Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000804

Physical Location & Seq

Genomic Coordinates Forward (+)

2725953 .. 2729970

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGCCTCCCAATTCTCACCGTCACACTCGCTCTCGCTCTCACTCTCACTCTCACGCGCCTCCGCCGCCGCAGCTCGTCTCCATCGACCCCAAAATCTGGCGAGCCTGCGCCGGCAACTCCGTCACCATCCCCACTCTCCATTCTAGGGTTTACTACTTCCCCCAAGGCCACCTCGAACACTCCACCTCCTCCTCCTCCGCTCCGGTTCTTCTCTCCCCTCTCGTCCTCTCCAAGCCTCTCATTCTCTGCCGCATCGCCGGCGTCCAGTTCCTCGCCGATCCCACCACCGACGAGGTCCTCGCCAAGCTCCTTCTCCATCCTGTTCACTCCGGACTCTCCCCTCACCACCGCGAACTCAGCGCCGCCGCCGCGGTGGAGGAGGGAGAGGAGGACGACGACGGCGGCGATAGGGTGGTGTCGTTCGCTAAGATCTTGACTCCTTCCGATGCTAACAATGGCGGTGGTTTCTCTGTCCCGCGGTTTTGTGCTGACTCGATTTTCCCGCCGCTTAACTACCAGGCTGAGCCGCCGGTCCAGACGCTCTCCGTCACCGACCTGCACGGCGGCGTTTGGGACTTCCGCCACATCTACCGCGGGACTCCCCGGAGGCACTTGCTCACCACCGGCTGGAGCAAGTTCGTCAATCACAAGATGCTCGTCGCCGGCGACTCTGTGGTGTTTATGAGGAGCTCCAGAGGTGGGGAGATGTACGTCGGGGTAAGGCGGACCGTGAGGGCGAGTTCCGGCGGCGATTGCGGCAGGTGGAGCTCTCACATTGGGCTGAAGTCGGAGGAGGAAGGTTCTGGAGGTGACGGGTTTAAGACGAGGCTTTCGGCCGAGGCTGTGGCGGAGGCTGCGGAGATGGCGGCGCAGGACATGCCGTTTGAGGTGGTGTATTATCCGAAAGCTGGGTGGGCCGACTTTGTGGTGAAGGCAGAGGTGGTGGAGAAGGCATTGAAGGTGTTTTGGACGGCTGGGATGAGAGTCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGGAGAATGGGCCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAACCCATGGCAAGTTGACTTTGTTGCATCAACACCTTCTCTTCATACTGTACCTTCGCTTCATACTGTATTTCCCCCCACAAAGAGACTCCGAGCTCCACTGAATCCTGGGCTGCTGAGAAATGGAGAGGAAGAATTCATGATACCTATAACCGGAGCAGCTAATTCAACAATGGGGCAATTCAATGCTTCCTTGTTGAACTATAACATTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATTCTGTGTATCCAATGTATCTCATTTGTTAAATGAAAATTCTCCTCGGATGTGCACCTATAATTCCTTTGGCAACAACAACATGGTGCCAAGGTTGAAGAGGGTCTCAACTGAGTTGAACATTGGAAGTCCACAGTCTGATCAATTATCACCAGATAGCCAGAGTAGTCCACATTCCTTTGGCATGGAACTTGATGGGAACCGAAACTGCAACTCAACAAAGGTCGGAAGAAGTTCTTTTCAACTCTTTGGTCAGACCATTCAACTTGAAGGTATTGATGCTGTTGGTTGCACTGGGGACGGTGGCAATATAGGGTACAATGAAACTGAACTTCTGAACAACCAACTGGATCTTTCTTATACCAAACTGCTTGAAAGGATTGATGCTCTCAAGTCTGGCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

601

Amino Acids

65.65

Weight (kDa)

6.4

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	141 - 243	1e-22	B3 DNA binding domain
BRWD_AD	PF25313	289 - 390	8.3e-07	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	308 - 391	2.6e-27	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77850 AT1G77850 ATMG00940
fragaria_vesca	FvH4_5g38640 FvH4_5g38681 FvH4_5g38690 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_5g38770 FvH4_6g33200
malus_domestica	MD00G1103900.v1.1 MD15G1359400.v1.1
prunus_persica	Prupe.1G507000_v2.0.a1
