC	2 cut(s)	84, 373
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	3 cut(s)	196, 238, 352
BspFNI	CGCG	1 cut(s)	373
BspPI	GGATC	2 cut(s)	442, 457
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	175, 424
BssECI	CCNNGG	4 cut(s)	309, 351, 425, 440
BssMI	GATC	2 cut(s)	434, 462
BssT1I	CCWWGG	4 cut(s)	309, 351, 425, 440
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	129, 204, 225, 360
BstDSI	CCRYGG	3 cut(s)	309, 351, 425
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	437, 465
BstMAI	GTCTC	2 cut(s)	205, 350
BstMBI	GATC	2 cut(s)	434, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 120, 311
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	141, 391
BstX2I	RGATCY	2 cut(s)	434, 462
BstYI	RGATCY	2 cut(s)	434, 462
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	3 cut(s)	309, 351, 425
BtsCI	GGATG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	94, 333
CviAII	CATG	3 cut(s)	310, 352, 426
CviQI	GTAC	2 cut(s)	94, 333
DdeI	CTNAG	4 cut(s)	129, 204, 225, 360
DpnI	GATC	2 cut(s)	436, 464
DpnII	GATC	2 cut(s)	434, 462
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	4 cut(s)	309, 351, 425, 440
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	213, 436
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	4 cut(s)	309, 351, 425, 440
ErhI	CCWWGG	4 cut(s)	309, 351, 425, 440
FaeI	CATG	3 cut(s)	313, 355, 429
FaiI	YATR	7 cut(s)	311, 317, 353, 405, 409, 427, 459
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	3 cut(s)	309, 351, 425
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	54, 336
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	313, 355, 429
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	325, 365
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	65, 111, 205, 274, 494
Hpy188III	TCNNGA	2 cut(s)	322, 413
Hpy99I	CGWCG	2 cut(s)	65, 143
HpyAV	CCTTC	3 cut(s)	148, 280, 478
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 120, 311
HpyF3I	CTNAG	4 cut(s)	129, 204, 225, 360
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	313, 355, 429
Kzo9I	GATC	2 cut(s)	434, 462
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	54, 336
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	436, 464
MboI	GATC	2 cut(s)	434, 462
MboII	GAAGA	6 cut(s)	146, 163, 305, 355, 360, 391
MflI	RGATCY	2 cut(s)	434, 462
MhlI	GDGCHC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	319, 359
MmeI	TCCRAC	2 cut(s)	43, 252
MnlI	CCTC	7 cut(s)	59, 113, 159, 199, 235, 295, 355
Mox20I	TGGCCA	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	2 cut(s)	213, 482
Msp20I	TGGCCA	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	81, 120, 311
NcoI	CCATGG	3 cut(s)	309, 351, 425
NdeII	GATC	2 cut(s)	434, 462
NlaIII	CATG	3 cut(s)	313, 355, 429
PdmI	GAANNNNTTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	319, 359
PpsI	GAGTC	2 cut(s)	319, 359
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	434, 462
RsaI	GTAC	2 cut(s)	95, 334
RsaNI	GTAC	2 cut(s)	94, 333
SaqAI	TTAA	2 cut(s)	213, 482
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	434, 462
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	319, 359
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	7 cut(s)	63, 77, 199, 226, 246, 452, 458
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	84, 373
SspI	AATATT	1 cut(s)	486
SspMI	CTAG	2 cut(s)	54, 336
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	4 cut(s)	309, 351, 425, 440
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	63
TasI	AATT	1 cut(s)	182
TatI	WGTACW	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	213, 482
Tru9I	TTAA	2 cut(s)	213, 482
TseI	GCWGC	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	422
VspI	ATTAAT	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	54, 336
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.