pyrus_communis	pycom08g14870 pycom15g32180
rosa_chinensis	RchiOBHm_Chr7g0240691
rosa_laevigata	RLG00000000626 RLG00000000646 RLG00000000656 RLG00000000659 RLG00000000668 RLG00000018665
rosa_multiflora	Rmu_co8133848.1_g000001 Rmu_co8172656.1_g000002 Rmu_sc0001483.1_g000002 Rmu_sc0001921.1_g000034 Rmu_sc0002517.1_g000004 Rmu_sc0004799.1_g000003 Rmu_sc0004799.1_g000004 Rmu_sc0011947.1_g000001 Rmu_sc0023480.1_g000003 Rmu_sc0030169.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121890 Rroxscaffold_3G00219660 Rroxscaffold_3G00219860 Rroxscaffold_3G00219880 Rroxscaffold_3G00236300
rosa_rugosa	Rorug02G0236900 Rorug02G0237000 Rorug07G0337600 Rorug07G0338300
rosa_samantha	Rh2AG295100 Rh7AG491700 Rh7AG492100 Rh7AG492900 Rh7BG464200 Rh7BG464600 Rh7BG464900 Rh7CG508200 Rh7CG508500 Rh7CG509100 Rh7CG509700 Rh7CG510000 Rh7CG511300 Rh7DG475700 Rh7DG476000 Rh7DG476700 Rh7DG477300 Rh7DG477600 Rh7DG478100
rosa_wichuraiana	Rw0G013480 Rw7G041210 Rw7G041230 Rw7G041320 Rw7G041490 Rw7G041510 Rw7G041550 Rw7G041690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	750
Acc36I	ACCTGC	2 cut(s)	564, 750
AccB1I	GGYRCC	1 cut(s)	1480
AccB7I	CCANNNNNTGG	2 cut(s)	96, 627
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	5 cut(s)	56, 351, 371, 478, 594
AccIII	TCCGGA	2 cut(s)	329, 1060
AclWI	GGATC	4 cut(s)	272, 1077, 1090, 1752
AcoI	YGGCCR	2 cut(s)	834, 993
AcsI	RAATTY	2 cut(s)	1283, 1432
AcuI	CTGAAG	3 cut(s)	803, 1085, 1143
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	3 cut(s)	710, 1200, 1712
AfiI	CCNNNNNNNGG	8 cut(s)	96, 145, 627, 699, 908, 1067, 1079, 1301
AjnI	CCWGG	4 cut(s)	516, 1016, 1255, 1382
AluBI	AGCT	8 cut(s)	73, 307, 690, 768, 908, 1244, 1310, 1800
AluI	AGCT	8 cut(s)	73, 307, 690, 768, 908, 1244, 1310, 1800
Alw21I	GWGCWC	4 cut(s)	692, 770, 1246, 1451
Alw26I	GTCTC	4 cut(s)	82, 995, 1228, 1504
Alw44I	GTGCAC	1 cut(s)	1447
AlwI	GGATC	4 cut(s)	272, 1077, 1090, 1752
Aor13HI	TCCGGA	2 cut(s)	329, 1060
AoxI	GGCC	5 cut(s)	166, 834, 915, 993, 1070
ApaLI	GTGCAC	1 cut(s)	1447
ApeKI	GCWGC	4 cut(s)	70, 854, 1261, 1307
ApoI	RAATTY	2 cut(s)	1283, 1432
ArsI	GACNNNNNNTTYG	4 cut(s)	814, 846, 866, 898
Asp700I	GAANNNNTTC	1 cut(s)	1627
AspLEI	GCGC	4 cut(s)	58, 110, 362, 871
AspS9I	GGNCC	5 cut(s)	295, 532, 726, 915, 1070
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	9 cut(s)	8, 115, 335, 541, 610, 821, 940, 1159, 1536
AvaII	GGWCC	3 cut(s)	295, 532, 726
BaeGI	GKGCMC	2 cut(s)	1040, 1451
BalI	TGGCCA	1 cut(s)	995
BamHI	GGATCC	1 cut(s)	1082
BanI	GGYRCC	1 cut(s)	1480
BanII	GRGCYC	3 cut(s)	692, 770, 1246
BarI	GAAGNNNNNNTAC	2 cut(s)	1191, 1223
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	4 cut(s)	692, 770, 1246, 1451
BbvI	GCAGC	4 cut(s)	82, 841, 1248, 1319
BccI	CCATC	6 cut(s)	89, 134, 324, 856, 985, 1583
BceAI	ACGGC	4 cut(s)	415, 577, 865, 987
BciT130I	CCWGG	4 cut(s)	518, 1018, 1257, 1384
BciVI	GTATCC	1 cut(s)	1414
BclI	TGATCA	1 cut(s)	1534
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	4 cut(s)	82, 995, 1228, 1504
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	1130
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	564, 750
BfuI	GTATCC	1 cut(s)	1414
BglII	AGATCT	2 cut(s)	429, 1390
BlpI	GCTNAGC	1 cut(s)	522
Bme1390I	CCNGG	5 cut(s)	518, 604, 1018, 1257, 1384
Bme18I	GGWCC	3 cut(s)	295, 532, 726
BmgT120I	GGNCC	5 cut(s)	295, 532, 726, 915, 1070
BmiI	GGNNCC	4 cut(s)	1084, 1381, 1482, 1595
BmrFI	CCNGG	5 cut(s)	518, 604, 1018, 1257, 1384
BmrI	ACTGGG	1 cut(s)	1698
BmsI	GCATC	6 cut(s)	261, 436, 642, 1184, 1663, 1768
BmuI	ACTGGG	1 cut(s)	1698
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	4 cut(s)	649, 676, 825, 1000
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	1769
BpuMI	CCSGG	1 cut(s)	604
BsaHI	GRCGYC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	1504
BsaWI	WCCGGW	4 cut(s)	202, 329, 1060, 1301
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	8 cut(s)	96, 145, 627, 699, 908, 1067, 1079, 1301
Bse118I	RCCGGY	5 cut(s)	110, 257, 529, 623, 662
Bse1I	ACTGG	3 cut(s)	265, 1693, 1746
BseAI	TCCGGA	2 cut(s)	329, 1060
BseBI	CCWGG	4 cut(s)	518, 1018, 1257, 1384
BseGI	GGATG	6 cut(s)	126, 316, 984, 1026, 1120, 1449
BseLI	CCNNNNNNNGG	8 cut(s)	96, 145, 627, 699, 908, 1067, 1079, 1301
BseMII	CTCAG	4 cut(s)	370, 513, 1256, 1497
BseNI	ACTGG	3 cut(s)	265, 1693, 1746
BseRI	GAGGAG	9 cut(s)	178, 181, 184, 392, 401, 700, 806, 1003, 1428
BseSI	GKGCMC	2 cut(s)	1040, 1451
BseX3I	CGGCCG	1 cut(s)	834
BseXI	GCAGC	4 cut(s)	82, 841, 1248, 1319
BseYI	CCCAGC	2 cut(s)	908, 974
BsgI	GTGCAG	1 cut(s)	542
Bsh1236I	CGCG	5 cut(s)	56, 351, 371, 478, 594
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	5 cut(s)	168, 836, 917, 995, 1072
BshNI	GGYRCC	1 cut(s)	1480
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	4 cut(s)	692, 770, 1246, 1451
BslFI	GGGAC	4 cut(s)	458, 587, 610, 1706
BslI	CCNNNNNNNGG	8 cut(s)	96, 145, 627, 699, 908, 1067, 1079, 1301
BsmAI	GTCTC	4 cut(s)	82, 995, 1228, 1504
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	4 cut(s)	458, 587, 610, 1706
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	5 cut(s)	168, 836, 917, 995, 1072
Bso31I	GGTCTC	1 cut(s)	1504
Bsp1286I	GDGCHC	5 cut(s)	692, 770, 1040, 1246, 1451
Bsp13I	TCCGGA	2 cut(s)	329, 1060
Bsp143I	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	3 cut(s)	996, 1088, 1154
BspANI	GGCC	5 cut(s)	168, 836, 917, 995, 1072
BspCNI	CTCAG	4 cut(s)	369, 514, 1257, 1498
BspEI	TCCGGA	2 cut(s)	329, 1060
BspFNI	CGCG	5 cut(s)	56, 351, 371, 478, 594
BspHI	TCATGA	1 cut(s)	1287
BspLI	GGNNCC	4 cut(s)	1084, 1381, 1482, 1595
BspMAI	CTGCAG	1 cut(s)	1134
BspMI	ACCTGC	2 cut(s)	564, 750
BspPI	GGATC	4 cut(s)	272, 1077, 1090, 1752
BspT107I	GGYRCC	1 cut(s)	1480
BspTNI	GGTCTC	1 cut(s)	1504
BsrBI	CCGCTC	1 cut(s)	200
BsrFI	RCCGGY	5 cut(s)	110, 257, 529, 623, 662
BsrI	ACTGG	3 cut(s)	265, 1693, 1746
BssAI	RCCGGY	5 cut(s)	110, 257, 529, 623, 662
BssMI	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	6 cut(s)	163, 996, 1073, 1088, 1154, 1484
Bst2UI	CCWGG	4 cut(s)	518, 1018, 1257, 1384
Bst4CI	ACNGT	6 cut(s)	20, 730, 1198, 1216, 1530, 1697
Bst6I	CTCTTC	2 cut(s)	1194, 1487
BstACI	GRCGYC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstC8I	GCNNGC	7 cut(s)	102, 106, 112, 259, 664, 1369, 1373
BstDEI	CTNAG	6 cut(s)	356, 426, 522, 1140, 1265, 1506
BstDSI	CCRYGG	6 cut(s)	369, 476, 592, 996, 1088, 1154
BstF5I	GGATG	6 cut(s)	126, 316, 984, 1026, 1120, 1449
BstFNI	CGCG	5 cut(s)	56, 351, 371, 478, 594
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	4 cut(s)	58, 110, 362, 871
BstKTI	GATC	6 cut(s)	280, 432, 1085, 1393, 1537, 1747
BstMAI	GTCTC	4 cut(s)	82, 995, 1228, 1504
BstMBI	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
BstMCI	CGRYCG	1 cut(s)	837
BstNI	CCWGG	4 cut(s)	518, 1018, 1257, 1384
BstNSI	RCATGY	2 cut(s)	880, 1375
BstSCI	CCNGG	5 cut(s)	516, 602, 1016, 1255, 1382
BstSFI	CTRYAG	1 cut(s)	1130
BstSLI	GKGCMC	2 cut(s)	1040, 1451
BstUI	CGCG	5 cut(s)	56, 351, 371, 478, 594
BstV1I	GCAGC	4 cut(s)	82, 841, 1248, 1319
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	4 cut(s)	429, 1082, 1390, 1744
BstYI	RGATCY	4 cut(s)	429, 1082, 1390, 1744
BstZI	CGGCCG	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	1414
BsuRI	GGCC	5 cut(s)	168, 836, 917, 995, 1072
BtgI	CCRYGG	6 cut(s)	369, 476, 592, 996, 1088, 1154
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	6 cut(s)	126, 316, 984, 1026, 1120, 1449
BtsIMutI	CAGTG	2 cut(s)	1247, 1686
BveI	ACCTGC	2 cut(s)	564, 750
Cac8I	GCNNGC	7 cut(s)	102, 106, 112, 259, 664, 1369, 1373
CciI	TCATGA	1 cut(s)	1287
CfoI	GCGC	4 cut(s)	58, 110, 362, 871
Cfr10I	RCCGGY	5 cut(s)	110, 257, 529, 623, 662
Cfr13I	GGNCC	5 cut(s)	295, 532, 726, 915, 1070
Cfr42I	CCGCGG	3 cut(s)	372, 479, 595
CpoI	CGGWCCG	1 cut(s)	726
CseI	GACGC	2 cut(s)	250, 547
Csp6I	GTAC	3 cut(s)	709, 1199, 1711
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CspI	CGGWCCG	1 cut(s)	726
CviAII	CATG	9 cut(s)	877, 997, 1089, 1110, 1155, 1288, 1372, 1477, 1579
CviQI	GTAC	3 cut(s)	709, 1199, 1711
DdeI	CTNAG	6 cut(s)	356, 426, 522, 1140, 1265, 1506
DpnI	GATC	6 cut(s)	279, 431, 1084, 1392, 1536, 1746
DpnII	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
EaeI	YGGCCR	2 cut(s)	834, 993
EagI	CGGCCG	1 cut(s)	834
Eam1104I	CTCTTC	2 cut(s)	1194, 1487
EarI	CTCTTC	2 cut(s)	1194, 1487
EciI	GGCGGA	5 cut(s)	51, 569, 739, 863, 1039
Ecl136II	GAGCTC	3 cut(s)	690, 768, 1244
EclXI	CGGCCG	1 cut(s)	834
Eco130I	CCWWGG	6 cut(s)	163, 996, 1073, 1088, 1154, 1484
Eco24I	GRGCYC	3 cut(s)	692, 770, 1246
Eco31I	GGTCTC	1 cut(s)	1504
Eco47I	GGWCC	3 cut(s)	295, 532, 726
Eco52I	CGGCCG	1 cut(s)	834
Eco53kI	GAGCTC	3 cut(s)	690, 768, 1244
Eco57I	CTGAAG	3 cut(s)	803, 1085, 1143
EcoICRI	GAGCTC	3 cut(s)	690, 768, 1244
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	1283
EcoRII	CCWGG	4 cut(s)	516, 1016, 1255, 1382
EcoT14I	CCWWGG	6 cut(s)	163, 996, 1073, 1088, 1154, 1484
EcoT38I	GRGCYC	3 cut(s)	692, 770, 1246
ErhI	CCWWGG	6 cut(s)	163, 996, 1073, 1088, 1154, 1484
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	9 cut(s)	880, 1000, 1092, 1113, 1158, 1291, 1375, 1480, 1582
FalI	AAGNNNNNCTT	2 cut(s)	1615, 1647
FaqI	GGGAC	4 cut(s)	458, 587, 610, 1706
FatI	CATG	9 cut(s)	876, 996, 1088, 1109, 1154, 1287, 1371, 1476, 1578
FauI	CCCGC	3 cut(s)	483, 510, 587
FbaI	TGATCA	1 cut(s)	1534
FokI	GGATG	6 cut(s)	113, 303, 991, 1033, 1127, 1456
FriOI	GRGCYC	3 cut(s)	692, 770, 1246
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	4 cut(s)	57, 109, 361, 870
GsaI	CCCAGC	2 cut(s)	912, 978
GsuI	CTGGAG	4 cut(s)	649, 676, 825, 1000
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	168, 836, 917, 995, 1072
HgaI	GACGC	2 cut(s)	250, 547
HhaI	GCGC	4 cut(s)	58, 110, 362, 871
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	9 cut(s)	880, 1000, 1092, 1113, 1158, 1291, 1375, 1480, 1582
Hin6I	GCGC	4 cut(s)	56, 108, 360, 869
HinP1I	GCGC	4 cut(s)	56, 108, 360, 869
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HinfI	GANTC	9 cut(s)	333, 436, 491, 598, 668, 984, 1010, 1236, 1252
HphI	GGTGA	9 cut(s)	8, 115, 335, 541, 610, 821, 940, 1159, 1536
Hpy166II	GTNNAC	7 cut(s)	151, 325, 1150, 1165, 1449, 1526, 1565
Hpy188I	TCNGA	9 cut(s)	445, 790, 903, 1241, 1443, 1534, 1622, 1650, 1731
Hpy188III	TCNNGA	8 cut(s)	330, 433, 535, 693, 804, 988, 1061, 1288
Hpy8I	GTNNAC	7 cut(s)	151, 325, 1150, 1165, 1449, 1526, 1565
Hpy99I	CGWCG	5 cut(s)	293, 398, 401, 662, 716
HpyCH4III	ACNGT	6 cut(s)	20, 730, 1198, 1216, 1530, 1697
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	7 cut(s)	559, 1132, 1175, 1375, 1449, 1605, 1686
HpyF3I	CTNAG	6 cut(s)	356, 426, 522, 1140, 1265, 1506
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	9 cut(s)	880, 1000, 1092, 1113, 1158, 1291, 1375, 1480, 1582
HspAI	GCGC	4 cut(s)	56, 108, 360, 869
Kpn2I	TCCGGA	2 cut(s)	329, 1060
KroI	GCCGGC	3 cut(s)	110, 257, 662
KroNI	GCCGGC	3 cut(s)	112, 259, 664
Ksp22I	TGATCA	1 cut(s)	1534
KspI	CCGCGG	3 cut(s)	372, 479, 595
Kzo9I	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
LmnI	GCTCC	9 cut(s)	205, 312, 630, 687, 695, 765, 1249, 1304, 1379
Lsp1109I	GCAGC	4 cut(s)	82, 841, 1248, 1319
LweI	GCATC	6 cut(s)	261, 436, 642, 1184, 1663, 1768
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	5 cut(s)	20, 121, 547, 809, 1105
MalI	GATC	6 cut(s)	279, 431, 1084, 1392, 1536, 1746
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
MboII	GAAGA	6 cut(s)	200, 1038, 1181, 1292, 1504, 1635
MflI	RGATCY	4 cut(s)	429, 1082, 1390, 1744
MhlI	GDGCHC	5 cut(s)	692, 770, 1040, 1246, 1451
MlsI	TGGCCA	1 cut(s)	995
MluCI	AATT	7 cut(s)	10, 1283, 1312, 1328, 1432, 1456, 1538
MluNI	TGGCCA	1 cut(s)	995
MlyI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 993, 1004, 1230
MmeI	TCCRAC	2 cut(s)	768, 1600
Mox20I	TGGCCA	1 cut(s)	995
MreI	CGCCGGCG	2 cut(s)	257, 662
MroI	TCCGGA	2 cut(s)	329, 1060
MroNI	GCCGGC	3 cut(s)	110, 257, 662
MroXI	GAANNNNTTC	1 cut(s)	1627
MscI	TGGCCA	1 cut(s)	995
MseI	TTAA	3 cut(s)	510, 819, 1424
Msp20I	TGGCCA	1 cut(s)	995
MspA1I	CMGCKG	3 cut(s)	371, 478, 594
MspR9I	CCNGG	5 cut(s)	518, 604, 1018, 1257, 1384
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	4 cut(s)	518, 1018, 1257, 1384
MvnI	CGCG	5 cut(s)	56, 351, 371, 478, 594
NaeI	GCCGGC	3 cut(s)	112, 259, 664
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	3 cut(s)	996, 1088, 1154
NdeII	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
NgoMIV	GCCGGC	3 cut(s)	110, 257, 662
NlaIII	CATG	9 cut(s)	880, 1000, 1092, 1113, 1158, 1291, 1375, 1480, 1582
NlaIV	GGNNCC	4 cut(s)	1084, 1381, 1482, 1595
NmeAIII	GCCGAG	1 cut(s)	862
NmuCI	GTSAC	4 cut(s)	20, 121, 547, 809
NspI	RCATGY	2 cut(s)	880, 1375
PaeI	GCATGC	1 cut(s)	1375
PagI	TCATGA	1 cut(s)	1287
PaqCI	CACCTGC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 402, 663
PctI	GAATGC	1 cut(s)	1141
PdiI	GCCGGC	3 cut(s)	112, 259, 664
PdmI	GAANNNNTTC	1 cut(s)	1627
PfeI	GAWTC	1 cut(s)	1252
PflFI	GACNNNGTC	1 cut(s)	293
PflMI	CCANNNNNTGG	2 cut(s)	96, 627
PfoI	TCCNGGA	1 cut(s)	1016
PleI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 992, 1004, 1230
PpsI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 992, 1004, 1230
PpuMI	RGGWCCY	1 cut(s)	295
Psp124BI	GAGCTC	3 cut(s)	692, 770, 1246
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	4 cut(s)	516, 1016, 1255, 1382
PspFI	CCCAGC	2 cut(s)	908, 974
PspGI	CCWGG	4 cut(s)	516, 1016, 1255, 1382
PspN4I	GGNNCC	4 cut(s)	1084, 1381, 1482, 1595
PspPI	GGNCC	5 cut(s)	295, 532, 726, 915, 1070
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	1134
PsuI	RGATCY	4 cut(s)	429, 1082, 1390, 1744
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	710, 1200, 1712
RsaNI	GTAC	3 cut(s)	709, 1199, 1711
Rsr2I	CGGWCCG	1 cut(s)	726
RsrII	CGGWCCG	1 cut(s)	726
SacI	GAGCTC	3 cut(s)	692, 770, 1246
SacII	CCGCGG	3 cut(s)	372, 479, 595
SaqAI	TTAA	3 cut(s)	510, 819, 1424
Sau3AI	GATC	6 cut(s)	277, 429, 1082, 1390, 1534, 1744
Sau96I	GGNCC	5 cut(s)	295, 532, 726, 915, 1070
SchI	GAGTC	8 cut(s)	327, 430, 485, 592, 662, 993, 1004, 1230
ScrFI	CCNGG	5 cut(s)	518, 604, 1018, 1257, 1384
SduI	GDGCHC	5 cut(s)	692, 770, 1040, 1246, 1451
SfaNI	GCATC	6 cut(s)	261, 436, 642, 1184, 1663, 1768
SfcI	CTRYAG	1 cut(s)	1130
Sfr303I	CCGCGG	3 cut(s)	372, 479, 595
SgrAI	CRCCGGYG	2 cut(s)	257, 662
SgrBI	CCGCGG	3 cut(s)	372, 479, 595
SinI	GGWCC	3 cut(s)	295, 532, 726
SmlI	CTYRAG	1 cut(s)	1784
SmoI	CTYRAG	1 cut(s)	1784
SphI	GCATGC	1 cut(s)	1375
Sse9I	AATT	7 cut(s)	10, 1283, 1312, 1328, 1432, 1456, 1538
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	3 cut(s)	692, 770, 1246
StyD4I	CCNGG	5 cut(s)	516, 602, 1016, 1255, 1382
StyI	CCWWGG	6 cut(s)	163, 996, 1073, 1088, 1154, 1484
TaaI	ACNGT	6 cut(s)	20, 730, 1198, 1216, 1530, 1697
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	3 cut(s)	84, 174, 494
TasI	AATT	7 cut(s)	10, 1283, 1312, 1328, 1432, 1456, 1538
TfiI	GAWTC	1 cut(s)	1252
Tru1I	TTAA	3 cut(s)	510, 819, 1424
Tru9I	TTAA	3 cut(s)	510, 819, 1424
TscAI	CASTG	2 cut(s)	1254, 1693
TseFI	GTSAC	4 cut(s)	20, 121, 547, 809
TseI	GCWGC	4 cut(s)	70, 854, 1261, 1307
Tsp45I	GTSAC	4 cut(s)	20, 121, 547, 809
TspDTI	ATGAA	6 cut(s)	1131, 1181, 1199, 1276, 1443, 1731
TspGWI	ACGGA	2 cut(s)	109, 535
TspRI	CASTG	2 cut(s)	1254, 1693
Tth111I	GACNNNGTC	1 cut(s)	293
Van91I	CCANNNNNTGG	2 cut(s)	96, 627
VneI	GTGCAC	1 cut(s)	1447
VpaK11BI	GGWCC	3 cut(s)	295, 532, 726
XapI	RAATTY	2 cut(s)	1283, 1432
XceI	RCATGY	2 cut(s)	880, 1375
XmnI	GAANNNNTTC	1 cut(s)	1627
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.